Wall clock time and date at job start Tue Mar 31 2020 20:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47117 * 2 1 4 4 H 1.08998 * 109.46796 * 304.99462 * 3 2 1 5 5 C 1.52993 * 109.47102 * 64.99834 * 3 2 1 6 6 C 1.50703 * 109.47051 * 185.00183 * 3 2 1 7 7 O 1.21281 * 120.00118 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99996 * 180.02562 * 6 3 2 9 9 C 1.46494 * 120.00319 * 179.97438 * 8 6 3 10 10 C 1.54164 * 111.79672 * 299.22649 * 9 8 6 11 11 C 1.54847 * 104.32387 * 261.29460 * 10 9 8 12 12 C 1.54845 * 102.73194 * 321.81343 * 11 10 9 13 13 C 1.54170 * 104.32412 * 38.18400 * 12 11 10 14 14 H 1.09000 * 111.79340 * 98.70257 * 13 12 11 15 15 C 1.54320 * 109.64704 * 223.30869 * 13 12 11 16 16 N 1.48534 * 104.67038 * 137.84259 * 15 13 12 17 17 C 1.46898 * 110.99861 * 200.80978 * 16 15 13 18 18 C 1.50697 * 109.47251 * 176.49313 * 17 16 15 19 19 O 1.21297 * 120.00184 * 6.06046 * 18 17 16 20 20 N 1.34773 * 120.00331 * 186.05940 * 18 17 16 21 21 C 1.37106 * 120.00339 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99641 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99981 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00112 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99820 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47156 * 60.00076 * 25 23 21 27 27 H 1.48498 * 109.47308 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47109 * 300.00336 * 25 23 21 29 29 C 1.48533 * 104.20731 * 320.35400 * 16 15 13 30 30 H 1.08999 * 109.46917 * 60.00596 * 1 2 3 31 31 H 1.08999 * 109.46637 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47437 * 300.00414 * 1 2 3 33 33 H 1.08997 * 109.47258 * 240.00098 * 2 1 3 34 34 H 1.08998 * 109.47347 * 119.99723 * 2 1 3 35 35 H 1.08998 * 109.47202 * 299.99631 * 5 3 2 36 36 H 1.08998 * 109.47129 * 60.00370 * 5 3 2 37 37 H 1.09007 * 109.46819 * 179.97438 * 5 3 2 38 38 H 0.96998 * 119.99887 * 359.97438 * 8 6 3 39 39 H 1.09005 * 110.45826 * 19.99900 * 10 9 8 40 40 H 1.08999 * 110.46487 * 142.58124 * 10 9 8 41 41 H 1.08995 * 110.76377 * 203.50009 * 11 10 9 42 42 H 1.09006 * 110.75881 * 80.12051 * 11 10 9 43 43 H 1.09001 * 110.46118 * 279.47061 * 12 11 10 44 44 H 1.08998 * 110.46468 * 156.89346 * 12 11 10 45 45 H 1.08995 * 110.39737 * 256.63609 * 15 13 12 46 46 H 1.09003 * 110.39915 * 18.92677 * 15 13 12 47 47 H 1.09008 * 109.46935 * 296.48639 * 17 16 15 48 48 H 1.08994 * 109.47530 * 56.49181 * 17 16 15 49 49 H 0.97003 * 119.99994 * 359.97438 * 20 18 17 50 50 H 0.97002 * 119.99963 * 179.97438 * 24 23 21 51 51 H 1.08999 * 110.39992 * 280.84220 * 29 16 15 52 52 H 1.09006 * 110.39283 * 158.44522 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.1451 0.3952 -0.2038 8 7 4.2150 2.6118 -0.1448 9 6 5.6750 2.6136 -0.2647 10 6 6.3469 1.8791 0.9125 11 6 6.7788 3.0127 1.8749 12 6 7.2486 4.1240 0.9044 13 6 6.2524 4.0510 -0.2700 14 1 5.4690 4.8039 -0.1835 15 6 7.0157 4.1680 -1.6060 16 7 6.3840 3.1554 -2.4902 17 6 7.2783 2.7921 -3.5974 18 6 6.6408 1.7033 -4.4216 19 8 5.5053 1.3490 -4.1842 20 7 7.3323 1.1233 -5.4224 21 6 6.7525 0.1323 -6.1719 22 1 5.7418 -0.1837 -5.9599 23 6 7.4653 -0.4653 -7.2041 24 7 8.6953 -0.0811 -7.4617 25 14 6.6755 -1.8158 -8.2247 26 1 5.4578 -1.2862 -8.8893 27 1 7.6375 -2.2851 -9.2541 28 1 6.3037 -2.9503 -7.3417 29 6 6.1419 1.9927 -1.5981 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5489 2.1253 1.3968 36 1 2.0698 1.5876 2.1491 37 1 1.9990 3.1541 1.3074 38 1 3.7326 3.4509 -0.0806 39 1 5.6358 1.2138 1.4022 40 1 7.2168 1.3208 0.5667 41 1 7.5991 2.6856 2.5138 42 1 5.9341 3.3542 2.4734 43 1 8.2622 3.9233 0.5573 44 1 7.1966 5.0994 1.3880 45 1 6.8957 5.1666 -2.0259 46 1 8.0722 3.9421 -1.4610 47 1 7.4542 3.6664 -4.2243 48 1 8.2271 2.4358 -3.1963 49 1 8.2403 1.4068 -5.6126 50 1 9.1930 -0.4985 -8.1821 51 1 7.0625 1.4276 -1.4523 52 1 5.3633 1.3519 -2.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111591816.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:00 Heat of formation + Delta-G solvation = -106.509975 kcal Electronic energy + Delta-G solvation = -31074.262252 eV Core-core repulsion = 27071.711515 eV Total energy + Delta-G solvation = -4002.550737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96588 -40.41011 -39.66505 -36.66011 -36.30859 -35.80800 -34.72252 -33.33321 -31.35741 -31.10934 -29.94689 -27.79497 -26.65513 -26.27261 -25.76803 -23.55484 -22.18043 -21.84783 -20.93008 -20.36791 -20.32521 -19.84934 -18.37093 -17.67755 -17.32124 -16.84587 -16.62374 -16.40196 -16.31331 -15.93982 -15.60185 -15.36612 -15.32547 -14.92014 -14.76091 -14.40229 -14.07436 -13.98176 -13.60378 -13.56692 -13.38747 -13.13720 -13.00229 -12.97725 -12.71023 -12.59265 -12.49822 -12.49006 -12.41645 -12.24146 -12.16703 -12.00221 -11.78656 -11.71737 -11.62094 -11.60220 -11.50362 -11.49466 -10.58408 -10.32430 -10.06124 -9.95032 -9.40202 -8.50846 -5.99769 1.35160 1.36439 1.47931 1.73946 2.00489 2.23759 2.25042 2.80416 3.14124 3.19111 3.41319 3.51427 3.73061 3.83407 3.86929 3.99752 4.14065 4.20477 4.24920 4.30834 4.36261 4.40645 4.43152 4.47611 4.50711 4.53599 4.59821 4.65483 4.73969 4.75099 4.80232 4.93471 4.96532 4.98648 5.03349 5.09086 5.09901 5.14294 5.20329 5.23585 5.25630 5.35669 5.36609 5.45370 5.47923 5.67489 5.79010 5.90090 6.06039 6.56239 6.65935 7.08560 7.38832 7.50876 8.08160 8.66621 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003567 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.149035 B = 7847.491908 C =10071.686717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.107 4.107 4 H 0.103 0.897 5 C -0.134 4.134 6 C 0.508 3.492 7 O -0.583 6.583 8 N -0.697 5.697 9 C 0.174 3.826 10 C -0.123 4.123 11 C -0.112 4.112 12 C -0.109 4.109 13 C -0.084 4.084 14 H 0.115 0.885 15 C 0.031 3.969 16 N -0.502 5.502 17 C 0.046 3.954 18 C 0.436 3.564 19 O -0.616 6.616 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.265 1.265 28 H -0.276 1.276 29 C 0.043 3.957 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.413 0.587 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.057 0.943 47 H 0.117 0.883 48 H 0.063 0.937 49 H 0.396 0.604 50 H 0.279 0.721 51 H 0.020 0.980 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 13.208 21.317 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.128 4.128 4 H 0.121 0.879 5 C -0.191 4.191 6 C 0.296 3.704 7 O -0.462 6.462 8 N -0.348 5.348 9 C 0.087 3.913 10 C -0.162 4.162 11 C -0.149 4.149 12 C -0.147 4.147 13 C -0.103 4.103 14 H 0.133 0.867 15 C -0.096 4.096 16 N -0.226 5.226 17 C -0.086 4.086 18 C 0.224 3.776 19 O -0.502 6.502 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.091 0.909 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.189 1.189 28 H -0.201 1.201 29 C -0.086 4.086 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.251 0.749 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.075 0.925 47 H 0.135 0.865 48 H 0.081 0.919 49 H 0.230 0.770 50 H 0.088 0.912 51 H 0.038 0.962 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.834 12.380 20.997 25.603 hybrid contribution 0.984 -1.272 -1.073 1.934 sum -6.850 11.108 19.924 23.817 Atomic orbital electron populations 1.21794 0.93149 1.02372 1.02921 1.21304 0.97266 0.94589 1.01293 1.21392 0.89528 0.99318 1.02604 0.87852 1.21793 1.03455 1.00464 0.93415 1.21310 0.91274 0.83347 0.74442 1.90697 1.71421 1.33385 1.50692 1.45755 1.06207 1.08839 1.74032 1.21474 0.80514 0.96651 0.92689 1.22630 0.99236 0.98368 0.95934 1.22496 1.01530 0.94067 0.96851 1.22468 0.97782 1.00262 0.94168 1.22755 0.98697 0.93951 0.94875 0.86697 1.23500 0.96864 0.97120 0.92099 1.65196 1.40741 1.09099 1.07529 1.21967 0.94245 0.97811 0.94555 1.20818 0.87182 0.86186 0.83440 1.90498 1.20790 1.67302 1.71584 1.41905 1.15889 1.33909 1.29379 1.19580 0.99935 1.14412 1.12563 0.90852 1.26021 0.96089 1.00754 0.98206 1.69660 1.10430 1.43796 1.32134 0.85017 0.78116 0.77653 0.77710 1.19530 1.18915 1.20122 1.23339 0.98995 0.93222 0.93050 0.92398 0.92443 0.90275 0.94827 0.92319 0.89301 0.92704 0.90393 0.74920 0.92667 0.92839 0.90330 0.90059 0.91121 0.88134 0.87822 0.92503 0.86491 0.91890 0.77027 0.91174 0.96158 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.67 71.98 0.70 -1.84 16 2 C -0.11 -2.64 4.75 30.60 0.15 -2.50 16 3 C -0.11 -2.37 2.72 -11.54 -0.03 -2.41 16 4 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 5 C -0.13 -1.80 8.84 71.98 0.64 -1.17 16 6 C 0.51 15.51 6.19 87.66 0.54 16.06 16 7 O -0.58 -24.03 13.44 -3.03 -0.04 -24.07 16 8 N -0.70 -17.39 5.14 -416.22 -2.14 -19.52 16 9 C 0.17 4.71 0.90 5.09 0.00 4.71 16 10 C -0.12 -3.17 5.64 31.62 0.18 -2.99 16 11 C -0.11 -1.78 6.90 31.85 0.22 -1.56 16 12 C -0.11 -1.48 6.38 31.62 0.20 -1.28 16 13 C -0.08 -1.55 3.65 -9.30 -0.03 -1.58 16 14 H 0.11 1.59 7.72 -2.39 -0.02 1.57 16 15 C 0.03 0.71 6.04 86.43 0.52 1.23 16 16 N -0.50 -17.40 5.18 -886.44 -4.59 -21.99 16 17 C 0.05 1.73 5.39 85.56 0.46 2.19 16 18 C 0.44 22.63 7.43 87.66 0.65 23.29 16 19 O -0.62 -37.19 14.00 -3.08 -0.04 -37.23 16 20 N -0.57 -31.50 5.29 -306.99 -1.62 -33.12 16 21 C -0.34 -20.25 9.68 84.04 0.81 -19.44 16 22 H 0.07 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -51.51 13.05 21.66 0.28 -51.22 16 25 Si 0.99 45.13 29.55 68.60 2.03 47.16 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 27 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 29 C 0.04 1.66 4.44 86.44 0.38 2.04 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.01 6.56 -2.39 -0.02 0.99 16 33 H 0.03 1.08 7.96 -2.39 -0.02 1.06 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.09 0.86 6.57 -2.39 -0.02 0.85 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.75 7.56 -2.38 -0.02 0.73 16 38 H 0.41 7.22 7.72 -92.71 -0.72 6.51 16 39 H 0.05 1.64 6.66 -2.38 -0.02 1.63 16 40 H 0.05 1.56 7.25 -2.39 -0.02 1.55 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.07 1.01 7.25 -2.39 -0.02 0.99 16 44 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.06 1.19 7.04 -2.39 -0.02 1.18 16 47 H 0.12 3.80 8.14 -2.38 -0.02 3.79 16 48 H 0.06 2.18 7.98 -2.39 -0.02 2.16 16 49 H 0.40 20.52 7.90 -92.71 -0.73 19.79 16 50 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 51 H 0.02 0.84 7.07 -2.39 -0.02 0.82 16 52 H 0.06 2.88 5.17 -2.38 -0.01 2.87 16 Total: -1.00 -82.09 398.41 -0.79 -82.88 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: -0.52 Total: 42.50 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 5.86 Total: 14.63 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -8.07 Total: -125.86 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: -0.08 Total: -61.30 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -82.09 -0.79 -82.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111591816.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.631 kcal (2) G-P(sol) polarization free energy of solvation -82.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds