Wall clock time and date at job start Tue Mar 31 2020 19:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47421 * 2 1 4 4 C 1.50704 * 109.46964 * 120.00058 * 2 1 3 5 5 O 1.21286 * 119.99925 * 330.39320 * 4 2 1 6 6 N 1.34773 * 120.00053 * 150.40204 * 4 2 1 7 7 C 1.46499 * 120.00038 * 183.52891 * 6 4 2 8 8 C 1.46504 * 120.00184 * 3.52644 * 6 4 2 9 9 C 1.50694 * 109.46944 * 93.06123 * 8 6 4 10 10 O 1.21278 * 120.00533 * 0.02562 * 9 8 6 11 11 N 1.34782 * 119.99768 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99897 * 180.02562 * 11 9 8 13 13 C 1.54319 * 112.36140 * 299.33418 * 12 11 9 14 14 C 1.55053 * 103.94146 * 262.39279 * 13 12 11 15 15 C 1.55050 * 102.10741 * 319.94629 * 14 13 12 16 16 C 1.54315 * 103.94063 * 40.05389 * 15 14 13 17 17 H 1.09005 * 111.69150 * 97.20649 * 16 15 14 18 18 C 1.53774 * 109.06368 * 221.16543 * 16 15 14 19 19 N 1.47217 * 106.38124 * 94.89055 * 18 16 15 20 20 C 1.36933 * 126.70423 * 211.27723 * 19 18 16 21 21 H 1.08004 * 119.99783 * 179.97438 * 20 19 18 22 22 C 1.38805 * 120.00026 * 359.97438 * 20 19 18 23 23 N 1.31621 * 120.00368 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99965 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47073 * 59.99986 * 24 22 20 26 26 H 1.48501 * 109.47174 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47340 * 300.00283 * 24 22 20 28 28 C 1.47212 * 106.59112 * 31.28253 * 19 18 16 29 29 H 1.09007 * 109.47110 * 299.99986 * 1 2 3 30 30 H 1.09000 * 109.47281 * 60.00280 * 1 2 3 31 31 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47201 * 239.99555 * 2 1 3 33 33 H 1.08994 * 109.47378 * 174.31991 * 3 2 1 34 34 H 1.08999 * 109.46833 * 294.31548 * 3 2 1 35 35 H 1.09002 * 109.47080 * 54.31821 * 3 2 1 36 36 H 1.08997 * 109.47125 * 275.10264 * 7 6 4 37 37 H 1.08998 * 109.47486 * 35.10566 * 7 6 4 38 38 H 1.09006 * 109.47478 * 155.10744 * 7 6 4 39 39 H 1.08997 * 109.46745 * 333.05795 * 8 6 4 40 40 H 1.09004 * 109.46810 * 213.06490 * 8 6 4 41 41 H 0.97003 * 119.99810 * 359.97438 * 11 9 8 42 42 H 1.09007 * 110.53427 * 143.78096 * 13 12 11 43 43 H 1.09000 * 110.53384 * 21.01499 * 13 12 11 44 44 H 1.09001 * 110.90607 * 201.73721 * 14 13 12 45 45 H 1.09002 * 110.90159 * 78.14693 * 14 13 12 46 46 H 1.09005 * 110.53301 * 158.66965 * 15 14 13 47 47 H 1.09003 * 110.53293 * 281.43847 * 15 14 13 48 48 H 1.08999 * 110.07610 * 214.11744 * 18 16 15 49 49 H 1.08999 * 110.08117 * 335.60707 * 18 16 15 50 50 H 0.96997 * 120.00008 * 180.02562 * 23 22 20 51 51 H 1.09007 * 110.07638 * 87.94903 * 28 19 18 52 52 H 1.09007 * 110.07260 * 209.48723 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.3734 -0.6991 2.2487 6 7 3.2137 -1.3582 1.1995 7 6 3.6659 -2.1134 2.3706 8 6 4.0457 -1.3072 -0.0052 9 6 5.0318 -0.1738 0.1130 10 8 5.0392 0.5226 1.1059 11 7 5.9055 0.0661 -0.8849 12 6 6.8644 1.1676 -0.7698 13 6 6.1698 2.5382 -0.6271 14 6 6.1800 3.1138 -2.0668 15 6 7.5856 2.6991 -2.5729 16 6 7.7736 1.2709 -2.0194 17 1 7.5254 0.5144 -2.7638 18 6 9.2161 1.1156 -1.5098 19 7 9.1794 1.4009 -0.0660 20 6 10.1802 1.9588 0.6838 21 1 10.0359 2.1211 1.7418 22 6 11.3801 2.3156 0.0841 23 7 11.5562 2.1172 -1.2051 24 14 12.7452 3.0772 1.1069 25 1 13.1472 2.1315 2.1788 26 1 13.9136 3.3656 0.2368 27 1 12.2599 4.3407 1.7179 28 6 7.8565 0.9692 0.4143 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1252 1.4442 0.1017 34 1 1.7622 1.9260 -0.9365 35 1 1.5960 1.9849 0.8348 36 1 4.1699 -1.4406 3.0644 37 1 2.8067 -2.5674 2.8642 38 1 4.3577 -2.8943 2.0545 39 1 3.4122 -1.1483 -0.8778 40 1 4.5850 -2.2482 -0.1144 41 1 5.8998 -0.4911 -1.6789 42 1 6.7329 3.1840 0.0468 43 1 5.1467 2.4133 -0.2724 44 1 6.0761 4.1988 -2.0526 45 1 5.3978 2.6576 -2.6736 46 1 7.6134 2.6935 -3.6626 47 1 8.3484 3.3675 -2.1735 48 1 9.5659 0.0976 -1.6811 49 1 9.8703 1.8258 -2.0156 50 1 12.3948 2.3663 -1.6240 51 1 7.8859 -0.0834 0.6961 52 1 7.5511 1.5767 1.2663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111767048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:40 Heat of formation + Delta-G solvation = -43.244795 kcal Electronic energy + Delta-G solvation = -31687.437932 eV Core-core repulsion = 27687.630579 eV Total energy + Delta-G solvation = -3999.807353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.70845 -39.79139 -38.13796 -35.47262 -34.65616 -34.45002 -33.46953 -31.45744 -29.69367 -28.97998 -27.68953 -27.29578 -26.65789 -24.66024 -24.36917 -22.79962 -21.50286 -20.58435 -19.78050 -19.01377 -18.61128 -17.66397 -17.34206 -16.78574 -16.38852 -15.60110 -15.23911 -14.94500 -14.72707 -14.34330 -14.21237 -14.09348 -13.70217 -13.51331 -13.47482 -13.22728 -13.11322 -12.80923 -12.64124 -12.45316 -12.29019 -12.22455 -12.11038 -11.88521 -11.35389 -11.27903 -11.12567 -11.05113 -10.91548 -10.69022 -10.58937 -10.34817 -10.23612 -10.13600 -10.03206 -9.96163 -9.85574 -9.77410 -9.63315 -8.79620 -8.75800 -8.63143 -6.88708 -5.67209 -3.11556 2.41222 2.68797 2.75062 3.37152 3.39787 3.43689 3.45454 4.22557 4.45997 4.48797 4.66029 4.69751 4.81136 4.91397 4.94795 5.10425 5.12150 5.25399 5.31577 5.42988 5.46713 5.47936 5.58099 5.61867 5.64050 5.69428 5.80021 5.80736 5.82336 5.97610 5.98353 6.03863 6.07300 6.10003 6.20517 6.24698 6.31807 6.37033 6.52854 6.61026 6.74371 6.79374 6.93026 7.06081 7.13056 7.38365 7.59829 7.67757 7.81218 8.02200 8.34322 8.40719 9.18852 9.79131 10.45950 11.34087 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.003106 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.265591 B = 9011.899489 C = 9707.079008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C -0.147 4.147 4 C 0.526 3.474 5 O -0.537 6.537 6 N -0.597 5.597 7 C 0.088 3.912 8 C 0.084 3.916 9 C 0.487 3.513 10 O -0.516 6.516 11 N -0.707 5.707 12 C 0.156 3.844 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.109 4.109 16 C -0.114 4.114 17 H 0.068 0.932 18 C 0.139 3.861 19 N -0.592 5.592 20 C -0.216 4.216 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.923 5.923 24 Si 0.916 3.084 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.144 3.856 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.396 0.604 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.003 0.997 49 H 0.129 0.871 50 H 0.253 0.747 51 H 0.011 0.989 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.995 -6.803 -5.606 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 C -0.204 4.204 4 C 0.314 3.686 5 O -0.413 6.413 6 N -0.330 5.330 7 C -0.054 4.054 8 C -0.044 4.044 9 C 0.271 3.729 10 O -0.391 6.391 11 N -0.359 5.359 12 C 0.069 3.931 13 C -0.147 4.147 14 C -0.162 4.162 15 C -0.147 4.147 16 C -0.134 4.134 17 H 0.086 0.914 18 C 0.014 3.986 19 N -0.316 5.316 20 C -0.345 4.345 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.572 5.572 24 Si 0.746 3.254 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.211 1.211 28 C 0.016 3.984 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.230 0.770 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.021 0.979 49 H 0.146 0.854 50 H 0.064 0.936 51 H 0.029 0.971 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.088 -6.209 -4.295 19.601 hybrid contribution 0.928 -0.133 0.031 0.938 sum -17.160 -6.342 -4.264 18.785 Atomic orbital electron populations 1.21664 0.92495 1.02337 1.02722 1.21359 0.98224 0.97977 0.96109 1.21823 1.02664 0.93240 1.02702 1.20655 0.80122 0.77672 0.90148 1.90675 1.57204 1.59907 1.33521 1.47394 1.19040 1.51504 1.15017 1.21661 1.00263 0.95534 0.87925 1.21630 0.94006 0.99277 0.89451 1.21049 0.82094 0.86042 0.83732 1.90755 1.70200 1.48443 1.29701 1.46030 1.35476 1.33909 1.20494 1.22148 0.87737 0.85418 0.97772 1.22592 1.00281 0.95061 0.96779 1.22600 0.97408 0.99821 0.96395 1.22445 0.96701 0.96450 0.99059 1.23029 0.98894 0.96845 0.94638 0.91369 1.22033 0.90991 0.99987 0.85611 1.44417 1.10865 1.71293 1.05027 1.19053 0.91710 1.32087 0.91603 0.90447 1.24745 0.97894 1.01767 0.96188 1.69571 1.25068 1.53657 1.08868 0.86131 0.81291 0.79138 0.78845 1.21233 1.21543 1.21120 1.21826 0.85741 0.96851 0.93976 0.91382 0.91806 0.92543 0.89349 0.91114 0.91522 0.91833 0.92020 0.90883 0.91164 0.87207 0.87309 0.77005 0.90466 0.91858 0.92179 0.92517 0.92559 0.90151 0.97942 0.85353 0.93607 0.97086 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.78 37.15 0.33 -0.85 16 2 C -0.12 -1.12 2.61 -91.77 -0.24 -1.36 16 3 C -0.15 -1.55 9.18 37.16 0.34 -1.21 16 4 C 0.53 6.79 6.73 -10.98 -0.07 6.72 16 5 O -0.54 -8.84 15.87 5.55 0.09 -8.76 16 6 N -0.60 -6.83 2.36 -182.95 -0.43 -7.26 16 7 C 0.09 0.97 10.39 59.85 0.62 1.59 16 8 C 0.08 0.74 5.84 -5.19 -0.03 0.71 16 9 C 0.49 6.27 6.00 -10.99 -0.07 6.20 16 10 O -0.52 -8.88 13.49 5.56 0.08 -8.81 16 11 N -0.71 -8.93 5.24 -44.72 -0.23 -9.16 16 12 C 0.16 2.62 0.94 -128.68 -0.12 2.50 16 13 C -0.11 -1.80 5.57 -24.96 -0.14 -1.94 16 14 C -0.12 -1.79 6.92 -24.56 -0.17 -1.96 16 15 C -0.11 -1.78 6.22 -24.96 -0.16 -1.94 16 16 C -0.11 -1.96 3.62 -88.54 -0.32 -2.28 16 17 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 18 C 0.14 3.20 5.56 -3.25 -0.02 3.18 16 19 N -0.59 -14.85 3.39 -169.90 -0.58 -15.42 16 20 C -0.22 -5.97 10.34 -15.06 -0.16 -6.12 16 21 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 23 N -0.92 -25.93 10.08 55.49 0.56 -25.37 16 24 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C 0.14 3.11 5.47 -2.19 -0.01 3.09 16 29 H 0.07 0.70 7.86 -51.93 -0.41 0.30 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.62 5.91 -51.93 -0.31 0.32 16 33 H 0.07 0.89 5.14 -51.93 -0.27 0.63 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.79 7.63 -51.93 -0.40 0.40 16 38 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 39 H 0.11 0.65 5.63 -51.93 -0.29 0.36 16 40 H 0.11 0.68 7.91 -51.93 -0.41 0.27 16 41 H 0.40 3.69 8.29 -40.82 -0.34 3.35 16 42 H 0.08 1.49 7.57 -51.93 -0.39 1.10 16 43 H 0.06 1.03 6.21 -51.93 -0.32 0.71 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 48 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 49 H 0.13 3.31 4.90 -51.93 -0.25 3.05 16 50 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.01 0.26 8.08 -51.92 -0.42 -0.16 16 52 H 0.05 1.14 7.63 -51.93 -0.40 0.74 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -33.74 396.29 -8.64 -42.38 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.76 Total: 3.65 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.31 Total: 5.93 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.68 Total: -57.22 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.16 Total: -17.56 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.74 -8.64 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111767048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.863 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds