Wall clock time and date at job start Tue Mar 31 2020 20:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47605 * 2 1 4 4 H 1.09000 * 109.47025 * 55.00021 * 3 2 1 5 5 C 1.53002 * 109.46625 * 295.00158 * 3 2 1 6 6 C 1.53001 * 109.47200 * 175.00287 * 3 2 1 7 7 C 1.50696 * 109.46991 * 185.00164 * 6 3 2 8 8 O 1.21283 * 120.00228 * 359.71660 * 7 6 3 9 9 N 1.34780 * 120.00095 * 179.97438 * 7 6 3 10 10 C 1.46496 * 119.99998 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.54939 * 33.04691 * 10 9 7 12 12 C 1.54840 * 110.60986 * 155.90923 * 10 9 7 13 13 C 1.55843 * 103.51901 * 118.51106 * 12 10 9 14 14 H 1.09000 * 115.57925 * 159.64303 * 13 12 10 15 15 C 1.55848 * 105.03349 * 288.27349 * 13 12 10 16 16 C 1.54831 * 103.52177 * 71.72698 * 15 13 12 17 17 C 1.55848 * 110.61573 * 270.17856 * 10 9 7 18 18 H 1.08997 * 115.58197 * 81.85107 * 17 10 9 19 19 N 1.50649 * 101.02897 * 32.99307 * 13 12 10 20 20 C 1.46904 * 111.00314 * 62.34871 * 19 13 12 21 21 C 1.50690 * 109.47149 * 69.87250 * 20 19 13 22 22 O 1.21298 * 120.00280 * 0.02562 * 21 20 19 23 23 N 1.34782 * 120.00301 * 180.02562 * 21 20 19 24 24 C 1.37101 * 119.99983 * 180.02562 * 23 21 20 25 25 H 1.07990 * 120.00053 * 359.97438 * 24 23 21 26 26 C 1.38949 * 119.99619 * 180.02562 * 24 23 21 27 27 N 1.31419 * 120.00024 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99915 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47118 * 59.99822 * 28 26 24 30 30 H 1.48502 * 109.46865 * 179.97438 * 28 26 24 31 31 H 1.48496 * 109.47053 * 299.99992 * 28 26 24 32 32 H 1.08999 * 109.47186 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46800 * 300.00237 * 1 2 3 34 34 H 1.09001 * 109.47092 * 59.99836 * 1 2 3 35 35 H 1.09006 * 109.47294 * 239.99732 * 2 1 3 36 36 H 1.09001 * 109.47092 * 120.00164 * 2 1 3 37 37 H 1.08995 * 109.47623 * 60.00231 * 5 3 2 38 38 H 1.09000 * 109.46712 * 180.02562 * 5 3 2 39 39 H 1.09002 * 109.46880 * 299.99390 * 5 3 2 40 40 H 1.08999 * 109.47316 * 64.99881 * 6 3 2 41 41 H 1.09000 * 109.46908 * 304.99747 * 6 3 2 42 42 H 0.97001 * 119.99746 * 0.02562 * 9 7 6 43 43 H 1.09004 * 110.60958 * 237.01896 * 12 10 9 44 44 H 1.08995 * 110.61432 * 359.97438 * 12 10 9 45 45 H 1.09001 * 110.61483 * 190.24068 * 15 13 12 46 46 H 1.09003 * 110.61055 * 313.21989 * 15 13 12 47 47 H 1.08998 * 110.61370 * 118.50906 * 16 15 13 48 48 H 1.09002 * 110.61204 * 241.33755 * 16 15 13 49 49 H 1.08995 * 109.47532 * 189.87830 * 20 19 13 50 50 H 1.09002 * 109.46398 * 309.87540 * 20 19 13 51 51 H 0.96999 * 119.99364 * 0.02562 * 23 21 20 52 52 H 0.96999 * 119.99504 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 3.5650 1.4442 0.1257 7 6 4.0572 2.8631 0.2492 8 8 3.2667 3.7828 0.2327 9 7 5.3763 3.1105 0.3728 10 6 5.8548 4.4899 0.4924 11 1 5.1284 5.1019 1.0270 12 6 7.2298 4.5302 1.2032 13 6 8.1761 5.1500 0.1312 14 1 9.0986 5.5866 0.5138 15 6 8.3541 4.0356 -0.9436 16 6 6.9792 3.9953 -1.6544 17 6 6.1500 5.0922 -0.9144 18 1 5.2839 5.4768 -1.4529 19 7 7.2334 6.0867 -0.5783 20 6 6.7301 7.1200 0.3366 21 6 7.8481 8.0671 0.6885 22 8 8.9553 7.8984 0.2226 23 7 7.6179 9.1019 1.5209 24 6 8.6350 9.9638 1.8406 25 1 9.6207 9.8135 1.4258 26 6 8.3978 11.0302 2.6992 27 7 7.1984 11.2128 3.2044 28 14 9.7837 12.2043 3.1354 29 1 10.2959 12.8467 1.8985 30 1 9.2750 13.2485 4.0607 31 1 10.8816 11.4514 3.7933 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 0.5491 2.1253 -1.3970 38 1 1.9991 3.1539 -1.3076 39 1 2.0700 1.5874 -2.1492 40 1 4.0030 0.9834 -0.7597 41 1 3.8571 0.8799 1.0112 42 1 6.0089 2.3752 0.3819 43 1 7.1855 5.1643 2.0887 44 1 7.5550 3.5239 1.4670 45 1 9.1422 4.3035 -1.6473 46 1 8.5699 3.0774 -0.4709 47 1 7.0857 4.2433 -2.7105 48 1 6.5147 3.0163 -1.5363 49 1 5.9246 7.6724 -0.1470 50 1 6.3536 6.6490 1.2446 51 1 6.7327 9.2366 1.8938 52 1 7.0328 11.9575 3.8035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109206209.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:19 Heat of formation + Delta-G solvation = -59.517084 kcal Electronic energy + Delta-G solvation = -30258.864545 eV Core-core repulsion = 26258.351572 eV Total energy + Delta-G solvation = -4000.512972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27509 -39.59309 -37.81516 -36.59944 -34.37366 -33.83777 -31.94256 -31.17130 -31.09640 -29.77609 -28.91404 -27.43997 -26.38295 -24.38042 -24.10358 -22.16972 -21.11154 -20.32130 -20.02014 -19.43388 -18.89064 -17.79432 -17.26819 -16.58838 -16.06270 -15.74640 -15.64451 -15.37782 -15.03434 -14.57546 -14.43465 -14.30974 -13.92244 -13.75296 -13.39514 -12.99491 -12.81869 -12.74909 -12.65877 -12.24938 -12.20297 -11.97553 -11.93659 -11.77000 -11.68681 -11.62777 -11.43716 -11.29707 -11.12831 -11.01629 -10.91485 -10.84883 -10.76062 -10.68007 -10.42526 -10.18763 -10.12540 -9.78961 -9.46046 -9.29423 -8.43122 -8.02542 -7.92251 -6.38580 -3.79488 2.51678 3.00529 3.21621 3.27177 3.31428 3.92167 3.98447 4.22897 4.41613 4.44712 4.55518 4.57694 4.65253 4.80609 4.88377 4.95263 5.06984 5.14571 5.17574 5.19422 5.25091 5.27278 5.33383 5.37214 5.39851 5.42540 5.44323 5.48175 5.67054 5.67437 5.69070 5.76922 5.77644 5.84609 5.90953 5.95798 5.99081 6.00083 6.13043 6.18933 6.22795 6.28363 6.30711 6.42756 6.46347 6.90102 7.22441 7.35973 7.57527 8.08883 8.12228 8.64955 9.20877 9.57926 10.09812 10.79108 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.002298 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.828261 B =12182.452955 C =13113.975683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.533 6.533 9 N -0.717 5.717 10 C 0.111 3.889 11 H 0.094 0.906 12 C -0.164 4.164 13 C 0.060 3.940 14 H 0.129 0.871 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.035 3.965 18 H 0.114 0.886 19 N -0.461 5.461 20 C 0.020 3.980 21 C 0.446 3.554 22 O -0.580 6.580 23 N -0.565 5.565 24 C -0.298 4.298 25 H 0.102 0.898 26 C 0.021 3.979 27 N -0.902 5.902 28 Si 0.930 3.070 29 H -0.274 1.274 30 H -0.285 1.285 31 H -0.274 1.274 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.398 0.602 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.056 0.944 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 -24.077 -5.515 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.178 4.178 7 C 0.297 3.703 8 O -0.410 6.410 9 N -0.369 5.369 10 C 0.005 3.995 11 H 0.112 0.888 12 C -0.203 4.203 13 C -0.049 4.049 14 H 0.147 0.853 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.075 4.075 18 H 0.132 0.868 19 N -0.183 5.183 20 C -0.111 4.111 21 C 0.232 3.768 22 O -0.464 6.464 23 N -0.201 5.201 24 C -0.428 4.428 25 H 0.120 0.880 26 C -0.180 4.180 27 N -0.543 5.543 28 Si 0.758 3.242 29 H -0.199 1.199 30 H -0.210 1.210 31 H -0.200 1.200 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.233 0.767 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.074 0.926 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.831 -23.004 -6.202 25.409 hybrid contribution -0.030 0.038 1.363 1.364 sum -8.861 -22.966 -4.838 25.087 Atomic orbital electron populations 1.21808 0.95714 1.01405 1.02184 1.21595 0.96235 0.96128 1.01795 1.20917 0.92636 0.95935 1.00016 0.90396 1.21996 1.01191 1.02256 0.95712 1.21777 0.97965 0.94006 1.04024 1.20737 0.82107 0.91683 0.75797 1.90690 1.54592 1.46597 1.49115 1.46124 1.07479 1.08621 1.74705 1.22790 0.95998 0.82900 0.97804 0.88755 1.23579 0.94630 1.02142 0.99984 1.24487 0.97257 0.91378 0.91739 0.85342 1.22614 0.97518 0.97237 0.97990 1.22572 0.95217 0.97458 0.99731 1.24922 0.94988 0.92412 0.95166 0.86842 1.67553 1.08603 1.07296 1.34852 1.22165 0.97969 0.94741 0.96274 1.19681 0.89436 0.84077 0.83623 1.90500 1.24658 1.75016 1.56239 1.41865 1.12899 1.24150 1.41227 1.19634 0.92613 1.05156 1.25397 0.88003 1.25263 0.97528 0.98341 0.96879 1.69613 1.20633 1.31567 1.32509 0.85924 0.80452 0.79459 0.78406 1.19915 1.21012 1.19966 0.92935 0.92696 0.92349 0.92012 0.92113 0.92749 0.90586 0.93486 0.88998 0.89123 0.76718 0.90219 0.90574 0.90898 0.91898 0.91302 0.91616 0.89308 0.92577 0.77507 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.67 37.16 0.36 -0.59 16 2 C -0.12 -0.73 5.40 -26.73 -0.14 -0.88 16 3 C -0.08 -0.60 2.04 -90.62 -0.18 -0.79 16 4 H 0.08 0.75 7.96 -51.93 -0.41 0.34 16 5 C -0.15 -1.37 8.69 37.16 0.32 -1.05 16 6 C -0.14 -0.96 5.17 -27.88 -0.14 -1.10 16 7 C 0.51 5.31 7.55 -10.99 -0.08 5.23 16 8 O -0.53 -7.70 13.62 5.55 0.08 -7.63 16 9 N -0.72 -6.67 3.71 -51.40 -0.19 -6.87 16 10 C 0.11 1.36 2.31 -65.44 -0.15 1.21 16 11 H 0.09 1.37 6.81 -51.93 -0.35 1.01 16 12 C -0.16 -2.03 5.39 -24.24 -0.13 -2.16 16 13 C 0.06 0.89 4.25 -62.56 -0.27 0.63 16 14 H 0.13 2.31 6.99 -51.93 -0.36 1.95 16 15 C -0.12 -1.35 6.43 -24.25 -0.16 -1.51 16 16 C -0.11 -1.24 6.31 -24.08 -0.15 -1.39 16 17 C 0.04 0.47 4.87 -62.27 -0.30 0.17 16 18 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 19 N -0.46 -7.73 5.30 -206.65 -1.09 -8.82 16 20 C 0.02 0.38 5.10 -4.98 -0.03 0.35 16 21 C 0.45 10.63 7.58 -10.99 -0.08 10.54 16 22 O -0.58 -15.59 14.46 5.54 0.08 -15.51 16 23 N -0.56 -14.50 5.29 -10.97 -0.06 -14.55 16 24 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 25 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 26 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 27 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 28 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 29 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 30 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 31 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.45 6.56 -51.93 -0.34 0.11 16 38 H 0.08 0.87 5.94 -51.93 -0.31 0.57 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.40 2.65 7.91 -40.82 -0.32 2.32 16 43 H 0.08 1.11 7.19 -51.93 -0.37 0.74 16 44 H 0.08 0.75 7.39 -51.93 -0.38 0.37 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.59 6.40 -51.93 -0.33 0.26 16 49 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 50 H 0.06 0.96 4.87 -51.93 -0.25 0.70 16 51 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 52 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -32.48 397.58 -9.55 -42.03 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -8.67 Total: 12.63 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.38 Total: 0.62 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.62 Total: -54.39 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.16 Total: -23.13 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.48 -9.55 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109206209.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.485 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds