Wall clock time and date at job start Tue Mar 31 2020 20:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47284 * 2 1 4 4 H 1.08998 * 109.47202 * 54.99386 * 3 2 1 5 5 C 1.52999 * 109.46826 * 294.99449 * 3 2 1 6 6 C 1.50700 * 109.46931 * 174.99852 * 3 2 1 7 7 O 1.21277 * 120.00122 * 359.97438 * 6 3 2 8 8 N 1.34775 * 119.99762 * 179.97438 * 6 3 2 9 9 C 1.46504 * 120.00175 * 179.97438 * 8 6 3 10 10 C 1.50700 * 109.47470 * 179.97438 * 9 8 6 11 11 O 1.21279 * 119.99476 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99830 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99447 * 180.02562 * 12 10 9 14 14 C 1.54320 * 112.36421 * 299.33693 * 13 12 10 15 15 C 1.55058 * 103.93678 * 262.39503 * 14 13 12 16 16 C 1.55046 * 102.10897 * 319.94369 * 15 14 13 17 17 C 1.54321 * 103.94132 * 40.05769 * 16 15 14 18 18 H 1.08996 * 111.69109 * 97.20777 * 17 16 15 19 19 C 1.53775 * 109.06328 * 221.17134 * 17 16 15 20 20 N 1.47212 * 106.38427 * 94.88978 * 19 17 16 21 21 C 1.36938 * 126.70266 * 211.28074 * 20 19 17 22 22 H 1.08003 * 119.99838 * 162.12287 * 21 20 19 23 23 C 1.38809 * 120.00053 * 342.12229 * 21 20 19 24 24 N 1.31622 * 120.00110 * 159.76608 * 23 21 20 25 25 Si 1.86801 * 120.00282 * 339.76883 * 23 21 20 26 26 H 1.48504 * 109.47237 * 84.67888 * 25 23 21 27 27 H 1.48494 * 109.47415 * 204.68263 * 25 23 21 28 28 H 1.48499 * 109.46777 * 324.68216 * 25 23 21 29 29 C 1.47212 * 106.59502 * 31.27925 * 20 19 17 30 30 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46959 * 300.00738 * 1 2 3 32 32 H 1.09004 * 109.46529 * 60.00064 * 1 2 3 33 33 H 1.08998 * 109.46959 * 239.99262 * 2 1 3 34 34 H 1.09004 * 109.46529 * 119.99936 * 2 1 3 35 35 H 1.08998 * 109.47179 * 299.99952 * 5 3 2 36 36 H 1.09007 * 109.47312 * 60.00617 * 5 3 2 37 37 H 1.08997 * 109.47201 * 180.02562 * 5 3 2 38 38 H 0.96999 * 120.00153 * 359.97438 * 8 6 3 39 39 H 1.09004 * 109.46409 * 60.00019 * 9 8 6 40 40 H 1.08997 * 109.46798 * 300.00325 * 9 8 6 41 41 H 0.97000 * 120.00337 * 359.97438 * 12 10 9 42 42 H 1.08996 * 110.53441 * 143.78233 * 14 13 12 43 43 H 1.09003 * 110.53008 * 21.00435 * 14 13 12 44 44 H 1.08995 * 110.90475 * 201.73772 * 15 14 13 45 45 H 1.09007 * 110.89991 * 78.14479 * 15 14 13 46 46 H 1.09005 * 110.53753 * 158.67344 * 16 15 14 47 47 H 1.09005 * 110.53240 * 281.44325 * 16 15 14 48 48 H 1.09006 * 110.07201 * 214.12196 * 19 17 16 49 49 H 1.09007 * 110.07570 * 335.60060 * 19 17 16 50 50 H 0.97004 * 120.00051 * 180.02562 * 24 23 21 51 51 H 1.09001 * 110.07316 * 87.94971 * 29 20 19 52 52 H 1.08998 * 110.07728 * 209.49220 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6354 2.1264 -1.3074 6 6 3.5420 1.4442 0.1239 7 8 4.1450 0.3950 0.2047 8 7 4.2150 2.6116 0.1448 9 6 5.6751 2.6134 0.2658 10 6 6.1776 4.0342 0.2644 11 8 5.3933 4.9546 0.1720 12 7 7.4985 4.2818 0.3659 13 6 7.9869 5.6630 0.3651 14 6 7.6280 6.4120 -0.9356 15 6 8.9134 6.3031 -1.7960 16 6 10.0299 6.5118 -0.7406 17 6 9.5293 5.7271 0.4903 18 1 9.9727 4.7327 0.5417 19 6 9.8192 6.5455 1.7595 20 7 8.5915 7.3020 2.0552 21 6 8.5119 8.5329 2.6501 22 1 7.6084 9.1180 2.5617 23 6 9.5924 9.0285 3.3668 24 7 9.6928 10.3207 3.5964 25 14 10.9040 7.8618 4.0055 26 1 11.9031 7.6074 2.9367 27 1 11.5791 8.4708 5.1795 28 1 10.2723 6.5795 4.4079 29 6 7.4660 6.4770 1.5864 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0701 1.5873 -2.1491 36 1 0.5490 2.1252 -1.3971 37 1 1.9991 3.1539 -1.3077 38 1 3.7328 3.4507 0.0798 39 1 6.1099 2.0738 -0.5755 40 1 5.9630 2.1267 1.1976 41 1 8.1257 3.5456 0.4402 42 1 7.3967 7.4559 -0.7242 43 1 6.7901 5.9275 -1.4369 44 1 8.9422 7.0868 -2.5529 45 1 8.9916 5.3176 -2.2552 46 1 10.9747 6.1016 -1.0973 47 1 10.1373 7.5699 -0.5018 48 1 10.0566 5.8787 2.5885 49 1 10.6482 7.2306 1.5818 50 1 10.4481 10.6671 4.0969 51 1 7.1490 5.7941 2.3746 52 1 6.6344 7.1144 1.2862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111988711.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:07 Heat of formation + Delta-G solvation = -85.446300 kcal Electronic energy + Delta-G solvation = -30345.231828 eV Core-core repulsion = 26343.594480 eV Total energy + Delta-G solvation = -4001.637348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.82135 -40.98681 -39.68190 -36.46119 -36.37364 -35.53089 -34.83443 -33.83263 -31.41369 -30.92465 -30.07719 -28.39980 -26.70276 -26.20855 -25.75715 -23.07207 -22.59960 -22.23274 -21.21886 -20.76471 -20.40211 -19.20121 -18.57216 -17.69245 -17.26819 -17.17265 -16.89092 -16.62411 -16.26151 -15.80482 -15.63486 -15.55003 -15.35567 -15.05934 -14.91695 -14.64811 -14.43737 -14.25043 -14.00105 -13.75386 -13.40584 -13.26364 -13.13232 -12.96048 -12.84603 -12.57335 -12.55460 -12.50885 -12.31218 -12.09608 -11.95607 -11.73920 -11.71048 -11.65367 -11.57872 -11.52023 -11.41295 -10.95675 -10.88483 -10.82363 -10.26707 -10.09836 -9.11061 -8.19510 -5.48632 1.26502 1.37348 1.45864 1.48778 1.59833 1.73070 2.38114 2.39656 3.02723 3.24896 3.33129 3.60185 3.62327 3.71749 3.73562 3.88307 3.99433 4.24943 4.29934 4.31797 4.32471 4.39674 4.43113 4.43953 4.53949 4.58693 4.63342 4.68088 4.74401 4.76917 4.84692 4.90642 4.95503 4.97250 4.98759 5.03818 5.12566 5.15187 5.18987 5.21317 5.23857 5.27915 5.38547 5.50406 5.51500 5.55247 5.68011 6.06805 6.44200 6.49111 6.69390 7.14631 7.17185 7.48480 8.06894 9.00317 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018745 B = 0.002462 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.382649 B =11369.614474 C =11822.261922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.107 4.107 4 H 0.112 0.888 5 C -0.143 4.143 6 C 0.518 3.482 7 O -0.578 6.578 8 N -0.716 5.716 9 C 0.105 3.895 10 C 0.510 3.490 11 O -0.562 6.562 12 N -0.692 5.692 13 C 0.173 3.827 14 C -0.108 4.108 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.095 4.095 18 H 0.125 0.875 19 C 0.104 3.896 20 N -0.618 5.618 21 C -0.233 4.233 22 H 0.053 0.947 23 C -0.038 4.038 24 N -0.958 5.958 25 Si 0.951 3.049 26 H -0.261 1.261 27 H -0.309 1.309 28 H -0.268 1.268 29 C 0.142 3.858 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.420 0.580 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.044 0.956 48 H 0.027 0.973 49 H 0.052 0.948 50 H 0.263 0.737 51 H 0.012 0.988 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.244 -22.109 -13.367 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.128 4.128 4 H 0.130 0.870 5 C -0.201 4.201 6 C 0.306 3.694 7 O -0.458 6.458 8 N -0.370 5.370 9 C -0.022 4.022 10 C 0.297 3.703 11 O -0.440 6.440 12 N -0.345 5.345 13 C 0.085 3.915 14 C -0.147 4.147 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.115 4.115 18 H 0.143 0.857 19 C -0.021 4.021 20 N -0.343 5.343 21 C -0.361 4.361 22 H 0.071 0.929 23 C -0.232 4.232 24 N -0.605 5.605 25 Si 0.779 3.221 26 H -0.187 1.187 27 H -0.237 1.237 28 H -0.194 1.194 29 C 0.016 3.984 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.253 0.747 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.259 0.741 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.030 0.970 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.287 -21.969 -13.256 27.644 hybrid contribution 0.679 0.525 1.158 1.441 sum -9.608 -21.444 -12.098 26.430 Atomic orbital electron populations 1.21828 0.93753 1.02443 1.02733 1.21314 0.96789 0.93762 1.02247 1.21406 0.89264 0.99946 1.02213 0.86963 1.21840 1.03571 1.00163 0.94503 1.21219 0.91267 0.82480 0.74473 1.90679 1.71259 1.32526 1.51331 1.45818 1.06618 1.10078 1.74515 1.21082 0.82507 0.92776 1.05811 1.20807 0.82669 0.91404 0.75415 1.90723 1.55898 1.47014 1.50386 1.45653 1.07301 1.07737 1.73781 1.21685 0.93570 0.81443 0.94852 1.22529 0.98899 0.98940 0.94348 1.22554 0.92649 1.02829 0.96690 1.22480 0.99535 0.99311 0.93868 1.22827 0.92970 1.00634 0.95058 0.85679 1.22027 0.90263 0.94063 0.95766 1.44721 1.02205 1.17672 1.69698 1.18508 1.01252 0.90513 1.25817 0.92932 1.25642 1.00572 0.97111 0.99909 1.69953 1.32835 1.12867 1.44796 0.85894 0.79534 0.78912 0.77760 1.18661 1.23724 1.19358 1.21932 0.90230 0.92437 0.93846 0.92125 0.92102 0.91344 0.92274 0.92696 0.92519 0.89346 0.91767 0.74652 0.86614 0.87584 0.74127 0.93533 0.91013 0.91021 0.88950 0.88702 0.93747 0.95576 0.92994 0.92780 0.96977 0.94831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 71.98 0.70 -0.77 16 2 C -0.10 -1.48 4.75 30.59 0.15 -1.34 16 3 C -0.11 -1.50 2.73 -11.54 -0.03 -1.53 16 4 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.14 -1.55 8.84 71.98 0.64 -0.92 16 6 C 0.52 10.32 7.15 87.66 0.63 10.95 16 7 O -0.58 -15.37 15.92 -3.02 -0.05 -15.42 16 8 N -0.72 -13.32 5.42 -466.78 -2.53 -15.85 16 9 C 0.11 1.84 6.15 85.63 0.53 2.36 16 10 C 0.51 11.60 7.25 87.66 0.64 12.23 16 11 O -0.56 -17.01 13.74 -3.03 -0.04 -17.05 16 12 N -0.69 -14.68 5.24 -413.77 -2.17 -16.84 16 13 C 0.17 5.10 0.94 5.64 0.01 5.10 16 14 C -0.11 -3.19 5.57 31.75 0.18 -3.01 16 15 C -0.11 -2.49 6.92 32.00 0.22 -2.27 16 16 C -0.11 -2.98 6.22 31.74 0.20 -2.78 16 17 C -0.10 -2.67 3.62 -9.44 -0.03 -2.70 16 18 H 0.13 2.44 7.71 -2.39 -0.02 2.42 16 19 C 0.10 4.16 4.07 86.50 0.35 4.51 16 20 N -0.62 -30.01 3.21 -691.43 -2.22 -32.23 16 21 C -0.23 -13.74 10.67 84.03 0.90 -12.85 16 22 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 23 C -0.04 -2.27 5.45 84.86 0.46 -1.81 16 24 N -0.96 -61.14 13.97 21.65 0.30 -60.84 16 25 Si 0.95 46.66 24.36 68.60 1.67 48.33 16 26 H -0.26 -11.69 6.36 99.48 0.63 -11.06 16 27 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 28 H -0.27 -12.72 6.49 99.48 0.65 -12.07 16 29 C 0.14 5.91 5.47 87.19 0.48 6.38 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.53 6.56 -2.39 -0.02 0.51 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.95 7.95 -2.39 -0.02 0.93 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.67 6.57 -2.38 -0.02 0.66 16 37 H 0.06 0.70 7.56 -2.39 -0.02 0.68 16 38 H 0.41 7.63 6.85 -92.71 -0.64 7.00 16 39 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 41 H 0.42 5.71 8.29 -92.71 -0.77 4.94 16 42 H 0.05 1.70 7.57 -2.39 -0.02 1.68 16 43 H 0.07 2.04 6.69 -2.39 -0.02 2.03 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 47 H 0.04 1.49 7.58 -2.38 -0.02 1.47 16 48 H 0.03 1.06 6.16 -2.38 -0.01 1.04 16 49 H 0.05 2.26 5.22 -2.38 -0.01 2.24 16 50 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 51 H 0.01 0.53 8.08 -2.39 -0.02 0.51 16 52 H 0.03 1.55 7.63 -2.39 -0.02 1.53 16 Total: -1.00 -78.07 395.51 0.34 -77.73 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.61 Total: 20.60 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.99 Total: 11.57 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -6.62 Total: -125.76 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.09 Total: -32.48 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.67 Total: 48.33 kcal Total: -78.07 0.34 -77.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111988711.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.719 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds