Wall clock time and date at job start Tue Mar 31 2020 20:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 H 1.09000 * 109.47334 * 54.99979 * 3 2 1 5 5 C 1.53007 * 109.47071 * 294.99898 * 3 2 1 6 6 C 1.53004 * 109.47094 * 175.00050 * 3 2 1 7 7 C 1.53005 * 109.47227 * 184.99841 * 6 3 2 8 8 C 1.50696 * 109.47208 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99877 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99946 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00077 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.85392 * 328.79501 * 11 10 8 13 13 C 1.54626 * 111.00103 * 92.60480 * 11 10 8 14 14 C 1.51291 * 104.25547 * 142.71383 * 13 11 10 15 15 O 1.21280 * 124.94051 * 164.01255 * 14 13 11 16 16 N 1.34415 * 110.11361 * 344.14971 * 14 13 11 17 17 C 1.46502 * 124.34954 * 179.43943 * 16 14 13 18 18 C 1.53495 * 114.20341 * 299.69621 * 17 16 14 19 19 N 1.47066 * 87.98658 * 87.71675 * 18 17 16 20 20 C 1.36937 * 136.06113 * 206.85859 * 19 18 17 21 21 H 1.07995 * 120.00001 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00320 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99557 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 60.00463 * 24 22 20 26 26 H 1.48506 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47174 * 300.00290 * 24 22 20 28 28 C 1.47067 * 87.88528 * 27.11900 * 19 18 17 29 29 C 1.46761 * 111.30076 * 359.16442 * 16 14 13 30 30 H 1.09002 * 109.46985 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46970 * 299.99996 * 1 2 3 32 32 H 1.09008 * 109.47154 * 60.00275 * 1 2 3 33 33 H 1.08996 * 109.46970 * 240.00004 * 2 1 3 34 34 H 1.08994 * 109.47160 * 119.99476 * 2 1 3 35 35 H 1.09005 * 109.47117 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47040 * 299.99689 * 5 3 2 37 37 H 1.08999 * 109.47137 * 60.00241 * 5 3 2 38 38 H 1.08996 * 109.46854 * 64.99935 * 6 3 2 39 39 H 1.08998 * 109.47246 * 304.99670 * 6 3 2 40 40 H 1.09000 * 109.46868 * 59.99554 * 7 6 3 41 41 H 1.08998 * 109.46868 * 300.00061 * 7 6 3 42 42 H 0.97004 * 119.99987 * 0.02562 * 10 8 7 43 43 H 1.08997 * 110.49066 * 261.61532 * 13 11 10 44 44 H 1.09002 * 110.48366 * 24.25720 * 13 11 10 45 45 H 1.08999 * 113.28231 * 166.63148 * 17 16 14 46 46 H 1.09005 * 113.46950 * 332.94241 * 18 17 16 47 47 H 1.08998 * 113.47096 * 202.49885 * 18 17 16 48 48 H 0.96999 * 119.99537 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.46858 * 87.65629 * 28 19 18 50 50 H 1.08993 * 113.47208 * 218.09965 * 28 19 18 51 51 H 1.09000 * 110.24341 * 136.28420 * 29 16 14 52 52 H 1.08999 * 110.25608 * 258.28598 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8851 0.2511 8 6 5.5663 2.8869 0.3755 9 8 6.1770 1.8390 0.3645 10 7 6.2309 4.0529 0.4980 11 6 7.6910 4.0548 0.6184 12 1 8.0396 3.1550 1.1253 13 6 8.3611 4.2043 -0.7670 14 6 9.5653 5.0821 -0.5057 15 8 10.5038 5.2170 -1.2619 16 7 9.4449 5.6885 0.6879 17 6 10.4412 6.5998 1.2563 18 6 11.8226 5.9664 1.4724 19 7 12.1549 6.3450 0.0907 20 6 12.9968 5.8797 -0.8839 21 1 13.6207 5.0192 -0.6928 22 6 13.0476 6.5134 -2.1179 23 7 12.2869 7.5619 -2.3510 24 14 14.1956 5.8782 -3.4476 25 1 13.8404 4.4750 -3.7793 26 1 14.0626 6.7232 -4.6615 27 1 15.5969 5.9317 -2.9587 28 6 11.1899 7.4474 0.2184 29 6 8.1842 5.3253 1.3457 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.9989 3.1541 -1.3076 36 1 2.0699 1.5875 -2.1492 37 1 0.5489 2.1252 -1.3970 38 1 4.0029 0.9836 -0.7596 39 1 3.8571 0.8801 1.0113 40 1 3.6263 3.3458 1.1364 41 1 3.7722 3.4493 -0.6345 42 1 5.7425 4.8910 0.5064 43 1 8.6704 3.2311 -1.1483 44 1 7.6834 4.6917 -1.4679 45 1 10.0700 7.1650 2.1112 46 1 11.7861 4.8885 1.6301 47 1 12.4245 6.4823 2.2205 48 1 12.3227 8.0050 -3.2132 49 1 11.6232 8.3579 0.6327 50 1 10.6153 7.6288 -0.6898 51 1 8.3568 5.1130 2.4008 52 1 7.4562 6.1292 1.2361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108581079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:55 Heat of formation + Delta-G solvation = -29.292906 kcal Electronic energy + Delta-G solvation = -29783.269046 eV Core-core repulsion = 25784.066692 eV Total energy + Delta-G solvation = -3999.202354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73207 -40.63706 -38.85797 -37.99666 -37.22973 -35.05357 -33.96814 -33.18019 -31.37844 -29.63246 -29.15792 -28.16796 -26.59674 -26.26819 -25.20761 -23.79177 -22.33889 -22.11038 -21.33330 -20.68565 -19.29021 -18.65777 -18.17152 -17.55382 -17.15024 -16.83918 -16.70335 -16.39523 -15.93447 -15.71484 -15.50881 -15.25160 -15.06863 -14.61611 -14.52623 -14.45035 -14.22988 -14.10779 -13.91962 -13.69942 -13.37127 -13.21747 -12.88252 -12.77243 -12.75305 -12.73045 -12.57336 -12.53642 -12.44276 -12.17942 -11.85973 -11.79575 -11.72508 -11.42773 -11.35415 -11.25428 -11.19515 -10.87837 -10.77934 -10.41390 -9.90413 -9.30960 -8.61546 -7.71357 -4.95817 1.38513 1.44072 1.47548 1.68417 1.99950 2.03346 2.37806 2.56271 3.45680 3.52468 3.55241 3.66848 3.79457 3.85137 3.86496 4.01680 4.04473 4.08773 4.21390 4.38502 4.48900 4.50119 4.61695 4.63147 4.64135 4.70390 4.71290 4.76282 4.80960 4.84368 4.87765 4.93877 4.95381 4.97940 5.14186 5.16760 5.23019 5.25176 5.27403 5.29641 5.35758 5.38240 5.49043 5.62050 5.62536 5.62996 6.06758 6.17483 6.52627 6.60958 7.07579 7.33021 7.71880 7.82865 8.79908 9.47806 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002109 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.188729 B =13271.965079 C =13972.343886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.086 4.086 4 H 0.085 0.915 5 C -0.153 4.153 6 C -0.099 4.099 7 C -0.132 4.132 8 C 0.510 3.490 9 O -0.587 6.587 10 N -0.704 5.704 11 C 0.150 3.850 12 H 0.095 0.905 13 C -0.157 4.157 14 C 0.473 3.527 15 O -0.492 6.492 16 N -0.605 5.605 17 C 0.129 3.871 18 C 0.098 3.902 19 N -0.618 5.618 20 C -0.181 4.181 21 H 0.058 0.942 22 C -0.054 4.054 23 N -0.944 5.944 24 Si 0.956 3.044 25 H -0.294 1.294 26 H -0.295 1.295 27 H -0.278 1.278 28 C 0.144 3.856 29 C 0.112 3.888 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.422 0.578 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.146 0.854 46 H 0.030 0.970 47 H 0.063 0.937 48 H 0.235 0.765 49 H 0.029 0.971 50 H 0.033 0.967 51 H 0.109 0.891 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.615 -6.957 12.288 31.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.104 4.104 4 H 0.103 0.897 5 C -0.210 4.210 6 C -0.137 4.137 7 C -0.172 4.172 8 C 0.299 3.701 9 O -0.467 6.467 10 N -0.358 5.358 11 C 0.043 3.957 12 H 0.113 0.887 13 C -0.199 4.199 14 C 0.258 3.742 15 O -0.362 6.362 16 N -0.341 5.341 17 C 0.025 3.975 18 C -0.028 4.028 19 N -0.343 5.343 20 C -0.310 4.310 21 H 0.076 0.924 22 C -0.246 4.246 23 N -0.594 5.594 24 Si 0.787 3.213 25 H -0.221 1.221 26 H -0.222 1.222 27 H -0.204 1.204 28 C 0.018 3.982 29 C -0.011 4.011 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.260 0.740 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.163 0.837 46 H 0.048 0.952 47 H 0.080 0.920 48 H 0.044 0.956 49 H 0.046 0.954 50 H 0.052 0.948 51 H 0.127 0.873 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -27.458 -7.611 11.566 30.752 hybrid contribution 1.151 -0.113 -1.386 1.805 sum -26.308 -7.724 10.181 29.247 Atomic orbital electron populations 1.21811 0.95135 1.01695 1.02258 1.21590 0.96483 0.96572 1.01519 1.21152 0.93762 0.96277 0.99237 0.89702 1.21974 1.01714 1.00836 0.96485 1.21359 0.95377 0.95202 1.01752 1.21793 0.88584 1.00034 1.06749 1.21496 0.91711 0.82796 0.74104 1.90725 1.71256 1.33350 1.51377 1.45808 1.05602 1.09978 1.74393 1.21459 0.81177 0.99479 0.93588 0.88658 1.22711 0.96670 1.00155 1.00375 1.21458 0.88159 0.81888 0.82722 1.91184 1.34387 1.61498 1.49166 1.47865 1.20328 1.46643 1.19303 1.22428 0.87446 0.91021 0.96623 1.23115 0.94171 0.97921 0.87623 1.45421 1.47586 1.32289 1.09018 1.18649 1.12604 1.07928 0.91829 0.92373 1.25147 1.01712 0.98941 0.98849 1.69962 1.43851 1.23655 1.21976 0.85487 0.79226 0.76869 0.79732 1.22091 1.22160 1.20449 1.22324 0.89401 0.90752 0.95749 1.22347 0.84955 0.95693 0.98076 0.92962 0.92196 0.92209 0.92959 0.92410 0.91417 0.93740 0.91859 0.93501 0.92634 0.85645 0.86627 0.73963 0.90486 0.87588 0.83659 0.95151 0.91956 0.95589 0.95353 0.94819 0.87325 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 71.98 0.70 -0.64 16 2 C -0.12 -1.37 5.40 30.59 0.17 -1.21 16 3 C -0.09 -0.82 2.39 -10.79 -0.03 -0.85 16 4 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 5 C -0.15 -1.33 8.70 71.98 0.63 -0.71 16 6 C -0.10 -1.35 3.97 30.60 0.12 -1.23 16 7 C -0.13 -1.28 5.46 29.85 0.16 -1.12 16 8 C 0.51 9.19 7.83 87.66 0.69 9.87 16 9 O -0.59 -16.93 15.62 -3.05 -0.05 -16.98 16 10 N -0.70 -9.89 5.15 -437.53 -2.25 -12.14 16 11 C 0.15 3.13 3.53 46.05 0.16 3.29 16 12 H 0.10 2.34 7.54 -2.39 -0.02 2.32 16 13 C -0.16 -4.76 6.59 30.59 0.20 -4.56 16 14 C 0.47 19.40 7.56 87.90 0.66 20.07 16 15 O -0.49 -27.59 12.47 -3.03 -0.04 -27.63 16 16 N -0.60 -19.23 3.18 -793.34 -2.52 -21.75 16 17 C 0.13 4.40 5.12 45.46 0.23 4.63 16 18 C 0.10 4.00 8.34 83.18 0.69 4.69 16 19 N -0.62 -33.47 2.29 -738.53 -1.69 -35.17 16 20 C -0.18 -11.22 8.93 84.03 0.75 -10.47 16 21 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 22 C -0.05 -3.41 5.06 84.86 0.43 -2.98 16 23 N -0.94 -61.78 11.51 21.65 0.25 -61.53 16 24 Si 0.96 51.52 29.55 68.60 2.03 53.55 16 25 H -0.29 -15.88 7.11 99.48 0.71 -15.17 16 26 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 27 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 28 C 0.14 6.95 6.41 83.18 0.53 7.48 16 29 C 0.11 2.01 7.08 86.83 0.61 2.62 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.49 6.57 -2.38 -0.02 0.47 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.44 6.56 -2.38 -0.02 0.42 16 36 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.06 0.48 6.56 -2.39 -0.02 0.46 16 38 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 39 H 0.05 0.91 8.10 -2.39 -0.02 0.90 16 40 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.12 0.73 6.56 -2.39 -0.02 0.71 16 42 H 0.42 2.70 8.43 -92.71 -0.78 1.92 16 43 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.11 2.94 8.08 -2.39 -0.02 2.92 16 45 H 0.15 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.24 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.03 1.91 6.58 -2.39 -0.02 1.89 16 51 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.10 1.21 7.80 -2.39 -0.02 1.19 16 Total: -1.00 -91.21 406.00 2.56 -88.65 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.12 Total: 4.09 kcal Atomic # 6 Polarization: 22.18 SS G_CDS: 6.72 Total: 28.90 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -6.22 Total: -130.59 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.09 Total: -44.61 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.03 Total: 53.55 kcal Total: -91.21 2.56 -88.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108581079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.360 kcal (2) G-P(sol) polarization free energy of solvation -91.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds