Wall clock time and date at job start Tue Mar 31 2020 20:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 H 1.09001 * 109.47505 * 305.00339 * 3 2 1 5 5 C 1.53005 * 109.47236 * 65.00288 * 3 2 1 6 6 C 1.52992 * 109.47512 * 184.99993 * 3 2 1 7 7 C 1.50706 * 109.47680 * 174.99954 * 6 3 2 8 8 O 1.21284 * 119.99551 * 0.02562 * 7 6 3 9 9 N 1.34772 * 120.00091 * 180.02562 * 7 6 3 10 10 C 1.46506 * 119.99599 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.54715 * 33.05986 * 10 9 7 12 12 C 1.54832 * 110.61203 * 155.92714 * 10 9 7 13 13 C 1.55848 * 103.52034 * 118.50772 * 12 10 9 14 14 H 1.09002 * 115.57607 * 159.64359 * 13 12 10 15 15 C 1.55838 * 105.03303 * 288.27126 * 13 12 10 16 16 C 1.54839 * 103.52049 * 71.72833 * 15 13 12 17 17 C 1.55847 * 110.61263 * 270.19477 * 10 9 7 18 18 H 1.08998 * 115.58120 * 81.85444 * 17 10 9 19 19 N 1.50647 * 101.02610 * 32.99681 * 13 12 10 20 20 C 1.46891 * 111.00389 * 62.34537 * 19 13 12 21 21 C 1.50700 * 109.46934 * 69.87586 * 20 19 13 22 22 O 1.21292 * 120.00251 * 359.97438 * 21 20 19 23 23 N 1.34783 * 119.99706 * 180.02562 * 21 20 19 24 24 C 1.37099 * 119.99559 * 179.97438 * 23 21 20 25 25 H 1.08005 * 120.00152 * 0.02562 * 24 23 21 26 26 C 1.38958 * 119.99911 * 179.97438 * 24 23 21 27 27 N 1.31405 * 119.99712 * 0.02562 * 26 24 23 28 28 Si 1.86799 * 119.99894 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.47294 * 0.02562 * 28 26 24 30 30 H 1.48498 * 109.47050 * 120.00572 * 28 26 24 31 31 H 1.48501 * 109.46701 * 240.00249 * 28 26 24 32 32 H 1.08997 * 109.47299 * 59.99735 * 1 2 3 33 33 H 1.09007 * 109.46924 * 299.99835 * 1 2 3 34 34 H 1.08999 * 109.46968 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.47299 * 120.00265 * 2 1 3 36 36 H 1.09001 * 109.47331 * 240.00120 * 2 1 3 37 37 H 1.08999 * 109.47387 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.46860 * 300.00384 * 5 3 2 39 39 H 1.09001 * 109.46832 * 59.99639 * 5 3 2 40 40 H 1.09000 * 109.47660 * 295.00266 * 6 3 2 41 41 H 1.09000 * 109.47138 * 55.00069 * 6 3 2 42 42 H 0.96999 * 120.00380 * 0.02562 * 9 7 6 43 43 H 1.09004 * 110.61512 * 237.01861 * 12 10 9 44 44 H 1.09001 * 110.61231 * 359.97438 * 12 10 9 45 45 H 1.09000 * 110.61479 * 190.23873 * 15 13 12 46 46 H 1.09001 * 110.61776 * 313.22190 * 15 13 12 47 47 H 1.08996 * 110.61478 * 118.50717 * 16 15 13 48 48 H 1.09006 * 110.61534 * 241.33634 * 16 15 13 49 49 H 1.09003 * 109.47379 * 189.87715 * 20 19 13 50 50 H 1.09005 * 109.47350 * 309.87759 * 20 19 13 51 51 H 0.96997 * 120.00308 * 359.97438 * 23 21 20 52 52 H 0.96997 * 120.00183 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5647 1.4444 -0.1257 7 6 4.0570 2.8634 -0.2492 8 8 3.2660 3.7827 -0.2374 9 7 5.3760 3.1107 -0.3729 10 6 5.8545 4.4903 -0.4924 11 1 5.2199 5.1663 0.0807 12 6 7.3271 4.5988 -0.0266 13 6 8.0784 5.0827 -1.3034 14 1 9.0471 5.5515 -1.1301 15 6 8.0881 3.8509 -2.2579 16 6 6.6154 3.7424 -2.7238 17 6 5.9087 4.9246 -1.9882 18 1 4.9622 5.2531 -2.4175 19 7 7.0230 5.9408 -1.9509 20 6 6.6671 7.0767 -1.0902 21 6 7.8186 8.0474 -1.0378 22 8 8.8360 7.8155 -1.6561 23 7 7.7184 9.1728 -0.3028 24 6 8.7662 10.0556 -0.2547 25 1 9.6718 9.8495 -0.8060 26 6 8.6628 11.2161 0.5025 27 7 7.5608 11.4671 1.1729 28 14 10.0902 12.4193 0.5675 29 1 11.2063 11.9089 -0.2686 30 1 9.6486 13.7395 0.0506 31 1 10.5501 12.5661 1.9718 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5139 0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 1.9983 3.1543 1.3072 38 1 0.5490 2.1252 1.3970 39 1 2.0699 1.5874 2.1492 40 1 4.0030 0.9836 0.7596 41 1 3.8570 0.8801 -1.0113 42 1 6.0086 2.3755 -0.3828 43 1 7.4230 5.3306 0.7756 44 1 7.7009 3.6262 0.2936 45 1 8.7472 4.0289 -3.1076 46 1 8.3877 2.9512 -1.7205 47 1 6.5446 3.8667 -3.8043 48 1 6.1860 2.7878 -2.4196 49 1 5.7877 7.5777 -1.4949 50 1 6.4494 6.7165 -0.0847 51 1 6.9050 9.3581 0.1920 52 1 7.4886 12.2770 1.7018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109206210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:21 Heat of formation + Delta-G solvation = -82.668174 kcal Electronic energy + Delta-G solvation = -30235.403172 eV Core-core repulsion = 26233.886293 eV Total energy + Delta-G solvation = -4001.516879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36942 -40.54172 -39.67171 -37.23797 -36.00753 -35.23775 -33.45904 -32.92285 -31.76824 -30.80986 -29.83728 -28.41561 -27.83628 -25.98426 -24.92632 -23.08824 -22.01602 -21.65396 -20.73616 -20.58367 -20.40457 -19.78905 -18.11590 -17.83987 -17.27129 -16.98454 -16.80983 -16.49476 -16.24287 -15.90476 -15.65444 -15.55974 -15.08070 -14.89826 -14.56227 -14.13770 -14.03756 -13.75249 -13.59918 -13.42594 -13.32534 -13.27083 -13.00074 -12.78380 -12.75969 -12.75043 -12.62645 -12.53250 -12.40915 -12.14780 -12.12109 -11.89056 -11.73808 -11.68466 -11.51246 -11.48675 -11.36114 -11.10963 -10.68849 -10.37420 -10.19972 -10.02930 -9.32314 -8.48110 -5.97207 1.34906 1.39717 1.54513 1.73311 2.01818 2.19671 2.27388 2.75766 3.17900 3.26455 3.54428 3.58175 3.79076 3.84796 3.90473 4.03923 4.11271 4.13086 4.19684 4.27670 4.33256 4.36941 4.41910 4.49425 4.49640 4.53678 4.66508 4.71782 4.72891 4.76882 4.81408 4.87221 4.92040 4.95187 5.02447 5.17073 5.19784 5.23765 5.25061 5.27760 5.30153 5.35519 5.39134 5.49400 5.58192 5.62839 5.76349 5.83467 6.04790 6.57757 6.64152 7.10645 7.37517 7.53538 8.08853 8.69774 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.002317 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.038144 B =12080.979093 C =13156.524859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.076 4.076 4 H 0.056 0.944 5 C -0.153 4.153 6 C -0.129 4.129 7 C 0.506 3.494 8 O -0.580 6.580 9 N -0.703 5.703 10 C 0.124 3.876 11 H 0.068 0.932 12 C -0.151 4.151 13 C 0.046 3.954 14 H 0.090 0.910 15 C -0.105 4.105 16 C -0.101 4.101 17 C 0.033 3.967 18 H 0.104 0.896 19 N -0.488 5.488 20 C 0.035 3.965 21 C 0.446 3.554 22 O -0.613 6.613 23 N -0.576 5.576 24 C -0.330 4.330 25 H 0.080 0.920 26 C -0.016 4.016 27 N -0.922 5.922 28 Si 0.995 3.005 29 H -0.272 1.272 30 H -0.272 1.272 31 H -0.270 1.270 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.417 0.583 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.066 0.934 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.070 0.930 51 H 0.394 0.606 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -27.525 -0.469 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.095 4.095 4 H 0.074 0.926 5 C -0.210 4.210 6 C -0.169 4.169 7 C 0.295 3.705 8 O -0.459 6.459 9 N -0.356 5.356 10 C 0.017 3.983 11 H 0.086 0.914 12 C -0.190 4.190 13 C -0.062 4.062 14 H 0.109 0.891 15 C -0.143 4.143 16 C -0.139 4.139 17 C -0.076 4.076 18 H 0.122 0.878 19 N -0.211 5.211 20 C -0.096 4.096 21 C 0.233 3.767 22 O -0.499 6.499 23 N -0.213 5.213 24 C -0.460 4.460 25 H 0.098 0.902 26 C -0.216 4.216 27 N -0.564 5.564 28 Si 0.819 3.181 29 H -0.196 1.196 30 H -0.197 1.197 31 H -0.195 1.195 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.130 0.870 45 H 0.079 0.921 46 H 0.119 0.881 47 H 0.084 0.916 48 H 0.116 0.884 49 H 0.112 0.888 50 H 0.088 0.912 51 H 0.227 0.773 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.367 -26.591 -1.320 28.223 hybrid contribution 0.105 1.149 1.231 1.687 sum -9.262 -25.442 -0.090 27.076 Atomic orbital electron populations 1.21835 0.96166 1.01871 1.01555 1.21550 0.95838 0.94711 1.02996 1.20889 0.93582 0.96789 0.98215 0.92589 1.21959 1.01205 1.00674 0.97176 1.21817 0.96928 0.91621 1.06507 1.21446 0.81830 0.92783 0.74465 1.90694 1.55698 1.48352 1.51169 1.45938 1.07805 1.07784 1.74076 1.22389 0.94578 0.84614 0.96756 0.91419 1.23453 0.93752 1.03490 0.98349 1.24406 0.95678 0.93301 0.92822 0.89146 1.22600 0.96904 0.96212 0.98582 1.22576 0.94414 0.97010 0.99893 1.24949 0.94690 0.92542 0.95461 0.87757 1.67553 1.06232 1.04497 1.42815 1.21962 0.96275 0.93283 0.98121 1.20591 0.89921 0.83695 0.82449 1.90467 1.33534 1.77399 1.48451 1.41958 1.16893 1.18870 1.43562 1.19708 0.96363 1.01054 1.28865 0.90154 1.26095 1.00645 0.99309 0.95517 1.69691 1.27671 1.27938 1.31060 0.84837 0.77470 0.77489 0.78326 1.19632 1.19704 1.19498 0.93414 0.92995 0.91887 0.90891 0.90699 0.93769 0.92837 0.92295 0.86629 0.86087 0.74483 0.92353 0.87033 0.92078 0.88136 0.91565 0.88378 0.88819 0.91209 0.77297 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.67 71.98 0.70 -0.97 16 2 C -0.11 -1.05 5.40 30.59 0.17 -0.88 16 3 C -0.08 -1.05 2.04 -10.80 -0.02 -1.07 16 4 H 0.06 1.04 7.96 -2.39 -0.02 1.02 16 5 C -0.15 -2.65 8.69 71.98 0.63 -2.03 16 6 C -0.13 -1.33 5.17 29.85 0.15 -1.17 16 7 C 0.51 9.45 7.55 87.66 0.66 10.11 16 8 O -0.58 -16.70 13.63 -3.04 -0.04 -16.74 16 9 N -0.70 -10.94 3.71 -434.93 -1.61 -12.56 16 10 C 0.12 2.88 2.32 46.60 0.11 2.99 16 11 H 0.07 1.98 6.81 -2.39 -0.02 1.96 16 12 C -0.15 -3.55 5.39 32.20 0.17 -3.38 16 13 C 0.05 1.38 4.25 46.14 0.20 1.57 16 14 H 0.09 3.40 6.98 -2.39 -0.02 3.39 16 15 C -0.11 -2.21 6.43 32.20 0.21 -2.00 16 16 C -0.10 -1.96 6.31 32.32 0.20 -1.76 16 17 C 0.03 0.86 4.87 46.21 0.23 1.08 16 18 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 19 N -0.49 -16.62 5.30 -807.73 -4.28 -20.90 16 20 C 0.04 1.36 5.10 85.56 0.44 1.80 16 21 C 0.45 22.25 7.58 87.66 0.66 22.92 16 22 O -0.61 -34.58 14.46 -3.07 -0.04 -34.63 16 23 N -0.58 -30.87 5.29 -306.97 -1.62 -32.49 16 24 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 25 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 26 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 27 N -0.92 -51.36 13.05 21.66 0.28 -51.07 16 28 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 29 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 30 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 31 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.61 6.57 -2.38 -0.02 0.59 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.04 1.06 5.95 -2.39 -0.01 1.04 16 38 H 0.05 0.90 6.56 -2.39 -0.02 0.88 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.42 3.46 7.92 -92.71 -0.73 2.73 16 43 H 0.06 1.63 7.19 -2.38 -0.02 1.61 16 44 H 0.11 1.80 7.39 -2.39 -0.02 1.78 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.10 1.37 7.82 -2.39 -0.02 1.36 16 47 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.10 1.29 6.40 -2.38 -0.02 1.27 16 49 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 50 H 0.07 2.47 4.87 -2.38 -0.01 2.46 16 51 H 0.39 20.40 7.90 -92.71 -0.73 19.67 16 52 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -75.26 397.58 -0.04 -75.30 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.53 Total: 38.82 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 5.78 Total: 8.33 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -7.23 Total: -117.02 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.09 Total: -51.36 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -75.26 -0.04 -75.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109206210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.371 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds