Wall clock time and date at job start Tue Mar 31 2020 19:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47421 * 2 1 4 4 C 1.50704 * 109.46964 * 120.00058 * 2 1 3 5 5 O 1.21286 * 119.99925 * 330.39320 * 4 2 1 6 6 N 1.34773 * 120.00053 * 150.40204 * 4 2 1 7 7 C 1.46499 * 120.00038 * 183.52891 * 6 4 2 8 8 C 1.46504 * 120.00184 * 3.52644 * 6 4 2 9 9 C 1.50694 * 109.46944 * 93.06123 * 8 6 4 10 10 O 1.21278 * 120.00533 * 0.02562 * 9 8 6 11 11 N 1.34782 * 119.99768 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99897 * 180.02562 * 11 9 8 13 13 C 1.54319 * 112.36140 * 299.33418 * 12 11 9 14 14 C 1.55053 * 103.94146 * 262.39279 * 13 12 11 15 15 C 1.55050 * 102.10741 * 319.94629 * 14 13 12 16 16 C 1.54315 * 103.94063 * 40.05389 * 15 14 13 17 17 H 1.09005 * 111.69150 * 97.20649 * 16 15 14 18 18 C 1.53774 * 109.06368 * 221.16543 * 16 15 14 19 19 N 1.47217 * 106.38124 * 94.89055 * 18 16 15 20 20 C 1.36933 * 126.70423 * 211.27723 * 19 18 16 21 21 H 1.08004 * 119.99783 * 179.97438 * 20 19 18 22 22 C 1.38805 * 120.00026 * 359.97438 * 20 19 18 23 23 N 1.31621 * 120.00368 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99965 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47073 * 59.99986 * 24 22 20 26 26 H 1.48501 * 109.47174 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47340 * 300.00283 * 24 22 20 28 28 C 1.47212 * 106.59112 * 31.28253 * 19 18 16 29 29 H 1.09007 * 109.47110 * 299.99986 * 1 2 3 30 30 H 1.09000 * 109.47281 * 60.00280 * 1 2 3 31 31 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47201 * 239.99555 * 2 1 3 33 33 H 1.08994 * 109.47378 * 174.31991 * 3 2 1 34 34 H 1.08999 * 109.46833 * 294.31548 * 3 2 1 35 35 H 1.09002 * 109.47080 * 54.31821 * 3 2 1 36 36 H 1.08997 * 109.47125 * 275.10264 * 7 6 4 37 37 H 1.08998 * 109.47486 * 35.10566 * 7 6 4 38 38 H 1.09006 * 109.47478 * 155.10744 * 7 6 4 39 39 H 1.08997 * 109.46745 * 333.05795 * 8 6 4 40 40 H 1.09004 * 109.46810 * 213.06490 * 8 6 4 41 41 H 0.97003 * 119.99810 * 359.97438 * 11 9 8 42 42 H 1.09007 * 110.53427 * 143.78096 * 13 12 11 43 43 H 1.09000 * 110.53384 * 21.01499 * 13 12 11 44 44 H 1.09001 * 110.90607 * 201.73721 * 14 13 12 45 45 H 1.09002 * 110.90159 * 78.14693 * 14 13 12 46 46 H 1.09005 * 110.53301 * 158.66965 * 15 14 13 47 47 H 1.09003 * 110.53293 * 281.43847 * 15 14 13 48 48 H 1.08999 * 110.07610 * 214.11744 * 18 16 15 49 49 H 1.08999 * 110.08117 * 335.60707 * 18 16 15 50 50 H 0.96997 * 120.00008 * 180.02562 * 23 22 20 51 51 H 1.09007 * 110.07638 * 87.94903 * 28 19 18 52 52 H 1.09007 * 110.07260 * 209.48723 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.3734 -0.6991 2.2487 6 7 3.2137 -1.3582 1.1995 7 6 3.6659 -2.1134 2.3706 8 6 4.0457 -1.3072 -0.0052 9 6 5.0318 -0.1738 0.1130 10 8 5.0392 0.5226 1.1059 11 7 5.9055 0.0661 -0.8849 12 6 6.8644 1.1676 -0.7698 13 6 6.1698 2.5382 -0.6271 14 6 6.1800 3.1138 -2.0668 15 6 7.5856 2.6991 -2.5729 16 6 7.7736 1.2709 -2.0194 17 1 7.5254 0.5144 -2.7638 18 6 9.2161 1.1156 -1.5098 19 7 9.1794 1.4009 -0.0660 20 6 10.1802 1.9588 0.6838 21 1 10.0359 2.1211 1.7418 22 6 11.3801 2.3156 0.0841 23 7 11.5562 2.1172 -1.2051 24 14 12.7452 3.0772 1.1069 25 1 13.1472 2.1315 2.1788 26 1 13.9136 3.3656 0.2368 27 1 12.2599 4.3407 1.7179 28 6 7.8565 0.9692 0.4143 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1252 1.4442 0.1017 34 1 1.7622 1.9260 -0.9365 35 1 1.5960 1.9849 0.8348 36 1 4.1699 -1.4406 3.0644 37 1 2.8067 -2.5674 2.8642 38 1 4.3577 -2.8943 2.0545 39 1 3.4122 -1.1483 -0.8778 40 1 4.5850 -2.2482 -0.1144 41 1 5.8998 -0.4911 -1.6789 42 1 6.7329 3.1840 0.0468 43 1 5.1467 2.4133 -0.2724 44 1 6.0761 4.1988 -2.0526 45 1 5.3978 2.6576 -2.6736 46 1 7.6134 2.6935 -3.6626 47 1 8.3484 3.3675 -2.1735 48 1 9.5659 0.0976 -1.6811 49 1 9.8703 1.8258 -2.0156 50 1 12.3948 2.3663 -1.6240 51 1 7.8859 -0.0834 0.6961 52 1 7.5511 1.5767 1.2663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111767048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:39 Heat of formation + Delta-G solvation = -66.308309 kcal Electronic energy + Delta-G solvation = -31688.438041 eV Core-core repulsion = 27687.630579 eV Total energy + Delta-G solvation = -4000.807462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78195 -40.97963 -39.40958 -36.50727 -36.16006 -35.45735 -34.66062 -33.40063 -31.09700 -30.21475 -28.95084 -28.10255 -27.70725 -26.26402 -26.11642 -23.63468 -22.73174 -22.23312 -21.05074 -20.28833 -19.67902 -19.01312 -18.50203 -18.00856 -17.45470 -16.94243 -16.66759 -16.24990 -16.04000 -15.59457 -15.40692 -15.17308 -15.04820 -14.92667 -14.67935 -14.52164 -14.47721 -14.05734 -13.56595 -13.52942 -13.36740 -13.13641 -13.08642 -12.99672 -12.85605 -12.81932 -12.69834 -12.21728 -12.11209 -12.02810 -12.01159 -11.87672 -11.78225 -11.70010 -11.58182 -11.55635 -11.39103 -11.01421 -10.76808 -10.73650 -9.97571 -9.74096 -8.90684 -7.77346 -5.24736 1.44018 1.45079 1.46688 1.53259 1.69957 1.90207 2.33726 2.48872 3.28322 3.43445 3.46918 3.69133 3.80848 3.83333 3.90134 3.96571 4.00052 4.08908 4.29162 4.36510 4.44154 4.45819 4.51204 4.54283 4.61983 4.63585 4.73907 4.77508 4.78372 4.85787 4.87858 4.91577 4.93950 4.99376 5.03537 5.07821 5.13617 5.23238 5.28413 5.30003 5.35878 5.39333 5.42489 5.49437 5.65405 5.76641 5.86685 6.22452 6.39190 6.71280 7.09111 7.10258 7.40533 7.75358 8.41422 9.20496 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.003106 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.265591 B = 9011.899489 C = 9707.079008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C -0.143 4.143 4 C 0.514 3.486 5 O -0.585 6.585 6 N -0.599 5.599 7 C 0.087 3.913 8 C 0.088 3.912 9 C 0.486 3.514 10 O -0.565 6.565 11 N -0.694 5.694 12 C 0.175 3.825 13 C -0.106 4.106 14 C -0.108 4.108 15 C -0.107 4.107 16 C -0.101 4.101 17 H 0.111 0.889 18 C 0.140 3.860 19 N -0.613 5.613 20 C -0.241 4.241 21 H 0.068 0.932 22 C -0.056 4.056 23 N -0.939 5.939 24 Si 0.976 3.024 25 H -0.282 1.282 26 H -0.286 1.286 27 H -0.281 1.281 28 C 0.145 3.855 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.128 0.872 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.030 0.970 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.419 0.581 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.035 0.965 48 H -0.018 1.018 49 H 0.100 0.900 50 H 0.250 0.750 51 H 0.000 1.000 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.785 -8.022 -8.825 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.131 4.131 3 C -0.200 4.200 4 C 0.304 3.696 5 O -0.465 6.465 6 N -0.329 5.329 7 C -0.056 4.056 8 C -0.038 4.038 9 C 0.272 3.728 10 O -0.443 6.443 11 N -0.347 5.347 12 C 0.087 3.913 13 C -0.144 4.144 14 C -0.146 4.146 15 C -0.145 4.145 16 C -0.121 4.121 17 H 0.129 0.871 18 C 0.015 3.985 19 N -0.337 5.337 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.249 4.249 23 N -0.588 5.588 24 Si 0.804 3.196 25 H -0.209 1.209 26 H -0.211 1.211 27 H -0.207 1.207 28 C 0.017 3.983 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.257 0.743 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.054 0.946 48 H 0.000 1.000 49 H 0.118 0.882 50 H 0.060 0.940 51 H 0.018 0.982 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -19.890 -7.468 -7.562 22.551 hybrid contribution 1.531 0.226 1.130 1.916 sum -18.359 -7.241 -6.432 20.757 Atomic orbital electron populations 1.21661 0.91917 1.02645 1.02772 1.21452 0.98704 0.97191 0.95772 1.21788 1.01080 0.93904 1.03247 1.21430 0.80203 0.77241 0.90706 1.90650 1.58749 1.61555 1.35522 1.47561 1.18865 1.50676 1.15842 1.21674 1.00485 0.95561 0.87882 1.21927 0.93532 0.98802 0.89537 1.21861 0.82068 0.86288 0.82588 1.90768 1.71513 1.50379 1.31672 1.45779 1.34225 1.33064 1.21663 1.21650 0.87599 0.87078 0.94991 1.22482 0.99662 0.94358 0.97944 1.22556 0.96980 1.00505 0.94517 1.22363 0.96760 0.94684 1.00646 1.22921 0.94835 0.98933 0.95382 0.87113 1.21905 0.94506 0.97678 0.84426 1.44638 1.11647 1.71324 1.06137 1.19286 0.93106 1.32824 0.91793 0.91429 1.25482 0.99747 1.02301 0.97373 1.69815 1.25172 1.54011 1.09822 0.85199 0.78578 0.78314 0.77503 1.20864 1.21150 1.20689 1.21877 0.85836 0.95172 0.95377 0.93958 0.89097 0.92143 0.85397 0.93068 0.88618 0.94212 0.95157 0.91284 0.88002 0.83036 0.83555 0.74278 0.94604 0.91260 0.91537 0.88590 0.89557 0.94626 1.00015 0.88217 0.93980 0.98197 0.96266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.78 71.98 0.63 -1.36 16 2 C -0.11 -1.79 2.61 -11.54 -0.03 -1.82 16 3 C -0.14 -2.67 9.18 71.98 0.66 -2.01 16 4 C 0.51 12.62 6.73 87.66 0.59 13.21 16 5 O -0.58 -19.65 15.87 -3.05 -0.05 -19.70 16 6 N -0.60 -12.44 2.36 -851.12 -2.01 -14.45 16 7 C 0.09 1.85 10.39 127.77 1.33 3.17 16 8 C 0.09 1.15 5.84 85.63 0.50 1.65 16 9 C 0.49 11.23 6.00 87.65 0.53 11.76 16 10 O -0.57 -19.38 13.49 -3.02 -0.04 -19.42 16 11 N -0.69 -15.13 5.24 -413.79 -2.17 -17.30 16 12 C 0.18 5.67 0.94 5.64 0.01 5.67 16 13 C -0.11 -3.44 5.57 31.74 0.18 -3.26 16 14 C -0.11 -2.76 6.92 32.00 0.22 -2.54 16 15 C -0.11 -3.28 6.22 31.74 0.20 -3.09 16 16 C -0.10 -3.28 3.62 -9.44 -0.03 -3.31 16 17 H 0.11 2.71 7.71 -2.38 -0.02 2.69 16 18 C 0.14 6.55 5.56 86.50 0.48 7.03 16 19 N -0.61 -32.12 3.39 -691.43 -2.35 -34.46 16 20 C -0.24 -13.95 10.34 84.03 0.87 -13.08 16 21 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.06 -3.17 5.49 84.86 0.47 -2.71 16 23 N -0.94 -54.32 10.08 21.65 0.22 -54.10 16 24 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 C 0.14 6.49 5.47 87.19 0.48 6.97 16 29 H 0.04 0.85 7.86 -2.38 -0.02 0.83 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 1.03 5.91 -2.39 -0.01 1.02 16 33 H 0.05 1.18 5.14 -2.39 -0.01 1.17 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 1.51 7.63 -2.39 -0.02 1.49 16 38 H 0.10 1.47 7.87 -2.38 -0.02 1.45 16 39 H 0.15 0.77 5.63 -2.39 -0.01 0.76 16 40 H 0.15 0.96 7.91 -2.38 -0.02 0.94 16 41 H 0.42 5.47 8.29 -92.71 -0.77 4.70 16 42 H 0.04 1.44 7.57 -2.38 -0.02 1.42 16 43 H 0.07 2.17 6.21 -2.39 -0.01 2.16 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.03 1.41 7.58 -2.39 -0.02 1.40 16 48 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 49 H 0.10 5.31 4.90 -2.39 -0.01 5.29 16 50 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 51 H 0.00 0.01 8.08 -2.38 -0.02 0.00 16 52 H 0.02 0.95 7.63 -2.38 -0.02 0.93 16 Total: -1.00 -82.51 396.29 2.85 -79.66 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.15 Total: 15.39 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 7.06 Total: 16.29 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -6.31 Total: -120.31 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -0.09 Total: -39.12 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -82.51 2.85 -79.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111767048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.355 kcal (2) G-P(sol) polarization free energy of solvation -82.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds