Wall clock time and date at job start Tue Mar 31 2020 20:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47117 * 2 1 4 4 H 1.08998 * 109.46796 * 304.99462 * 3 2 1 5 5 C 1.52993 * 109.47102 * 64.99834 * 3 2 1 6 6 C 1.50703 * 109.47051 * 185.00183 * 3 2 1 7 7 O 1.21281 * 120.00118 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99996 * 180.02562 * 6 3 2 9 9 C 1.46494 * 120.00319 * 179.97438 * 8 6 3 10 10 C 1.54164 * 111.79672 * 299.22649 * 9 8 6 11 11 C 1.54847 * 104.32387 * 261.29460 * 10 9 8 12 12 C 1.54845 * 102.73194 * 321.81343 * 11 10 9 13 13 C 1.54170 * 104.32412 * 38.18400 * 12 11 10 14 14 H 1.09000 * 111.79340 * 98.70257 * 13 12 11 15 15 C 1.54320 * 109.64704 * 223.30869 * 13 12 11 16 16 N 1.48534 * 104.67038 * 137.84259 * 15 13 12 17 17 C 1.46898 * 110.99861 * 200.80978 * 16 15 13 18 18 C 1.50697 * 109.47251 * 176.49313 * 17 16 15 19 19 O 1.21297 * 120.00184 * 6.06046 * 18 17 16 20 20 N 1.34773 * 120.00331 * 186.05940 * 18 17 16 21 21 C 1.37106 * 120.00339 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99641 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99981 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00112 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99820 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47156 * 60.00076 * 25 23 21 27 27 H 1.48498 * 109.47308 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47109 * 300.00336 * 25 23 21 29 29 C 1.48533 * 104.20731 * 320.35400 * 16 15 13 30 30 H 1.08999 * 109.46917 * 60.00596 * 1 2 3 31 31 H 1.08999 * 109.46637 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47437 * 300.00414 * 1 2 3 33 33 H 1.08997 * 109.47258 * 240.00098 * 2 1 3 34 34 H 1.08998 * 109.47347 * 119.99723 * 2 1 3 35 35 H 1.08998 * 109.47202 * 299.99631 * 5 3 2 36 36 H 1.08998 * 109.47129 * 60.00370 * 5 3 2 37 37 H 1.09007 * 109.46819 * 179.97438 * 5 3 2 38 38 H 0.96998 * 119.99887 * 359.97438 * 8 6 3 39 39 H 1.09005 * 110.45826 * 19.99900 * 10 9 8 40 40 H 1.08999 * 110.46487 * 142.58124 * 10 9 8 41 41 H 1.08995 * 110.76377 * 203.50009 * 11 10 9 42 42 H 1.09006 * 110.75881 * 80.12051 * 11 10 9 43 43 H 1.09001 * 110.46118 * 279.47061 * 12 11 10 44 44 H 1.08998 * 110.46468 * 156.89346 * 12 11 10 45 45 H 1.08995 * 110.39737 * 256.63609 * 15 13 12 46 46 H 1.09003 * 110.39915 * 18.92677 * 15 13 12 47 47 H 1.09008 * 109.46935 * 296.48639 * 17 16 15 48 48 H 1.08994 * 109.47530 * 56.49181 * 17 16 15 49 49 H 0.97003 * 119.99994 * 359.97438 * 20 18 17 50 50 H 0.97002 * 119.99963 * 179.97438 * 24 23 21 51 51 H 1.08999 * 110.39992 * 280.84220 * 29 16 15 52 52 H 1.09006 * 110.39283 * 158.44522 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.1451 0.3952 -0.2038 8 7 4.2150 2.6118 -0.1448 9 6 5.6750 2.6136 -0.2647 10 6 6.3469 1.8791 0.9125 11 6 6.7788 3.0127 1.8749 12 6 7.2486 4.1240 0.9044 13 6 6.2524 4.0510 -0.2700 14 1 5.4690 4.8039 -0.1835 15 6 7.0157 4.1680 -1.6060 16 7 6.3840 3.1554 -2.4902 17 6 7.2783 2.7921 -3.5974 18 6 6.6408 1.7033 -4.4216 19 8 5.5053 1.3490 -4.1842 20 7 7.3323 1.1233 -5.4224 21 6 6.7525 0.1323 -6.1719 22 1 5.7418 -0.1837 -5.9599 23 6 7.4653 -0.4653 -7.2041 24 7 8.6953 -0.0811 -7.4617 25 14 6.6755 -1.8158 -8.2247 26 1 5.4578 -1.2862 -8.8893 27 1 7.6375 -2.2851 -9.2541 28 1 6.3037 -2.9503 -7.3417 29 6 6.1419 1.9927 -1.5981 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5489 2.1253 1.3968 36 1 2.0698 1.5876 2.1491 37 1 1.9990 3.1541 1.3074 38 1 3.7326 3.4509 -0.0806 39 1 5.6358 1.2138 1.4022 40 1 7.2168 1.3208 0.5667 41 1 7.5991 2.6856 2.5138 42 1 5.9341 3.3542 2.4734 43 1 8.2622 3.9233 0.5573 44 1 7.1966 5.0994 1.3880 45 1 6.8957 5.1666 -2.0259 46 1 8.0722 3.9421 -1.4610 47 1 7.4542 3.6664 -4.2243 48 1 8.2271 2.4358 -3.1963 49 1 8.2403 1.4068 -5.6126 50 1 9.1930 -0.4985 -8.1821 51 1 7.0625 1.4276 -1.4523 52 1 5.3633 1.3519 -2.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111591816.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:02 Heat of formation + Delta-G solvation = -80.502697 kcal Electronic energy + Delta-G solvation = -31073.134492 eV Core-core repulsion = 27071.711515 eV Total energy + Delta-G solvation = -4001.422977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83779 -39.04322 -37.97469 -35.44137 -35.18076 -33.77212 -33.64949 -31.20233 -30.34143 -30.03845 -28.84506 -26.23233 -25.59039 -25.28306 -24.12056 -22.45222 -21.09301 -20.80874 -19.47301 -19.22094 -18.94208 -17.76211 -17.26204 -16.35835 -15.78186 -15.63214 -15.32436 -15.25953 -14.72349 -14.51339 -14.25819 -13.95973 -13.87125 -13.75319 -13.55517 -13.26188 -12.86142 -12.69510 -12.47040 -12.29145 -12.12722 -11.92751 -11.75434 -11.66260 -11.57604 -11.48130 -11.21971 -11.14722 -11.08659 -10.95543 -10.87710 -10.77178 -10.74124 -10.69544 -10.58961 -10.39354 -10.15987 -9.44345 -9.38645 -8.80592 -8.38903 -7.97463 -7.86900 -6.36395 -3.76795 2.87338 3.24335 3.26283 3.29160 3.34288 3.96747 4.07529 4.21223 4.29145 4.51877 4.65047 4.69873 4.75613 4.85612 5.07377 5.16489 5.16671 5.22791 5.25973 5.29400 5.29956 5.32620 5.38672 5.46559 5.48641 5.56286 5.68870 5.72469 5.73772 5.77312 5.80177 5.80649 5.82317 5.88477 5.92068 6.00296 6.05665 6.13943 6.17078 6.19341 6.21266 6.33175 6.34132 6.60197 6.84374 7.21052 7.29431 7.60433 7.68171 8.11781 8.45892 8.67824 9.23859 9.60041 10.12578 10.81512 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003567 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.149035 B = 7847.491908 C =10071.686717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.142 4.142 6 C 0.519 3.481 7 O -0.529 6.529 8 N -0.708 5.708 9 C 0.174 3.826 10 C -0.122 4.122 11 C -0.123 4.123 12 C -0.118 4.118 13 C -0.094 4.094 14 H 0.089 0.911 15 C 0.033 3.967 16 N -0.486 5.486 17 C 0.034 3.966 18 C 0.443 3.557 19 O -0.575 6.575 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.039 3.961 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.396 0.604 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.042 0.958 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.008 10.205 19.731 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.200 4.200 6 C 0.305 3.695 7 O -0.404 6.404 8 N -0.360 5.360 9 C 0.087 3.913 10 C -0.161 4.161 11 C -0.161 4.161 12 C -0.156 4.156 13 C -0.113 4.113 14 H 0.107 0.893 15 C -0.095 4.095 16 N -0.209 5.209 17 C -0.098 4.098 18 C 0.228 3.772 19 O -0.458 6.458 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.090 4.090 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.231 0.769 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.065 0.935 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.061 0.939 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.688 9.312 19.401 22.852 hybrid contribution 0.917 -0.297 -0.553 1.111 sum -6.772 9.015 18.848 21.963 Atomic orbital electron populations 1.21837 0.95720 1.01779 1.01656 1.21331 0.95106 0.94288 1.03653 1.21350 0.92295 0.99437 1.00226 0.88512 1.21807 1.02131 0.99993 0.96066 1.20557 0.89693 0.83670 0.75571 1.90722 1.70057 1.31367 1.48274 1.45840 1.06386 1.08534 1.75205 1.21465 0.79888 0.94725 0.95202 1.22688 1.00598 0.97419 0.95388 1.22529 1.00569 0.95613 0.97374 1.22474 0.98667 0.99020 0.95407 1.22686 0.97848 0.95856 0.94944 0.89312 1.23303 0.96272 0.97855 0.92101 1.65243 1.39878 1.08748 1.07074 1.22073 0.94140 0.99228 0.94322 1.19708 0.87656 0.85802 0.84008 1.90515 1.18700 1.65876 1.70711 1.41845 1.15645 1.33846 1.28853 1.19649 1.00319 1.12164 1.10507 0.88029 1.25237 0.95635 0.99124 0.97925 1.69607 1.09839 1.43240 1.31856 0.85933 0.78552 0.80723 0.79118 1.19912 1.20994 1.19911 1.23578 1.01739 0.93210 0.90445 0.92650 0.92578 0.92715 0.90749 0.91535 0.91387 0.92262 0.92409 0.76912 0.90565 0.90768 0.91491 0.91637 0.91092 0.91361 0.90154 0.93582 0.89156 0.93476 0.77557 0.91898 0.93947 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.67 37.16 0.36 -1.02 16 2 C -0.11 -1.23 4.75 -26.73 -0.13 -1.36 16 3 C -0.11 -1.22 2.72 -91.77 -0.25 -1.47 16 4 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 5 C -0.14 -1.11 8.84 37.15 0.33 -0.79 16 6 C 0.52 7.49 6.19 -10.98 -0.07 7.43 16 7 O -0.53 -9.88 13.44 5.56 0.07 -9.81 16 8 N -0.71 -8.89 5.14 -45.49 -0.23 -9.13 16 9 C 0.17 2.36 0.90 -129.52 -0.12 2.25 16 10 C -0.12 -1.55 5.64 -25.15 -0.14 -1.69 16 11 C -0.12 -1.15 6.90 -24.79 -0.17 -1.32 16 12 C -0.12 -1.05 6.38 -25.15 -0.16 -1.21 16 13 C -0.09 -1.02 3.65 -88.32 -0.32 -1.34 16 14 H 0.09 0.84 7.72 -51.93 -0.40 0.43 16 15 C 0.03 0.42 6.04 -2.23 -0.01 0.41 16 16 N -0.49 -8.45 5.18 -231.53 -1.20 -9.65 16 17 C 0.03 0.64 5.39 -4.98 -0.03 0.62 16 18 C 0.44 10.96 7.43 -10.99 -0.08 10.88 16 19 O -0.57 -16.22 14.00 5.54 0.08 -16.15 16 20 N -0.56 -14.87 5.29 -10.96 -0.06 -14.93 16 21 C -0.30 -8.56 9.68 -14.93 -0.14 -8.71 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -25.21 13.05 55.50 0.72 -24.49 16 25 Si 0.93 21.73 29.55 -169.99 -5.02 16.71 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 29 C 0.04 0.70 4.44 -2.23 -0.01 0.69 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 33 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.45 6.57 -51.93 -0.34 0.10 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.38 7.56 -51.93 -0.39 -0.02 16 38 H 0.40 3.86 7.72 -40.82 -0.32 3.55 16 39 H 0.08 1.07 6.66 -51.93 -0.35 0.73 16 40 H 0.07 1.01 7.25 -51.93 -0.38 0.64 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.64 7.25 -51.93 -0.38 0.27 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.55 7.04 -51.93 -0.37 0.19 16 47 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 48 H 0.05 0.82 7.98 -51.93 -0.41 0.41 16 49 H 0.39 9.84 7.90 -40.82 -0.32 9.51 16 50 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 51 H 0.04 0.81 7.07 -51.93 -0.37 0.44 16 52 H 0.11 2.65 5.17 -51.93 -0.27 2.39 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -34.08 398.41 -9.46 -43.54 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -8.78 Total: 14.02 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.04 Total: 3.87 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.77 Total: -58.20 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.15 Total: -25.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.08 -9.46 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111591816.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.963 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds