Wall clock time and date at job start Tue Mar 31 2020 20:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 H 1.09001 * 109.47505 * 305.00339 * 3 2 1 5 5 C 1.53005 * 109.47236 * 65.00288 * 3 2 1 6 6 C 1.52992 * 109.47512 * 184.99993 * 3 2 1 7 7 C 1.50706 * 109.47680 * 174.99954 * 6 3 2 8 8 O 1.21284 * 119.99551 * 0.02562 * 7 6 3 9 9 N 1.34772 * 120.00091 * 180.02562 * 7 6 3 10 10 C 1.46506 * 119.99599 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.54715 * 33.05986 * 10 9 7 12 12 C 1.54832 * 110.61203 * 155.92714 * 10 9 7 13 13 C 1.55848 * 103.52034 * 118.50772 * 12 10 9 14 14 H 1.09002 * 115.57607 * 159.64359 * 13 12 10 15 15 C 1.55838 * 105.03303 * 288.27126 * 13 12 10 16 16 C 1.54839 * 103.52049 * 71.72833 * 15 13 12 17 17 C 1.55847 * 110.61263 * 270.19477 * 10 9 7 18 18 H 1.08998 * 115.58120 * 81.85444 * 17 10 9 19 19 N 1.50647 * 101.02610 * 32.99681 * 13 12 10 20 20 C 1.46891 * 111.00389 * 62.34537 * 19 13 12 21 21 C 1.50700 * 109.46934 * 69.87586 * 20 19 13 22 22 O 1.21292 * 120.00251 * 359.97438 * 21 20 19 23 23 N 1.34783 * 119.99706 * 180.02562 * 21 20 19 24 24 C 1.37099 * 119.99559 * 179.97438 * 23 21 20 25 25 H 1.08005 * 120.00152 * 0.02562 * 24 23 21 26 26 C 1.38958 * 119.99911 * 179.97438 * 24 23 21 27 27 N 1.31405 * 119.99712 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 119.99894 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.47294 * 0.02562 * 28 26 24 30 30 H 1.48498 * 109.47050 * 120.00572 * 28 26 24 31 31 H 1.48501 * 109.46701 * 240.00249 * 28 26 24 32 32 H 1.08997 * 109.47299 * 59.99735 * 1 2 3 33 33 H 1.09007 * 109.46924 * 299.99835 * 1 2 3 34 34 H 1.08999 * 109.46968 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.47299 * 120.00265 * 2 1 3 36 36 H 1.09001 * 109.47331 * 240.00120 * 2 1 3 37 37 H 1.08999 * 109.47387 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.46860 * 300.00384 * 5 3 2 39 39 H 1.09001 * 109.46832 * 59.99639 * 5 3 2 40 40 H 1.09000 * 109.47660 * 295.00266 * 6 3 2 41 41 H 1.09000 * 109.47138 * 55.00069 * 6 3 2 42 42 H 0.96999 * 120.00380 * 0.02562 * 9 7 6 43 43 H 1.09004 * 110.61512 * 237.01861 * 12 10 9 44 44 H 1.09001 * 110.61231 * 359.97438 * 12 10 9 45 45 H 1.09000 * 110.61479 * 190.23873 * 15 13 12 46 46 H 1.09001 * 110.61776 * 313.22190 * 15 13 12 47 47 H 1.08996 * 110.61478 * 118.50717 * 16 15 13 48 48 H 1.09006 * 110.61534 * 241.33634 * 16 15 13 49 49 H 1.09003 * 109.47379 * 189.87715 * 20 19 13 50 50 H 1.09005 * 109.47350 * 309.87759 * 20 19 13 51 51 H 0.96997 * 120.00308 * 359.97438 * 23 21 20 52 52 H 0.96997 * 120.00183 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5647 1.4444 -0.1257 7 6 4.0570 2.8634 -0.2492 8 8 3.2660 3.7827 -0.2374 9 7 5.3760 3.1107 -0.3729 10 6 5.8545 4.4903 -0.4924 11 1 5.2199 5.1663 0.0807 12 6 7.3271 4.5988 -0.0266 13 6 8.0784 5.0827 -1.3034 14 1 9.0471 5.5515 -1.1301 15 6 8.0881 3.8509 -2.2579 16 6 6.6154 3.7424 -2.7238 17 6 5.9087 4.9246 -1.9882 18 1 4.9622 5.2531 -2.4175 19 7 7.0230 5.9408 -1.9509 20 6 6.6671 7.0767 -1.0902 21 6 7.8186 8.0474 -1.0378 22 8 8.8360 7.8155 -1.6561 23 7 7.7184 9.1728 -0.3028 24 6 8.7662 10.0556 -0.2547 25 1 9.6718 9.8495 -0.8060 26 6 8.6628 11.2161 0.5025 27 7 7.5608 11.4671 1.1729 28 14 10.0902 12.4193 0.5675 29 1 11.2063 11.9089 -0.2686 30 1 9.6486 13.7395 0.0506 31 1 10.5501 12.5661 1.9718 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5139 0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 1.9983 3.1543 1.3072 38 1 0.5490 2.1252 1.3970 39 1 2.0699 1.5874 2.1492 40 1 4.0030 0.9836 0.7596 41 1 3.8570 0.8801 -1.0113 42 1 6.0086 2.3755 -0.3828 43 1 7.4230 5.3306 0.7756 44 1 7.7009 3.6262 0.2936 45 1 8.7472 4.0289 -3.1076 46 1 8.3877 2.9512 -1.7205 47 1 6.5446 3.8667 -3.8043 48 1 6.1860 2.7878 -2.4196 49 1 5.7877 7.5777 -1.4949 50 1 6.4494 6.7165 -0.0847 51 1 6.9050 9.3581 0.1920 52 1 7.4886 12.2770 1.7018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109206210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:22 Heat of formation + Delta-G solvation = -59.658572 kcal Electronic energy + Delta-G solvation = -30234.405400 eV Core-core repulsion = 26233.886293 eV Total energy + Delta-G solvation = -4000.519108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.27588 -39.59431 -37.81915 -36.60061 -34.37466 -33.84111 -31.94434 -31.17117 -31.09945 -29.78281 -28.90613 -27.44755 -26.38602 -24.37804 -24.10627 -22.16982 -21.10910 -20.34600 -19.99983 -19.44009 -18.89015 -17.79577 -17.27826 -16.57617 -15.98419 -15.87299 -15.59451 -15.45087 -14.92576 -14.64541 -14.45127 -14.29065 -13.86787 -13.75617 -13.43633 -12.99116 -12.82789 -12.77306 -12.64686 -12.24356 -12.13518 -12.06628 -11.93426 -11.77334 -11.68848 -11.61825 -11.43889 -11.29853 -11.12633 -11.04924 -10.92621 -10.84832 -10.74862 -10.68089 -10.32899 -10.20050 -10.11466 -9.83362 -9.48138 -9.27645 -8.43358 -8.02741 -7.92508 -6.39039 -3.79778 2.51717 3.00420 3.17721 3.28022 3.35129 3.91982 3.98239 4.22788 4.41763 4.44441 4.56404 4.56940 4.64608 4.80654 4.88142 4.95382 5.07323 5.14543 5.17522 5.19270 5.24224 5.27254 5.33681 5.36810 5.39752 5.42307 5.44187 5.48251 5.66948 5.67312 5.68977 5.76754 5.77598 5.84540 5.90760 5.95532 5.98825 5.99877 6.13132 6.18957 6.22516 6.28130 6.30509 6.42532 6.46254 6.89976 7.22380 7.35945 7.57643 8.09061 8.12188 8.64622 9.20828 9.57794 10.09533 10.78833 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.002317 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.038144 B =12080.979093 C =13156.524859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.534 6.534 9 N -0.717 5.717 10 C 0.111 3.889 11 H 0.094 0.906 12 C -0.164 4.164 13 C 0.060 3.940 14 H 0.129 0.871 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.035 3.965 18 H 0.114 0.886 19 N -0.461 5.461 20 C 0.020 3.980 21 C 0.447 3.553 22 O -0.580 6.580 23 N -0.565 5.565 24 C -0.297 4.297 25 H 0.103 0.897 26 C 0.021 3.979 27 N -0.902 5.902 28 Si 0.929 3.071 29 H -0.268 1.268 30 H -0.282 1.282 31 H -0.282 1.282 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.398 0.602 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.056 0.944 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 -24.483 -0.752 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.212 4.212 6 C -0.178 4.178 7 C 0.297 3.703 8 O -0.410 6.410 9 N -0.369 5.369 10 C 0.005 3.995 11 H 0.112 0.888 12 C -0.203 4.203 13 C -0.049 4.049 14 H 0.147 0.853 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.075 4.075 18 H 0.132 0.868 19 N -0.183 5.183 20 C -0.112 4.112 21 C 0.232 3.768 22 O -0.464 6.464 23 N -0.202 5.202 24 C -0.427 4.427 25 H 0.121 0.879 26 C -0.181 4.181 27 N -0.543 5.543 28 Si 0.756 3.244 29 H -0.192 1.192 30 H -0.208 1.208 31 H -0.208 1.208 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.233 0.767 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.074 0.926 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.451 -23.505 -1.608 25.385 hybrid contribution 0.172 0.208 1.336 1.363 sum -9.279 -23.298 -0.273 25.079 Atomic orbital electron populations 1.21809 0.95713 1.01406 1.02184 1.21592 0.96236 0.96121 1.01799 1.20914 0.92641 0.95936 0.99993 0.90336 1.22000 1.01222 1.02221 0.95748 1.21778 0.97960 0.94010 1.04027 1.20736 0.82157 0.91691 0.75736 1.90691 1.54489 1.46591 1.49230 1.46124 1.07553 1.08641 1.74611 1.22789 0.95291 0.83243 0.98163 0.88754 1.23580 0.94046 1.02381 1.00325 1.24486 0.97533 0.92392 0.90452 0.85339 1.22614 0.96657 0.96592 0.99493 1.22574 0.95217 0.96883 1.00311 1.24924 0.95794 0.92653 0.94135 0.86835 1.67550 1.04160 1.03793 1.42802 1.22168 0.98867 0.93462 0.96666 1.19684 0.89087 0.83829 0.84176 1.90500 1.31701 1.76711 1.47460 1.41878 1.17203 1.18319 1.42807 1.19739 0.96088 0.99393 1.27466 0.87889 1.25265 0.98022 0.98271 0.96503 1.69621 1.26346 1.27290 1.31043 0.85811 0.80848 0.79805 0.77936 1.19242 1.20774 1.20823 0.92685 0.92359 0.92935 0.92039 0.92078 0.90641 0.92719 0.93517 0.89087 0.89035 0.76716 0.90219 0.90574 0.90897 0.91894 0.91297 0.91616 0.89303 0.92570 0.77514 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.67 37.16 0.36 -0.59 16 2 C -0.12 -0.73 5.40 -26.73 -0.14 -0.88 16 3 C -0.08 -0.60 2.04 -90.62 -0.18 -0.78 16 4 H 0.08 0.75 7.96 -51.93 -0.41 0.34 16 5 C -0.15 -1.40 8.69 37.16 0.32 -1.08 16 6 C -0.14 -0.96 5.17 -27.88 -0.14 -1.10 16 7 C 0.51 5.31 7.55 -10.98 -0.08 5.23 16 8 O -0.53 -7.70 13.63 5.55 0.08 -7.63 16 9 N -0.72 -6.67 3.71 -51.40 -0.19 -6.86 16 10 C 0.11 1.36 2.32 -65.44 -0.15 1.21 16 11 H 0.09 1.37 6.81 -51.93 -0.35 1.01 16 12 C -0.16 -2.03 5.39 -24.24 -0.13 -2.16 16 13 C 0.06 0.89 4.25 -62.57 -0.27 0.63 16 14 H 0.13 2.31 6.98 -51.93 -0.36 1.94 16 15 C -0.12 -1.35 6.43 -24.25 -0.16 -1.51 16 16 C -0.11 -1.24 6.31 -24.07 -0.15 -1.39 16 17 C 0.03 0.47 4.87 -62.27 -0.30 0.16 16 18 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 19 N -0.46 -7.73 5.30 -206.66 -1.09 -8.82 16 20 C 0.02 0.37 5.10 -4.98 -0.03 0.35 16 21 C 0.45 10.63 7.58 -10.98 -0.08 10.55 16 22 O -0.58 -15.57 14.46 5.55 0.08 -15.49 16 23 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 24 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 25 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 26 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 27 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 28 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 31 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.37 6.57 -51.92 -0.34 0.03 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.89 5.95 -51.93 -0.31 0.58 16 38 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.40 2.65 7.92 -40.82 -0.32 2.32 16 43 H 0.08 1.11 7.19 -51.93 -0.37 0.74 16 44 H 0.08 0.75 7.39 -51.93 -0.38 0.37 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.59 6.40 -51.93 -0.33 0.25 16 49 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 50 H 0.06 0.96 4.87 -51.93 -0.25 0.70 16 51 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 52 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -32.54 397.58 -9.55 -42.09 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -8.67 Total: 12.58 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.38 Total: 0.62 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.62 Total: -54.38 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.16 Total: -23.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.54 -9.55 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109206210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.569 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds