Wall clock time and date at job start Tue Mar 31 2020 20:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47146 * 2 1 4 4 H 1.08997 * 109.47326 * 305.00280 * 3 2 1 5 5 C 1.53007 * 109.47057 * 65.00064 * 3 2 1 6 6 C 1.52997 * 109.47309 * 185.00017 * 3 2 1 7 7 C 1.50705 * 109.47472 * 175.00376 * 6 3 2 8 8 O 1.21285 * 119.99484 * 0.02562 * 7 6 3 9 9 N 1.34773 * 120.00231 * 180.02562 * 7 6 3 10 10 C 1.46507 * 119.99659 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.54427 * 40.33945 * 10 9 7 12 12 C 1.54834 * 110.74900 * 277.37587 * 10 9 7 13 13 C 1.55839 * 103.52074 * 241.43348 * 12 10 9 14 14 H 1.09000 * 115.58237 * 159.65035 * 13 12 10 15 15 C 1.55857 * 105.02997 * 288.27042 * 13 12 10 16 16 C 1.56672 * 103.67304 * 71.49906 * 15 13 12 17 17 C 1.55848 * 102.67080 * 0.33887 * 16 15 13 18 18 H 1.08997 * 115.58468 * 159.16638 * 17 16 15 19 19 N 1.50646 * 101.03084 * 32.99155 * 13 12 10 20 20 C 1.46901 * 110.36152 * 62.12787 * 19 13 12 21 21 C 1.50701 * 109.46915 * 69.34504 * 20 19 13 22 22 O 1.21297 * 120.00103 * 0.02562 * 21 20 19 23 23 N 1.34778 * 120.00177 * 180.02562 * 21 20 19 24 24 C 1.37095 * 120.00294 * 180.02562 * 23 21 20 25 25 H 1.07999 * 119.99938 * 359.97438 * 24 23 21 26 26 C 1.38952 * 120.00164 * 179.97438 * 24 23 21 27 27 N 1.31414 * 120.00010 * 179.97438 * 26 24 23 28 28 Si 1.86800 * 119.99918 * 359.97438 * 26 24 23 29 29 H 1.48501 * 109.46708 * 90.00005 * 28 26 24 30 30 H 1.48493 * 109.47275 * 210.00251 * 28 26 24 31 31 H 1.48497 * 109.47069 * 330.00293 * 28 26 24 32 32 H 1.09006 * 109.47239 * 60.00073 * 1 2 3 33 33 H 1.09005 * 109.46856 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47243 * 299.99748 * 1 2 3 35 35 H 1.09007 * 109.47089 * 240.00473 * 2 1 3 36 36 H 1.08997 * 109.47499 * 120.00467 * 2 1 3 37 37 H 1.09001 * 109.47126 * 300.00316 * 5 3 2 38 38 H 1.08997 * 109.46876 * 59.99940 * 5 3 2 39 39 H 1.08999 * 109.47325 * 179.97438 * 5 3 2 40 40 H 1.08998 * 109.47519 * 55.00161 * 6 3 2 41 41 H 1.09001 * 109.47282 * 295.00146 * 6 3 2 42 42 H 0.96993 * 119.99966 * 0.02562 * 9 7 6 43 43 H 1.08999 * 110.61127 * 359.94134 * 12 10 9 44 44 H 1.09003 * 110.60787 * 122.91871 * 12 10 9 45 45 H 1.09002 * 110.61052 * 190.23480 * 15 13 12 46 46 H 1.09002 * 110.61279 * 313.22123 * 15 13 12 47 47 H 1.09001 * 110.77720 * 242.22555 * 16 15 13 48 48 H 1.09002 * 111.25489 * 118.67293 * 16 15 13 49 49 H 1.08995 * 109.46978 * 189.33985 * 20 19 13 50 50 H 1.08998 * 109.47131 * 309.34405 * 20 19 13 51 51 H 0.97007 * 119.99796 * 359.97438 * 23 21 20 52 52 H 0.96998 * 120.00005 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 6 4.0570 2.8633 -0.2492 8 8 3.2660 3.7827 -0.2372 9 7 5.3760 3.1108 -0.3728 10 6 5.8543 4.4903 -0.4933 11 1 5.3010 5.1470 0.1780 12 6 5.7402 4.9846 -1.9562 13 6 7.2152 5.2952 -2.3519 14 1 7.4187 5.3265 -3.4223 15 6 7.5832 6.5856 -1.5590 16 6 7.6937 6.0905 -0.0767 17 6 7.3832 4.5683 -0.2006 18 1 7.7371 3.9472 0.6222 19 7 7.9531 4.2489 -1.5581 20 6 7.5556 2.9031 -1.9925 21 6 8.0834 2.6470 -3.3806 22 8 8.7278 3.5014 -3.9517 23 7 7.8396 1.4686 -3.9876 24 6 8.3202 1.2354 -5.2502 25 1 8.8939 1.9962 -5.7586 26 6 8.0692 0.0203 -5.8757 27 7 8.5295 -0.2030 -7.0862 28 14 7.0775 -1.2958 -4.9960 29 1 5.6362 -1.1205 -5.3077 30 1 7.5227 -2.6375 -5.4504 31 1 7.2852 -1.1753 -3.5306 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 0.5489 2.1251 1.3970 38 1 2.0698 1.5874 2.1492 39 1 1.9989 3.1540 1.3077 40 1 3.8571 0.8801 -1.0113 41 1 4.0029 0.9835 0.7596 42 1 6.0085 2.3755 -0.3827 43 1 5.3282 4.2028 -2.5943 44 1 5.1303 5.8864 -2.0100 45 1 8.5356 6.9889 -1.9032 46 1 6.7935 7.3312 -1.6517 47 1 6.9521 6.5835 0.5519 48 1 8.6977 6.2464 0.3182 49 1 7.9665 2.1634 -1.3054 50 1 6.4682 2.8294 -1.9979 51 1 7.3246 0.7852 -3.5307 52 1 8.3546 -1.0513 -7.5227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110491369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:28 Heat of formation + Delta-G solvation = -47.226427 kcal Electronic energy + Delta-G solvation = -31063.530622 eV Core-core repulsion = 27063.550612 eV Total energy + Delta-G solvation = -3999.980010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.44788 -39.56460 -38.03538 -36.56049 -34.40191 -34.00907 -32.05255 -31.57241 -31.10754 -29.70472 -29.03572 -27.47505 -26.59726 -24.36691 -23.97176 -22.25863 -20.81488 -20.42859 -20.12953 -19.68693 -19.18122 -18.11664 -17.27636 -16.63830 -16.28634 -15.82564 -15.48265 -15.25016 -14.90384 -14.79811 -14.63919 -14.31450 -13.99615 -13.60414 -13.38042 -13.24302 -12.90668 -12.76040 -12.50078 -12.33518 -12.30731 -12.15975 -12.07711 -11.91932 -11.70696 -11.56358 -11.50959 -11.37287 -11.23529 -11.07484 -11.02332 -10.85366 -10.76708 -10.69694 -10.60529 -10.35284 -10.00453 -9.72620 -9.58954 -9.13658 -8.68423 -8.24380 -8.18556 -6.33519 -3.84957 2.52537 2.97014 3.00247 3.02082 3.11267 3.69838 3.78880 4.06766 4.42698 4.46708 4.51395 4.61474 4.64061 4.66431 4.84558 4.95787 5.03758 5.07276 5.15170 5.20224 5.24771 5.26099 5.30615 5.38471 5.40989 5.41697 5.47304 5.48051 5.56526 5.59711 5.66547 5.74317 5.75445 5.83392 5.85655 5.87564 5.92909 5.97862 6.00883 6.12389 6.17442 6.21158 6.28575 6.38431 6.45374 6.74649 7.03778 7.32456 7.55302 8.10652 8.11883 8.57336 8.92807 9.39527 9.80406 10.79736 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007260 B = 0.004677 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3855.758692 B = 5985.821087 C = 9366.961757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.075 4.075 4 H 0.078 0.922 5 C -0.153 4.153 6 C -0.143 4.143 7 C 0.512 3.488 8 O -0.535 6.535 9 N -0.728 5.728 10 C 0.113 3.887 11 H 0.093 0.907 12 C -0.163 4.163 13 C 0.057 3.943 14 H 0.130 0.870 15 C -0.116 4.116 16 C -0.109 4.109 17 C 0.033 3.967 18 H 0.115 0.885 19 N -0.460 5.460 20 C 0.000 4.000 21 C 0.456 3.544 22 O -0.559 6.559 23 N -0.591 5.591 24 C -0.304 4.304 25 H 0.120 0.880 26 C 0.042 3.958 27 N -0.881 5.881 28 Si 0.878 3.122 29 H -0.271 1.271 30 H -0.276 1.276 31 H -0.270 1.270 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.401 0.599 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.073 0.927 51 H 0.368 0.632 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.567 3.569 19.317 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.094 4.094 4 H 0.097 0.903 5 C -0.210 4.210 6 C -0.183 4.183 7 C 0.300 3.700 8 O -0.411 6.411 9 N -0.382 5.382 10 C 0.007 3.993 11 H 0.111 0.889 12 C -0.203 4.203 13 C -0.052 4.052 14 H 0.148 0.852 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.076 4.076 18 H 0.133 0.867 19 N -0.182 5.182 20 C -0.133 4.133 21 C 0.241 3.759 22 O -0.440 6.440 23 N -0.231 5.231 24 C -0.433 4.433 25 H 0.137 0.863 26 C -0.161 4.161 27 N -0.521 5.521 28 Si 0.704 3.296 29 H -0.197 1.197 30 H -0.201 1.201 31 H -0.195 1.195 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.238 0.762 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.104 0.896 50 H 0.091 0.909 51 H 0.201 0.799 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.008 4.659 18.696 22.190 hybrid contribution -1.328 -1.896 0.517 2.372 sum -12.336 2.763 19.212 22.999 Atomic orbital electron populations 1.21802 0.95731 1.01450 1.02040 1.21604 0.96209 0.96078 1.02037 1.20905 0.92589 0.96068 0.99865 0.90345 1.21988 1.01140 1.02019 0.95853 1.21831 0.98032 0.93983 1.04406 1.20780 0.82123 0.91756 0.75379 1.90658 1.54532 1.46652 1.49291 1.46573 1.07846 1.09075 1.74731 1.22849 0.95939 0.82930 0.97535 0.88868 1.23767 0.99055 1.02166 0.95355 1.24558 0.89182 0.91510 0.99908 0.85243 1.22942 1.01883 0.96417 0.94208 1.22823 1.01947 0.92812 0.97111 1.24813 0.90226 0.98227 0.94336 0.86674 1.67650 1.48802 1.01084 1.00651 1.22578 1.00335 0.92979 0.97362 1.19545 0.85428 0.83639 0.87258 1.90553 1.42364 1.44869 1.66263 1.42189 1.50068 1.14264 1.16569 1.19422 1.31905 1.02394 0.89572 0.86273 1.25025 0.97823 0.97404 0.95843 1.69617 1.44850 1.25021 1.12622 0.86705 0.80935 0.82428 0.79528 1.19657 1.20130 1.19540 0.92687 0.92883 0.92478 0.91847 0.91985 0.92760 0.93525 0.90824 0.88706 0.88890 0.76175 0.90967 0.90422 0.90743 0.91472 0.91244 0.90512 0.89594 0.90937 0.79937 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.16 0.36 -0.81 16 2 C -0.12 -0.98 5.40 -26.74 -0.14 -1.12 16 3 C -0.08 -0.71 2.04 -90.62 -0.18 -0.90 16 4 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 5 C -0.15 -1.45 8.69 37.16 0.32 -1.13 16 6 C -0.14 -1.29 5.17 -27.88 -0.14 -1.43 16 7 C 0.51 5.98 7.51 -10.98 -0.08 5.90 16 8 O -0.53 -7.89 13.75 5.55 0.08 -7.82 16 9 N -0.73 -7.78 3.76 -51.40 -0.19 -7.97 16 10 C 0.11 1.31 2.47 -65.44 -0.16 1.15 16 11 H 0.09 1.11 7.45 -51.93 -0.39 0.72 16 12 C -0.16 -2.21 5.46 -24.25 -0.13 -2.34 16 13 C 0.06 0.85 4.21 -62.56 -0.26 0.59 16 14 H 0.13 2.37 6.90 -51.93 -0.36 2.01 16 15 C -0.12 -1.39 6.48 -23.22 -0.15 -1.54 16 16 C -0.11 -1.10 6.58 -23.23 -0.15 -1.26 16 17 C 0.03 0.37 4.59 -62.56 -0.29 0.09 16 18 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 19 N -0.46 -6.95 5.36 -207.01 -1.11 -8.06 16 20 C 0.00 0.00 4.02 -4.97 -0.02 -0.02 16 21 C 0.46 10.05 7.57 -10.98 -0.08 9.97 16 22 O -0.56 -14.62 14.38 5.54 0.08 -14.54 16 23 N -0.59 -13.70 5.09 -10.96 -0.06 -13.75 16 24 C -0.30 -8.47 10.16 -14.93 -0.15 -8.62 16 25 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 26 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 27 N -0.88 -25.52 13.96 55.50 0.77 -24.74 16 28 Si 0.88 18.93 27.74 -169.99 -4.71 14.22 16 29 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 30 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 31 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.86 5.95 -51.93 -0.31 0.55 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.40 3.71 6.48 -40.82 -0.26 3.44 16 43 H 0.07 1.12 7.03 -51.93 -0.37 0.75 16 44 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 47 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.09 1.16 8.00 -51.93 -0.42 0.75 16 50 H 0.07 1.04 3.50 -51.93 -0.18 0.86 16 51 H 0.37 7.42 5.76 -40.82 -0.24 7.19 16 52 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -33.19 392.98 -9.20 -42.39 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -8.61 Total: 14.80 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.37 Total: -0.45 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.58 Total: -54.53 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.16 Total: -22.36 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.19 -9.20 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110491369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.832 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds