Wall clock time and date at job start Tue Mar 31 2020 20:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46888 * 2 1 4 4 H 1.08997 * 109.47023 * 307.57975 * 3 2 1 5 5 C 1.53007 * 109.47146 * 187.58601 * 3 2 1 6 6 C 1.52998 * 109.47235 * 67.58595 * 3 2 1 7 7 H 1.09000 * 109.46758 * 173.16154 * 6 3 2 8 8 N 1.46493 * 109.47270 * 53.15562 * 6 3 2 9 9 C 1.34778 * 119.99557 * 97.68566 * 8 6 3 10 10 C 1.50710 * 119.99672 * 185.17255 * 9 8 6 11 11 O 1.21281 * 120.00759 * 5.17260 * 9 8 6 12 12 C 1.50700 * 109.47061 * 293.15453 * 6 3 2 13 13 O 1.21279 * 120.00195 * 117.75588 * 12 6 3 14 14 N 1.34784 * 120.00099 * 297.75983 * 12 6 3 15 15 C 1.46502 * 119.99678 * 184.45934 * 14 12 6 16 16 H 1.08999 * 110.68384 * 321.91970 * 15 14 12 17 17 C 1.55869 * 110.09931 * 85.78742 * 15 14 12 18 18 C 1.55847 * 103.53054 * 118.86007 * 17 15 14 19 19 H 1.08996 * 116.12608 * 158.54187 * 18 17 15 20 20 C 1.55840 * 105.06412 * 287.57289 * 18 17 15 21 21 C 1.54852 * 103.44839 * 71.82311 * 20 18 17 22 22 C 1.55845 * 103.44600 * 359.97438 * 21 20 18 23 23 H 1.08992 * 115.55864 * 158.81288 * 22 21 20 24 24 N 1.50238 * 101.04924 * 32.33472 * 18 17 15 25 25 C 1.36936 * 130.84016 * 126.04969 * 24 18 17 26 26 H 1.07997 * 119.99692 * 179.97438 * 25 24 18 27 27 C 1.38810 * 120.00001 * 359.97438 * 25 24 18 28 28 N 1.31623 * 120.00019 * 359.97438 * 27 25 24 29 29 Si 1.86793 * 120.00165 * 179.97438 * 27 25 24 30 30 H 1.48498 * 109.47202 * 59.99306 * 29 27 25 31 31 H 1.48499 * 109.47600 * 179.97438 * 29 27 25 32 32 H 1.48508 * 109.47010 * 299.99742 * 29 27 25 33 33 H 1.09006 * 109.47277 * 284.05409 * 1 2 3 34 34 H 1.08994 * 109.47036 * 44.05858 * 1 2 3 35 35 H 1.08997 * 109.46572 * 164.06039 * 1 2 3 36 36 H 1.08994 * 109.47445 * 239.99626 * 2 1 3 37 37 H 1.09004 * 109.47505 * 119.99730 * 2 1 3 38 38 H 1.09002 * 109.46511 * 306.19316 * 5 3 2 39 39 H 1.08997 * 109.46889 * 66.19473 * 5 3 2 40 40 H 1.08996 * 109.47112 * 186.19172 * 5 3 2 41 41 H 0.97001 * 120.00181 * 277.68536 * 8 6 3 42 42 H 1.09001 * 109.46992 * 59.99891 * 10 9 8 43 43 H 1.08996 * 109.46897 * 180.02562 * 10 9 8 44 44 H 1.09001 * 109.46877 * 299.99826 * 10 9 8 45 45 H 0.96992 * 119.99589 * 4.45301 * 14 12 6 46 46 H 1.09006 * 111.10070 * 0.09482 * 17 15 14 47 47 H 1.08995 * 110.06896 * 237.13571 * 17 15 14 48 48 H 1.09000 * 110.62793 * 190.31321 * 20 18 17 49 49 H 1.09006 * 110.62854 * 313.17156 * 20 18 17 50 50 H 1.08999 * 110.62512 * 241.51069 * 21 20 18 51 51 H 1.09000 * 110.62784 * 118.48860 * 21 20 18 52 52 H 0.96988 * 120.00013 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5701 1.9940 -0.8144 5 6 3.5581 1.4468 -0.1904 6 6 1.6914 2.1067 1.3335 7 1 2.1582 3.0905 1.3823 8 7 2.1840 1.2771 2.4358 9 6 3.3607 1.5685 3.0248 10 6 3.9238 0.6499 4.0785 11 8 3.9664 2.5700 2.7070 12 6 0.1958 2.2543 1.4454 13 8 -0.4050 1.6860 2.3324 14 7 -0.4742 3.0180 0.5595 15 6 -1.9127 3.2407 0.7251 16 1 -2.4040 2.3352 1.0810 17 6 -2.1615 4.4437 1.6845 18 6 -2.9326 5.4656 0.7957 19 1 -3.5219 6.2139 1.3256 20 6 -1.8675 6.0259 -0.1944 21 6 -1.6076 4.8384 -1.1537 22 6 -2.5506 3.7220 -0.6122 23 1 -2.8037 2.9350 -1.3225 24 7 -3.7033 4.5410 -0.1034 25 6 -5.0434 4.4675 -0.3755 26 1 -5.4147 3.7213 -1.0623 27 6 -5.9244 5.3519 0.2316 28 7 -5.4718 6.2608 1.0690 29 14 -7.7522 5.2520 -0.1400 30 1 -8.2638 3.9130 0.2478 31 1 -8.4718 6.2984 0.6297 32 1 -7.9744 5.4649 -1.5929 33 1 -0.3634 0.2496 0.9969 34 1 -0.3633 0.7385 -0.7146 35 1 -0.3632 -0.9882 -0.2822 36 1 1.8934 -0.5139 -0.8899 37 1 1.8934 -0.5138 0.8900 38 1 4.0201 0.8051 0.5598 39 1 3.8004 1.0748 -1.1859 40 1 3.9352 2.4636 -0.0808 41 1 1.6633 0.5180 2.7418 42 1 4.0816 -0.3402 3.6506 43 1 4.8737 1.0469 4.4366 44 1 3.2233 0.5788 4.9105 45 1 -0.0039 3.4200 -0.1874 46 1 -1.2202 4.8702 2.0314 47 1 -2.7754 4.1285 2.5281 48 1 -2.2640 6.8815 -0.7411 49 1 -0.9560 6.3001 0.3369 50 1 -0.5663 4.5211 -1.0985 51 1 -1.8752 5.1051 -2.1762 52 1 -6.0874 6.8785 1.4935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110134070.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:37 Heat of formation + Delta-G solvation = -28.103355 kcal Electronic energy + Delta-G solvation = -31742.107370 eV Core-core repulsion = 27742.956599 eV Total energy + Delta-G solvation = -3999.150771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.94927 -39.59782 -38.50876 -36.50074 -34.14120 -33.49082 -32.35497 -30.88928 -29.86311 -29.41654 -29.01829 -28.18983 -26.46623 -24.13208 -23.57315 -21.65658 -21.28822 -20.71859 -19.82082 -19.76698 -18.46481 -17.77657 -17.10259 -16.88292 -16.23410 -15.85434 -15.47622 -14.98309 -14.86985 -14.37438 -14.23658 -14.02163 -13.85876 -13.68178 -13.42326 -13.12638 -12.81147 -12.71703 -12.39359 -12.35432 -12.14855 -12.05194 -11.86279 -11.69401 -11.59957 -11.16318 -11.15314 -10.96123 -10.88371 -10.87507 -10.82560 -10.61268 -10.37946 -10.14529 -10.06885 -9.96143 -9.80514 -9.34837 -9.13138 -9.10185 -8.97638 -8.56465 -6.98841 -5.75987 -3.15680 2.44227 2.73800 2.86693 3.37205 3.41462 3.42862 3.52098 4.40060 4.52068 4.53583 4.59797 4.70729 4.94579 5.02438 5.09792 5.12048 5.24073 5.29378 5.29989 5.38671 5.50799 5.53980 5.58716 5.60731 5.61421 5.70733 5.74097 5.87820 5.93839 5.95576 5.98764 6.03262 6.10589 6.11922 6.23321 6.25537 6.33232 6.36535 6.51527 6.52758 6.69102 6.78172 6.89629 6.98422 7.27351 7.34272 7.45991 7.71272 7.76734 8.05484 8.14012 8.38544 9.05456 9.68539 10.47600 11.32922 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.002951 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.732753 B = 9485.558948 C = 9664.083464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.116 4.116 3 C -0.099 4.099 4 H 0.084 0.916 5 C -0.140 4.140 6 C 0.124 3.876 7 H 0.118 0.882 8 N -0.706 5.706 9 C 0.514 3.486 10 C -0.174 4.174 11 O -0.547 6.547 12 C 0.515 3.485 13 O -0.542 6.542 14 N -0.711 5.711 15 C 0.129 3.871 16 H 0.085 0.915 17 C -0.139 4.139 18 C 0.153 3.847 19 H 0.153 0.847 20 C -0.137 4.137 21 C -0.132 4.132 22 C 0.129 3.871 23 H 0.088 0.912 24 N -0.587 5.587 25 C -0.216 4.216 26 H 0.079 0.921 27 C -0.009 4.009 28 N -0.921 5.921 29 Si 0.918 3.082 30 H -0.285 1.285 31 H -0.290 1.290 32 H -0.286 1.286 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.409 0.591 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.397 0.603 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.047 0.953 50 H 0.046 0.954 51 H 0.058 0.942 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.012 -11.168 -0.620 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.153 4.153 3 C -0.119 4.119 4 H 0.102 0.898 5 C -0.198 4.198 6 C 0.014 3.986 7 H 0.136 0.864 8 N -0.359 5.359 9 C 0.301 3.699 10 C -0.233 4.233 11 O -0.425 6.425 12 C 0.301 3.699 13 O -0.420 6.420 14 N -0.364 5.364 15 C 0.023 3.977 16 H 0.103 0.897 17 C -0.180 4.180 18 C 0.047 3.953 19 H 0.170 0.830 20 C -0.176 4.176 21 C -0.172 4.172 22 C 0.020 3.980 23 H 0.106 0.894 24 N -0.307 5.307 25 C -0.344 4.344 26 H 0.097 0.903 27 C -0.205 4.205 28 N -0.568 5.568 29 Si 0.748 3.252 30 H -0.212 1.212 31 H -0.215 1.215 32 H -0.212 1.212 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.246 0.754 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.235 0.765 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.077 0.923 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.658 -10.732 -0.186 20.664 hybrid contribution -0.930 -0.263 -0.426 1.057 sum 16.728 -10.995 -0.612 20.027 Atomic orbital electron populations 1.22334 0.95229 1.01940 1.04588 1.21550 0.96403 0.95378 1.01992 1.21619 0.97463 0.97317 0.95472 0.89768 1.21778 0.94150 1.02575 1.01268 1.20969 0.92228 0.97644 0.87716 0.86401 1.45675 1.22065 1.32776 1.35398 1.20792 0.80600 0.86353 0.82139 1.21910 1.03206 0.99988 0.98233 1.90716 1.59893 1.27495 1.64347 1.20411 0.88993 0.78544 0.81983 1.90668 1.69492 1.47103 1.34759 1.46498 1.10729 1.50668 1.28544 1.22868 0.77513 0.98517 0.98761 0.89712 1.23535 0.99224 0.96918 0.98298 1.23791 0.88804 0.92860 0.89851 0.82976 1.23031 0.98855 0.97185 0.98527 1.22973 0.96922 0.97844 0.99471 1.23047 0.88757 0.93393 0.92787 0.89442 1.46458 1.01015 1.33952 1.49275 1.18980 0.80186 1.13631 1.21590 0.90326 1.24715 0.98201 0.98180 0.99402 1.69441 1.33181 1.21479 1.32708 0.86106 0.84378 0.77172 0.77546 1.21181 1.21547 1.21221 0.89984 0.92259 0.92996 0.91882 0.91907 0.92894 0.92501 0.91948 0.75447 0.89405 0.88946 0.89255 0.76494 0.92987 0.92250 0.92591 0.93441 0.93595 0.92312 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 8.52 37.16 0.32 -1.71 16 2 C -0.12 -1.04 5.27 -26.73 -0.14 -1.18 16 3 C -0.10 -0.91 2.34 -90.62 -0.21 -1.12 16 4 H 0.08 0.73 7.29 -51.93 -0.38 0.35 16 5 C -0.14 -1.24 8.40 37.16 0.31 -0.93 16 6 C 0.12 1.40 2.34 -69.09 -0.16 1.23 16 7 H 0.12 1.47 7.14 -51.93 -0.37 1.10 16 8 N -0.71 -7.31 3.66 -54.93 -0.20 -7.51 16 9 C 0.51 5.51 6.76 -10.98 -0.07 5.44 16 10 C -0.17 -1.16 10.32 36.01 0.37 -0.79 16 11 O -0.55 -7.88 16.19 5.56 0.09 -7.79 16 12 C 0.52 7.16 4.45 -10.98 -0.05 7.11 16 13 O -0.54 -9.20 13.95 5.56 0.08 -9.12 16 14 N -0.71 -9.85 4.37 -50.89 -0.22 -10.08 16 15 C 0.13 2.30 3.19 -64.91 -0.21 2.10 16 16 H 0.08 1.69 7.68 -51.93 -0.40 1.29 16 17 C -0.14 -2.81 6.22 -23.68 -0.15 -2.96 16 18 C 0.15 3.46 4.72 -62.80 -0.30 3.16 16 19 H 0.15 3.97 5.52 -51.93 -0.29 3.69 16 20 C -0.14 -2.59 6.44 -24.24 -0.16 -2.75 16 21 C -0.13 -2.20 6.33 -24.24 -0.15 -2.35 16 22 C 0.13 2.43 5.30 -62.81 -0.33 2.10 16 23 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 24 N -0.59 -14.03 2.98 -145.83 -0.43 -14.47 16 25 C -0.22 -5.76 10.59 -15.06 -0.16 -5.92 16 26 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 27 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 28 N -0.92 -25.96 10.47 55.49 0.58 -25.38 16 29 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 31 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 32 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 33 H 0.08 1.09 4.66 -51.93 -0.24 0.85 16 34 H 0.06 0.68 7.46 -51.93 -0.39 0.29 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 37 H 0.06 0.54 6.83 -51.93 -0.35 0.18 16 38 H 0.05 0.49 7.20 -51.93 -0.37 0.11 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 41 H 0.41 3.89 7.58 -40.82 -0.31 3.58 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.40 4.70 5.27 -40.82 -0.22 4.49 16 46 H 0.05 0.98 7.67 -51.93 -0.40 0.58 16 47 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 50 H 0.05 0.61 5.41 -51.93 -0.28 0.33 16 51 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 52 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -31.22 392.34 -9.00 -40.22 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.60 Total: 10.51 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.19 Total: 1.10 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.28 Total: -57.43 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.17 Total: -16.91 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.22 -9.00 -40.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110134070.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.117 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds