Wall clock time and date at job start Tue Mar 31 2020 20:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47125 * 2 1 4 4 H 1.09002 * 109.47087 * 304.99674 * 3 2 1 5 5 C 1.53001 * 109.47350 * 65.00083 * 3 2 1 6 6 C 1.50709 * 109.47079 * 184.99924 * 3 2 1 7 7 O 1.21281 * 119.99753 * 0.02562 * 6 3 2 8 8 N 1.34778 * 120.00069 * 180.02562 * 6 3 2 9 9 C 1.46493 * 119.99700 * 180.02562 * 8 6 3 10 10 C 1.50706 * 109.47128 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99503 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72554 * 10 9 8 13 13 C 1.46506 * 119.99968 * 180.02562 * 12 10 9 14 14 C 1.54185 * 111.60902 * 298.58352 * 13 12 10 15 15 C 1.56225 * 103.64731 * 260.32528 * 14 13 12 16 16 C 1.54859 * 103.17589 * 322.66419 * 15 14 13 17 17 C 1.54188 * 104.29718 * 37.76390 * 16 15 14 18 18 H 1.09004 * 112.24544 * 98.78998 * 17 16 15 19 19 C 1.53793 * 109.12071 * 223.08221 * 17 16 15 20 20 N 1.47229 * 106.35492 * 132.67644 * 19 17 16 21 21 C 1.36936 * 126.70425 * 148.74193 * 20 19 17 22 22 H 1.07997 * 120.00261 * 180.02562 * 21 20 19 23 23 C 1.38815 * 119.99744 * 0.02848 * 21 20 19 24 24 N 1.31618 * 119.99811 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99976 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46821 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47188 * 119.99455 * 25 23 21 28 28 H 1.48496 * 109.47277 * 239.99872 * 25 23 21 29 29 C 1.47222 * 106.59224 * 328.76418 * 20 19 17 30 30 H 1.09006 * 109.46778 * 300.00237 * 1 2 3 31 31 H 1.09003 * 109.47460 * 59.99859 * 1 2 3 32 32 H 1.08992 * 109.47400 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47205 * 239.99925 * 2 1 3 34 34 H 1.08999 * 109.47009 * 119.99965 * 2 1 3 35 35 H 1.09002 * 109.47144 * 179.97438 * 5 3 2 36 36 H 1.08995 * 109.46867 * 299.99830 * 5 3 2 37 37 H 1.08998 * 109.46710 * 60.00091 * 5 3 2 38 38 H 0.97005 * 119.99770 * 359.97438 * 8 6 3 39 39 H 1.09001 * 109.47786 * 60.00101 * 9 8 6 40 40 H 1.08998 * 109.47558 * 299.99963 * 9 8 6 41 41 H 0.96998 * 120.00525 * 359.97438 * 12 10 9 42 42 H 1.08998 * 110.46967 * 20.29354 * 14 13 12 43 43 H 1.09007 * 110.46560 * 142.88843 * 14 13 12 44 44 H 1.08992 * 110.87249 * 204.05534 * 15 14 13 45 45 H 1.09005 * 110.39083 * 81.04248 * 15 14 13 46 46 H 1.09001 * 110.46702 * 279.06030 * 16 15 14 47 47 H 1.09000 * 110.46800 * 156.46771 * 16 15 14 48 48 H 1.08995 * 110.08274 * 13.44944 * 19 17 16 49 49 H 1.09007 * 110.12743 * 251.91698 * 19 17 16 50 50 H 0.97001 * 119.99604 * 180.02562 * 24 23 21 51 51 H 1.08998 * 110.08048 * 272.00596 * 29 20 19 52 52 H 1.09006 * 110.12166 * 150.48389 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5420 1.4443 -0.1238 7 8 4.1450 0.3951 -0.2046 8 7 4.2150 2.6117 -0.1448 9 6 5.6750 2.6134 -0.2657 10 6 6.1774 4.0342 -0.2656 11 8 5.3931 4.9547 -0.1740 12 7 7.4987 4.2818 -0.3622 13 6 7.9872 5.6630 -0.3615 14 6 7.4338 6.4616 -1.5587 15 6 8.6080 6.4424 -2.5890 16 6 9.8653 6.5675 -1.6936 17 6 9.5305 5.7239 -0.4471 18 1 9.9713 4.7279 -0.4923 19 6 9.9782 6.4855 0.8117 20 7 8.8498 6.4259 1.7555 21 6 8.9264 6.4051 3.1226 22 1 8.0236 6.3598 3.7135 23 6 10.1647 6.4422 3.7489 24 7 11.2650 6.4969 3.0288 25 14 10.2693 6.4145 5.6138 26 1 8.9001 6.3526 6.1855 27 1 11.0420 5.2232 6.0486 28 1 10.9487 7.6461 6.0898 29 6 7.6229 6.3926 0.9424 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9990 3.1541 1.3075 36 1 0.5490 2.1253 1.3969 37 1 2.0699 1.5875 2.1491 38 1 3.7326 3.4509 -0.0805 39 1 5.9630 2.1267 -1.1975 40 1 6.1099 2.0738 0.5756 41 1 8.1264 3.5455 -0.4314 42 1 6.5384 5.9828 -1.9551 43 1 7.2195 7.4892 -1.2650 44 1 8.5367 7.2865 -3.2748 45 1 8.6166 5.5005 -3.1376 46 1 10.0334 7.6080 -1.4157 47 1 10.7389 6.1625 -2.2045 48 1 10.2027 7.5224 0.5618 49 1 10.8558 6.0075 1.2472 50 1 12.1303 6.5224 3.4665 51 1 7.2915 7.4076 0.7233 52 1 6.8387 5.8487 1.4691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111988708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:05 Heat of formation + Delta-G solvation = -62.386320 kcal Electronic energy + Delta-G solvation = -30420.582799 eV Core-core repulsion = 26419.945407 eV Total energy + Delta-G solvation = -4000.637392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.55802 -39.87937 -38.20451 -35.69371 -34.62353 -34.46186 -33.52972 -31.46262 -30.37878 -29.56146 -28.37470 -27.05515 -25.41408 -24.77073 -24.33440 -22.11835 -21.32850 -20.31372 -20.17085 -19.48634 -18.92560 -17.78198 -17.04096 -16.34324 -16.06329 -15.97225 -15.54680 -15.33307 -14.95648 -14.65300 -14.52364 -14.12096 -13.82109 -13.75138 -13.50986 -13.28925 -13.00905 -12.75256 -12.50568 -12.45406 -12.39018 -11.93858 -11.84966 -11.68350 -11.50907 -11.26438 -11.09094 -11.06549 -10.95177 -10.85158 -10.76962 -10.62884 -10.32102 -10.27777 -9.96261 -9.92879 -9.79272 -9.65193 -9.47460 -9.27489 -8.79481 -8.64813 -6.88993 -5.66829 -3.11562 2.48638 2.69978 2.80467 3.37400 3.43522 3.45621 3.50836 4.42822 4.45371 4.51163 4.64641 4.69161 4.86971 4.96510 5.03429 5.09590 5.18859 5.21186 5.23425 5.29142 5.35113 5.45629 5.54432 5.61568 5.64291 5.71155 5.72281 5.78799 5.79671 5.85470 5.95731 5.98575 6.01333 6.06915 6.08726 6.18360 6.22446 6.33973 6.43218 6.50731 6.63136 6.72440 6.79218 7.07840 7.36720 7.42688 7.58317 7.66879 7.81162 8.07575 8.32473 8.36849 9.18663 9.79083 10.46290 11.34083 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.002910 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.571230 B = 9619.068980 C =11361.364025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.109 4.109 4 H 0.098 0.902 5 C -0.148 4.148 6 C 0.518 3.482 7 O -0.544 6.544 8 N -0.715 5.715 9 C 0.098 3.902 10 C 0.508 3.492 11 O -0.538 6.538 12 N -0.697 5.697 13 C 0.160 3.840 14 C -0.117 4.117 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.112 4.112 18 H 0.075 0.925 19 C 0.139 3.861 20 N -0.598 5.598 21 C -0.215 4.215 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.136 3.864 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.412 0.588 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.400 0.600 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.012 0.988 49 H 0.123 0.877 50 H 0.252 0.748 51 H 0.026 0.974 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 -8.133 -11.266 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.130 4.130 4 H 0.116 0.884 5 C -0.206 4.206 6 C 0.304 3.696 7 O -0.421 6.421 8 N -0.370 5.370 9 C -0.030 4.030 10 C 0.293 3.707 11 O -0.415 6.415 12 N -0.347 5.347 13 C 0.073 3.927 14 C -0.155 4.155 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.132 4.132 18 H 0.093 0.907 19 C 0.013 3.987 20 N -0.321 5.321 21 C -0.343 4.343 22 H 0.095 0.905 23 C -0.208 4.208 24 N -0.571 5.571 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.009 3.991 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.250 0.750 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.234 0.766 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.030 0.970 49 H 0.141 0.859 50 H 0.063 0.937 51 H 0.044 0.956 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.310 -8.185 -11.025 19.833 hybrid contribution 0.273 0.101 0.930 0.974 sum -14.038 -8.084 -10.095 19.087 Atomic orbital electron populations 1.21848 0.95473 1.01880 1.01928 1.21343 0.95338 0.94109 1.03525 1.21340 0.91361 0.99499 1.00816 0.88421 1.21856 1.02381 1.00607 0.95721 1.20718 0.90143 0.83145 0.75558 1.90698 1.70365 1.31433 1.49594 1.45743 1.06493 1.09936 1.74865 1.21080 0.82339 0.95075 1.04468 1.20339 0.83174 0.90597 0.76589 1.90680 1.55317 1.45733 1.49798 1.45925 1.06482 1.09126 1.73199 1.21825 0.94165 0.80217 0.96476 1.22880 0.97458 1.00330 0.94863 1.22764 0.95269 1.00798 0.97336 1.22431 0.96906 1.00566 0.95215 1.23000 0.92164 0.99929 0.98121 0.90682 1.22090 0.94670 0.96347 0.85573 1.44594 1.00130 1.85831 1.01572 1.19140 0.92813 1.42335 0.80022 0.90482 1.24764 0.95226 1.02616 0.98204 1.69601 0.96931 1.58015 1.32591 0.85984 0.77440 0.77265 0.84763 1.20555 1.21746 1.21721 1.21671 0.90861 0.96491 0.90095 0.92362 0.92706 0.92482 0.91149 0.91252 0.91806 0.91094 0.91940 0.74971 0.88693 0.88417 0.76558 0.91211 0.90832 0.92055 0.92250 0.91034 0.91970 0.96975 0.85931 0.93722 0.95602 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.11 -0.90 4.75 -26.73 -0.13 -1.02 16 3 C -0.11 -0.94 2.72 -91.77 -0.25 -1.19 16 4 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.15 -1.14 8.84 37.16 0.33 -0.81 16 6 C 0.52 6.15 7.16 -10.98 -0.08 6.07 16 7 O -0.54 -8.25 15.92 5.56 0.09 -8.16 16 8 N -0.72 -8.26 5.42 -61.47 -0.33 -8.59 16 9 C 0.10 1.17 6.15 -5.19 -0.03 1.14 16 10 C 0.51 7.30 6.88 -10.98 -0.08 7.23 16 11 O -0.54 -9.06 13.17 5.56 0.07 -8.99 16 12 N -0.70 -10.21 5.23 -45.83 -0.24 -10.45 16 13 C 0.16 2.74 0.94 -129.89 -0.12 2.62 16 14 C -0.12 -1.78 5.75 -24.38 -0.14 -1.92 16 15 C -0.12 -1.63 6.92 -24.02 -0.17 -1.79 16 16 C -0.11 -1.68 6.38 -25.13 -0.16 -1.84 16 17 C -0.11 -1.97 3.67 -88.70 -0.33 -2.30 16 18 H 0.07 1.26 7.69 -51.93 -0.40 0.86 16 19 C 0.14 3.22 5.77 -3.23 -0.02 3.20 16 20 N -0.60 -15.10 3.39 -171.10 -0.58 -15.68 16 21 C -0.21 -5.96 10.34 -15.06 -0.16 -6.12 16 22 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 23 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 24 N -0.92 -26.27 10.08 55.49 0.56 -25.71 16 25 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 C 0.14 2.94 6.00 -3.24 -0.02 2.92 16 30 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.67 7.95 -51.93 -0.41 0.25 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.50 7.56 -51.93 -0.39 0.10 16 36 H 0.07 0.43 6.56 -51.93 -0.34 0.09 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 4.56 6.85 -40.82 -0.28 4.28 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.40 4.99 8.28 -40.82 -0.34 4.65 16 42 H 0.07 1.07 6.70 -51.93 -0.35 0.72 16 43 H 0.07 1.19 7.18 -51.93 -0.37 0.81 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.07 1.13 7.17 -51.93 -0.37 0.76 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.01 0.30 7.12 -51.93 -0.37 -0.07 16 49 H 0.12 3.23 5.44 -51.93 -0.28 2.95 16 50 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.03 0.58 7.13 -51.93 -0.37 0.21 16 52 H 0.05 1.09 6.73 -51.93 -0.35 0.75 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -32.19 398.03 -9.28 -41.47 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.74 Total: 8.03 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.08 Total: 5.10 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.59 Total: -60.42 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.16 Total: -17.15 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.19 -9.28 -41.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111988708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.919 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds