Wall clock time and date at job start Tue Mar 31 2020 20:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.52997 * 109.47060 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.47233 * 175.00027 * 3 2 1 7 7 H 1.09002 * 109.47075 * 59.99068 * 6 3 2 8 8 N 1.46507 * 109.46688 * 299.99730 * 6 3 2 9 9 C 1.34775 * 119.99901 * 299.99974 * 8 6 3 10 10 C 1.50703 * 119.99773 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00300 * 359.97438 * 9 8 6 12 12 C 1.50689 * 109.47218 * 179.97438 * 6 3 2 13 13 O 1.21284 * 120.00358 * 99.99914 * 12 6 3 14 14 N 1.34780 * 120.00264 * 279.99936 * 12 6 3 15 15 C 1.46497 * 120.00090 * 180.02562 * 14 12 6 16 16 H 1.08995 * 110.56065 * 34.29729 * 15 14 12 17 17 C 1.54851 * 110.62541 * 271.39493 * 15 14 12 18 18 C 1.56227 * 103.27102 * 241.54944 * 17 15 14 19 19 H 1.09004 * 116.12413 * 159.08953 * 18 17 15 20 20 C 1.55841 * 105.00066 * 288.06369 * 18 17 15 21 21 C 1.54848 * 103.44779 * 71.88023 * 20 18 17 22 22 C 1.55846 * 103.44444 * 359.97438 * 21 20 18 23 23 H 1.08996 * 115.55635 * 159.56437 * 22 21 20 24 24 N 1.50233 * 101.05055 * 32.93798 * 22 21 20 25 25 C 1.36937 * 130.83850 * 126.01116 * 24 22 21 26 26 H 1.07995 * 119.99989 * 0.02562 * 25 24 22 27 27 C 1.38815 * 120.00025 * 180.02562 * 25 24 22 28 28 N 1.31623 * 119.99989 * 0.02562 * 27 25 24 29 29 Si 1.86797 * 120.00064 * 179.97438 * 27 25 24 30 30 H 1.48502 * 109.46784 * 60.00246 * 29 27 25 31 31 H 1.48505 * 109.47268 * 179.97438 * 29 27 25 32 32 H 1.48494 * 109.47429 * 300.00074 * 29 27 25 33 33 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 34 34 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 35 35 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 36 36 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 37 37 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 38 38 H 1.08996 * 109.47853 * 180.02562 * 5 3 2 39 39 H 1.09002 * 109.47153 * 300.00319 * 5 3 2 40 40 H 1.08998 * 109.47533 * 59.99948 * 5 3 2 41 41 H 0.97005 * 119.99489 * 119.99731 * 8 6 3 42 42 H 1.09003 * 109.46825 * 0.02562 * 10 9 8 43 43 H 1.08998 * 109.47107 * 119.99732 * 10 9 8 44 44 H 1.08993 * 109.47196 * 239.99748 * 10 9 8 45 45 H 0.96999 * 119.99507 * 359.97438 * 14 12 6 46 46 H 1.09003 * 110.62560 * 359.97438 * 17 15 14 47 47 H 1.09002 * 110.62765 * 123.02533 * 17 15 14 48 48 H 1.09010 * 110.62493 * 313.39157 * 20 18 17 49 49 H 1.08999 * 110.62583 * 190.37274 * 20 18 17 50 50 H 1.08999 * 110.62736 * 241.51037 * 21 20 18 51 51 H 1.09001 * 110.76314 * 118.55806 * 21 20 18 52 52 H 0.96993 * 120.00012 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4445 0.1257 7 1 3.9995 0.9053 -0.7160 8 7 3.9524 0.7895 1.3776 9 6 3.5277 1.2850 2.5569 10 6 3.9268 0.6116 3.8447 11 8 2.8252 2.2733 2.5818 12 6 4.0671 2.8652 0.1251 13 8 4.3556 3.4069 1.1712 14 7 4.1959 3.5340 -1.0380 15 6 4.6847 4.9150 -1.0386 16 1 5.4219 5.0604 -0.2491 17 6 3.5091 5.9098 -0.8773 18 6 3.5614 6.7439 -2.1973 19 1 2.6424 7.2595 -2.4760 20 6 4.8226 7.6479 -2.0534 21 6 5.9987 6.6530 -2.2103 22 6 5.2879 5.2831 -2.4270 23 1 5.8936 4.5082 -2.8968 24 7 4.0555 5.7126 -3.1711 25 6 3.5412 5.2935 -4.3690 26 1 4.0486 4.5272 -4.9361 27 6 2.3676 5.8538 -4.8545 28 7 1.7494 6.7881 -4.1636 29 14 1.6663 5.2827 -6.4889 30 1 1.3680 3.8296 -6.4189 31 1 0.4168 6.0305 -6.7799 32 1 2.6562 5.5334 -7.5670 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 0.0005 36 1 1.8934 -0.5138 -0.8899 37 1 1.8934 -0.5138 0.8900 38 1 1.9989 3.1540 -1.3077 39 1 2.0699 1.5874 -2.1492 40 1 0.5490 2.1252 -1.3971 41 1 4.5145 -0.0008 1.3577 42 1 4.5544 -0.2518 3.6238 43 1 4.4822 1.3147 4.4654 44 1 3.0330 0.2852 4.3762 45 1 3.9655 3.1006 -1.8746 46 1 2.5623 5.3757 -0.7973 47 1 3.6646 6.5506 -0.0094 48 1 4.8470 8.1194 -1.0708 49 1 4.8480 8.3999 -2.8420 50 1 6.6064 6.6310 -1.3057 51 1 6.6096 6.9102 -3.0756 52 1 0.9292 7.1793 -4.5027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111438753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:40 Heat of formation + Delta-G solvation = -34.679868 kcal Electronic energy + Delta-G solvation = -32087.392771 eV Core-core repulsion = 28087.956821 eV Total energy + Delta-G solvation = -3999.435950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.56023 -39.24839 -37.89631 -36.39739 -33.93587 -33.49939 -32.50453 -30.80079 -29.37577 -29.08306 -28.74716 -27.72473 -26.10642 -24.30657 -23.92367 -21.57757 -21.03193 -19.99192 -19.76848 -19.25077 -18.54616 -17.42826 -16.98545 -16.56361 -16.01340 -15.42222 -15.28419 -14.80435 -14.66516 -14.35892 -13.95329 -13.91942 -13.52164 -13.47250 -13.35774 -12.86265 -12.74060 -12.42163 -12.38038 -12.07176 -11.96293 -11.86336 -11.73393 -11.52575 -11.24110 -11.08525 -10.93467 -10.91566 -10.84089 -10.62543 -10.59044 -10.42343 -10.32005 -10.11154 -9.91321 -9.80872 -9.40591 -9.32276 -9.15910 -8.94258 -8.60816 -8.28632 -6.92745 -5.72625 -3.11852 2.82451 3.06945 3.23814 3.36187 3.40896 3.42844 3.82535 4.41453 4.71036 4.87730 4.89167 5.00560 5.08617 5.15847 5.16635 5.28175 5.36278 5.38893 5.49734 5.61437 5.68487 5.69887 5.73376 5.75723 5.77264 5.90711 5.97402 6.07064 6.10134 6.12232 6.17422 6.18741 6.23123 6.35906 6.40101 6.47228 6.52722 6.56286 6.63694 6.66206 6.80434 6.89341 7.01853 7.20825 7.39549 7.48363 7.57054 7.82076 8.11136 8.19855 8.44973 8.80200 9.08668 9.72029 10.53872 11.36047 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.004226 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.945246 B = 6623.729628 C = 8220.349904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.101 4.101 4 H 0.097 0.903 5 C -0.160 4.160 6 C 0.137 3.863 7 H 0.101 0.899 8 N -0.722 5.722 9 C 0.512 3.488 10 C -0.168 4.168 11 O -0.510 6.510 12 C 0.500 3.500 13 O -0.524 6.524 14 N -0.707 5.707 15 C 0.132 3.868 16 H 0.075 0.925 17 C -0.141 4.141 18 C 0.155 3.845 19 H 0.153 0.847 20 C -0.139 4.139 21 C -0.128 4.128 22 C 0.126 3.874 23 H 0.086 0.914 24 N -0.589 5.589 25 C -0.215 4.215 26 H 0.077 0.923 27 C -0.008 4.008 28 N -0.918 5.918 29 Si 0.913 3.087 30 H -0.286 1.286 31 H -0.291 1.291 32 H -0.287 1.287 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.399 0.601 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.401 0.599 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.050 0.950 51 H 0.056 0.944 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -14.506 9.573 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.121 4.121 4 H 0.115 0.885 5 C -0.218 4.218 6 C 0.028 3.972 7 H 0.119 0.881 8 N -0.375 5.375 9 C 0.299 3.701 10 C -0.228 4.228 11 O -0.383 6.383 12 C 0.284 3.716 13 O -0.399 6.399 14 N -0.359 5.359 15 C 0.025 3.975 16 H 0.093 0.907 17 C -0.181 4.181 18 C 0.048 3.952 19 H 0.169 0.831 20 C -0.179 4.179 21 C -0.168 4.168 22 C 0.017 3.983 23 H 0.104 0.896 24 N -0.310 5.310 25 C -0.342 4.342 26 H 0.094 0.906 27 C -0.204 4.204 28 N -0.566 5.566 29 Si 0.744 3.256 30 H -0.213 1.213 31 H -0.217 1.217 32 H -0.214 1.214 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.236 0.764 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.075 0.925 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.815 -13.366 10.117 17.191 hybrid contribution -0.054 -0.891 -1.310 1.585 sum 3.761 -14.257 8.806 17.174 Atomic orbital electron populations 1.21801 0.95754 1.01145 1.02291 1.21488 0.96111 0.95797 1.01448 1.21493 0.92366 0.97305 1.00951 0.88517 1.22065 1.02257 1.02124 0.95326 1.20948 0.96685 0.92285 0.87282 0.88071 1.45739 1.54650 1.31886 1.05260 1.20572 0.80254 0.84177 0.85103 1.21813 1.03495 1.01602 0.95845 1.90742 1.36371 1.24225 1.86944 1.20653 0.78465 0.88221 0.84311 1.90699 1.48936 1.69190 1.31059 1.46130 1.66409 1.14949 1.08428 1.22547 0.96245 0.80069 0.98595 0.90746 1.23490 0.97449 0.98080 0.99094 1.23817 0.97403 0.88714 0.85258 0.83059 1.23067 0.97677 0.98017 0.99097 1.22877 0.97325 0.97087 0.99500 1.23125 0.89958 0.94922 0.90292 0.89609 1.46483 1.22519 1.42424 1.19558 1.18924 1.04445 1.16808 0.94071 0.90562 1.24676 0.97887 0.99043 0.98780 1.69454 1.19453 1.29510 1.38142 0.86182 0.78297 0.77822 0.83329 1.21287 1.21651 1.21369 0.92835 0.92168 0.93108 0.92158 0.92291 0.90535 0.92594 0.91915 0.76655 0.91102 0.88994 0.89239 0.76421 0.92211 0.93048 0.93393 0.92698 0.93145 0.92544 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 37.16 0.36 -1.25 16 2 C -0.11 -1.17 5.32 -26.73 -0.14 -1.31 16 3 C -0.10 -1.36 1.75 -90.62 -0.16 -1.52 16 4 H 0.10 1.64 6.17 -51.93 -0.32 1.32 16 5 C -0.16 -2.33 7.97 37.16 0.30 -2.04 16 6 C 0.14 1.77 2.61 -69.08 -0.18 1.59 16 7 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 8 N -0.72 -7.92 4.35 -54.93 -0.24 -8.16 16 9 C 0.51 6.87 6.71 -10.98 -0.07 6.80 16 10 C -0.17 -1.45 10.39 36.01 0.37 -1.08 16 11 O -0.51 -9.55 12.99 -17.93 -0.23 -9.78 16 12 C 0.50 8.60 6.30 -10.99 -0.07 8.53 16 13 O -0.52 -11.00 13.37 -17.93 -0.24 -11.24 16 14 N -0.71 -12.20 3.77 -51.44 -0.19 -12.40 16 15 C 0.13 2.52 2.75 -65.47 -0.18 2.34 16 16 H 0.07 1.46 7.29 -51.93 -0.38 1.08 16 17 C -0.14 -2.99 6.25 -24.02 -0.15 -3.14 16 18 C 0.15 3.56 4.73 -62.61 -0.30 3.26 16 19 H 0.15 4.00 5.52 -51.93 -0.29 3.72 16 20 C -0.14 -2.81 6.44 -24.24 -0.16 -2.97 16 21 C -0.13 -2.36 6.44 -24.24 -0.16 -2.51 16 22 C 0.13 2.44 5.05 -62.84 -0.32 2.13 16 23 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 24 N -0.59 -13.80 2.98 -145.66 -0.43 -14.23 16 25 C -0.21 -5.50 10.59 -15.06 -0.16 -5.66 16 26 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 27 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 28 N -0.92 -25.56 10.46 55.49 0.58 -24.98 16 29 Si 0.91 21.17 29.55 -169.99 -5.02 16.14 16 30 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 31 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 32 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 38 H 0.08 1.37 5.74 -51.93 -0.30 1.07 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.90 6.56 -51.93 -0.34 0.56 16 41 H 0.40 2.82 8.67 -40.82 -0.35 2.47 16 42 H 0.07 0.39 7.91 -51.93 -0.41 -0.02 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.40 6.63 7.50 -40.82 -0.31 6.32 16 46 H 0.06 1.39 7.78 -51.93 -0.40 0.98 16 47 H 0.05 1.06 7.82 -51.93 -0.41 0.65 16 48 H 0.05 0.88 7.82 -51.92 -0.41 0.48 16 49 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -32.85 395.43 -9.75 -42.60 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -8.82 Total: 13.23 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.11 Total: 2.85 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.29 Total: -59.77 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.47 Total: -21.02 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.85 -9.75 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111438753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.918 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds