Wall clock time and date at job start Tue Mar 31 2020 20:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47037 * 2 1 4 4 H 1.09002 * 109.46754 * 55.00338 * 3 2 1 5 5 C 1.53004 * 109.47546 * 295.00317 * 3 2 1 6 6 C 1.52997 * 109.47325 * 175.00053 * 3 2 1 7 7 C 1.50705 * 109.47472 * 185.00404 * 6 3 2 8 8 O 1.21285 * 119.99484 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00231 * 180.02562 * 7 6 3 10 10 C 1.46507 * 119.99659 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.54427 * 40.33945 * 10 9 7 12 12 C 1.54834 * 110.74900 * 277.37587 * 10 9 7 13 13 C 1.55849 * 103.51992 * 241.43265 * 12 10 9 14 14 H 1.08999 * 115.57617 * 159.64957 * 13 12 10 15 15 C 1.55852 * 105.02789 * 288.26993 * 13 12 10 16 16 C 1.56672 * 103.67353 * 71.50050 * 15 13 12 17 17 C 1.55848 * 102.67080 * 0.33567 * 16 15 13 18 18 H 1.08996 * 115.58065 * 159.16997 * 17 16 15 19 19 N 1.50644 * 101.02759 * 32.99315 * 13 12 10 20 20 C 1.46901 * 110.36418 * 62.12744 * 19 13 12 21 21 C 1.50701 * 109.46915 * 69.34232 * 20 19 13 22 22 O 1.21297 * 120.00103 * 0.02562 * 21 20 19 23 23 N 1.34778 * 119.99848 * 179.97438 * 21 20 19 24 24 C 1.37101 * 119.99801 * 179.97438 * 23 21 20 25 25 H 1.07999 * 120.00102 * 359.97438 * 24 23 21 26 26 C 1.38952 * 120.00000 * 180.02562 * 24 23 21 27 27 N 1.31413 * 119.99717 * 359.97438 * 26 24 23 28 28 Si 1.86796 * 120.00007 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.47443 * 89.99808 * 28 26 24 30 30 H 1.48498 * 109.47049 * 209.99973 * 28 26 24 31 31 H 1.48498 * 109.47208 * 329.99999 * 28 26 24 32 32 H 1.09003 * 109.47297 * 59.99911 * 1 2 3 33 33 H 1.09005 * 109.46892 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47532 * 299.99436 * 1 2 3 35 35 H 1.09006 * 109.47578 * 240.00350 * 2 1 3 36 36 H 1.08993 * 109.47471 * 120.00036 * 2 1 3 37 37 H 1.09001 * 109.46822 * 59.99516 * 5 3 2 38 38 H 1.09000 * 109.47065 * 179.97438 * 5 3 2 39 39 H 1.08998 * 109.46642 * 299.99966 * 5 3 2 40 40 H 1.08998 * 109.47519 * 65.00190 * 6 3 2 41 41 H 1.09001 * 109.47282 * 305.00174 * 6 3 2 42 42 H 0.96993 * 119.99966 * 0.02562 * 9 7 6 43 43 H 1.08999 * 110.61127 * 359.94134 * 12 10 9 44 44 H 1.08999 * 110.61102 * 122.76589 * 12 10 9 45 45 H 1.09002 * 110.60756 * 190.23508 * 15 13 12 46 46 H 1.09002 * 110.61530 * 313.22120 * 15 13 12 47 47 H 1.09001 * 110.77720 * 242.22235 * 16 15 13 48 48 H 1.09002 * 111.25489 * 118.66973 * 16 15 13 49 49 H 1.09004 * 109.46888 * 189.33903 * 20 19 13 50 50 H 1.08998 * 109.47131 * 309.34134 * 20 19 13 51 51 H 0.97000 * 120.00349 * 359.97438 * 23 21 20 52 52 H 0.96998 * 119.99722 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 3.5647 1.4444 0.1257 7 6 4.0569 2.8634 0.2493 8 8 3.2658 3.7827 0.2385 9 7 5.3760 3.1109 0.3719 10 6 5.8544 4.4905 0.4916 11 1 5.1928 5.0704 1.1351 12 6 5.9756 5.1519 -0.9032 13 6 7.4924 5.4923 -1.0144 14 1 7.8674 5.6453 -2.0263 15 6 7.7138 6.6786 -0.0281 16 6 7.5858 6.0142 1.3850 17 6 7.3142 4.5196 1.0367 18 1 7.5351 3.8042 1.8287 19 7 8.1009 4.3541 -0.2374 20 6 7.7925 3.0715 -0.8836 21 6 8.5420 2.9728 -2.1873 22 8 9.2627 3.8814 -2.5428 23 7 8.4124 1.8745 -2.9576 24 6 9.0939 1.7850 -4.1439 25 1 9.7343 2.5947 -4.4612 26 6 8.9599 0.6529 -4.9384 27 7 8.1804 -0.3321 -4.5525 28 14 9.8890 0.5306 -6.5543 29 1 11.2141 -0.0964 -6.3172 30 1 9.1126 -0.2993 -7.5101 31 1 10.0790 1.8903 -7.1202 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5137 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 0.5488 2.1253 -1.3968 38 1 1.9981 3.1545 -1.3070 39 1 2.0697 1.5876 -2.1491 40 1 4.0029 0.9837 -0.7596 41 1 3.8570 0.8801 1.0113 42 1 6.0087 2.3758 0.3803 43 1 5.6807 4.4533 -1.6861 44 1 5.3720 6.0582 -0.9519 45 1 8.7056 7.1100 -0.1633 46 1 6.9427 7.4374 -0.1613 47 1 6.7470 6.4381 1.9370 48 1 8.5104 6.1138 1.9537 49 1 8.0929 2.2533 -0.2290 50 1 6.7212 3.0093 -1.0748 51 1 7.8370 1.1474 -2.6728 52 1 8.0871 -1.1225 -5.1069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110491368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:25 Heat of formation + Delta-G solvation = -54.661566 kcal Electronic energy + Delta-G solvation = -31016.269095 eV Core-core repulsion = 27015.966674 eV Total energy + Delta-G solvation = -4000.302421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35057 -39.45258 -37.83118 -36.44958 -34.29719 -33.95281 -31.90997 -31.13793 -31.00647 -29.63067 -28.93609 -27.33649 -26.40715 -24.31420 -24.08713 -22.18366 -20.70866 -20.37458 -20.11353 -19.57319 -18.80845 -17.82851 -17.16932 -16.59931 -16.21921 -15.61527 -15.40559 -15.01757 -14.91913 -14.72070 -14.43930 -14.14214 -13.88660 -13.81026 -13.34609 -13.17780 -12.86794 -12.64547 -12.30531 -12.20559 -12.04125 -11.98152 -11.88031 -11.74675 -11.49312 -11.44131 -11.40276 -11.30078 -11.11563 -10.97732 -10.90567 -10.72513 -10.66195 -10.58726 -10.41118 -10.28696 -10.23582 -9.61571 -9.51644 -9.03794 -8.55950 -8.10697 -7.97484 -6.43960 -3.84402 2.63460 3.11334 3.16339 3.25195 3.30792 3.83894 3.91415 4.18474 4.54475 4.62246 4.63902 4.69859 4.73967 4.76630 5.02704 5.05500 5.13863 5.15455 5.21055 5.28188 5.33082 5.36114 5.40887 5.47461 5.54605 5.57272 5.57950 5.59682 5.66510 5.71638 5.74780 5.86383 5.86801 5.93699 5.96248 5.98974 6.06739 6.10166 6.17226 6.24343 6.25889 6.32163 6.41577 6.47331 6.55200 6.83934 7.16138 7.43746 7.53327 8.04061 8.21621 8.59435 9.16398 9.51970 10.03943 10.73853 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007443 B = 0.004162 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3760.906369 B = 6726.176285 C = 9884.520879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.073 4.073 4 H 0.075 0.925 5 C -0.156 4.156 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.537 6.537 9 N -0.727 5.727 10 C 0.114 3.886 11 H 0.092 0.908 12 C -0.163 4.163 13 C 0.058 3.942 14 H 0.129 0.871 15 C -0.117 4.117 16 C -0.109 4.109 17 C 0.033 3.967 18 H 0.115 0.885 19 N -0.460 5.460 20 C 0.003 3.997 21 C 0.447 3.553 22 O -0.578 6.578 23 N -0.564 5.564 24 C -0.298 4.298 25 H 0.102 0.898 26 C 0.023 3.977 27 N -0.902 5.902 28 Si 0.928 3.072 29 H -0.278 1.278 30 H -0.284 1.284 31 H -0.270 1.270 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.402 0.598 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.390 0.610 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 3.153 13.242 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.092 4.092 4 H 0.093 0.907 5 C -0.213 4.213 6 C -0.182 4.182 7 C 0.301 3.699 8 O -0.414 6.414 9 N -0.381 5.381 10 C 0.008 3.992 11 H 0.110 0.890 12 C -0.203 4.203 13 C -0.051 4.051 14 H 0.146 0.854 15 C -0.155 4.155 16 C -0.147 4.147 17 C -0.077 4.077 18 H 0.133 0.867 19 N -0.182 5.182 20 C -0.130 4.130 21 C 0.232 3.768 22 O -0.462 6.462 23 N -0.201 5.201 24 C -0.428 4.428 25 H 0.120 0.880 26 C -0.178 4.178 27 N -0.544 5.544 28 Si 0.756 3.244 29 H -0.204 1.204 30 H -0.209 1.209 31 H -0.194 1.194 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.239 0.761 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.091 0.909 51 H 0.223 0.777 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.655 4.234 12.950 17.297 hybrid contribution -0.485 -1.286 -0.810 1.595 sum -11.140 2.948 12.140 16.739 Atomic orbital electron populations 1.21800 0.95843 1.01369 1.01969 1.21605 0.96073 0.96153 1.02104 1.20882 0.92602 0.95938 0.99741 0.90667 1.22004 1.01010 1.02173 0.96077 1.21830 0.97988 0.93872 1.04548 1.20791 0.82032 0.91770 0.75340 1.90649 1.54664 1.46731 1.49391 1.46566 1.07769 1.09001 1.74793 1.22826 0.96407 0.82589 0.97368 0.88995 1.23760 0.98585 1.01421 0.96537 1.24528 0.90251 0.91176 0.99112 0.85377 1.22940 1.01988 0.96669 0.93857 1.22819 1.01705 0.92882 0.97287 1.24808 0.89313 0.98639 0.94912 0.86727 1.67642 1.47231 1.01505 1.01821 1.22543 1.00153 0.93504 0.96763 1.19651 0.86538 0.84550 0.86049 1.90511 1.42266 1.39487 1.73920 1.41835 1.42317 1.16634 1.19323 1.19688 1.23754 1.03624 0.95715 0.87974 1.25230 0.97454 0.95263 0.99877 1.69601 1.38142 1.07434 1.39200 0.85880 0.79070 0.78452 0.81044 1.20399 1.20944 1.19441 0.92388 0.92931 0.92893 0.91678 0.92078 0.92859 0.90825 0.93120 0.88418 0.88980 0.76051 0.90952 0.90582 0.90856 0.91558 0.91299 0.90587 0.89768 0.90935 0.77678 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 37.15 0.36 -0.89 16 2 C -0.12 -1.06 5.40 -26.73 -0.14 -1.21 16 3 C -0.07 -0.75 2.04 -90.62 -0.18 -0.93 16 4 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 5 C -0.16 -1.81 8.69 37.16 0.32 -1.48 16 6 C -0.14 -1.44 5.17 -27.88 -0.14 -1.58 16 7 C 0.51 6.49 7.51 -10.98 -0.08 6.41 16 8 O -0.54 -8.40 13.75 5.55 0.08 -8.32 16 9 N -0.73 -8.50 3.76 -51.40 -0.19 -8.69 16 10 C 0.11 1.41 2.47 -65.44 -0.16 1.25 16 11 H 0.09 1.17 7.45 -51.93 -0.39 0.78 16 12 C -0.16 -2.33 5.46 -24.24 -0.13 -2.46 16 13 C 0.06 0.90 4.21 -62.56 -0.26 0.64 16 14 H 0.13 2.42 6.90 -51.93 -0.36 2.06 16 15 C -0.12 -1.45 6.48 -23.23 -0.15 -1.60 16 16 C -0.11 -1.17 6.58 -23.23 -0.15 -1.32 16 17 C 0.03 0.39 4.59 -62.56 -0.29 0.10 16 18 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 19 N -0.46 -7.31 5.36 -207.01 -1.11 -8.41 16 20 C 0.00 0.04 4.02 -4.97 -0.02 0.02 16 21 C 0.45 10.26 7.56 -10.98 -0.08 10.18 16 22 O -0.58 -15.32 14.38 5.54 0.08 -15.24 16 23 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 24 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 25 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 26 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 27 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 28 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 31 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 32 H 0.06 0.49 6.57 -51.93 -0.34 0.14 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 38 H 0.07 1.03 5.95 -51.93 -0.31 0.72 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.40 4.21 6.48 -40.82 -0.26 3.94 16 43 H 0.07 1.19 7.03 -51.93 -0.37 0.83 16 44 H 0.08 1.03 7.82 -51.93 -0.41 0.62 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 47 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 1.26 8.00 -51.93 -0.42 0.85 16 50 H 0.07 1.14 3.50 -51.93 -0.18 0.95 16 51 H 0.39 9.13 7.90 -40.82 -0.32 8.80 16 52 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -31.72 396.11 -9.55 -41.27 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -8.65 Total: 15.50 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.36 Total: -0.68 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.64 Total: -54.35 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.16 Total: -23.56 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.72 -9.55 -41.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110491368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.393 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds