Wall clock time and date at job start Tue Mar 31 2020 19:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46596 * 2 1 4 4 C 1.50704 * 109.46898 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99573 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00142 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00177 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47549 * 180.02562 * 7 6 4 9 9 O 1.21282 * 120.00015 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00294 * 180.02562 * 8 7 6 11 11 C 1.48115 * 127.83997 * 359.96643 * 10 8 7 12 12 C 1.54332 * 104.69065 * 219.77196 * 11 10 8 13 13 H 1.08998 * 111.85076 * 214.54938 * 12 11 10 14 14 C 1.54160 * 108.86600 * 89.54592 * 12 11 10 15 15 C 1.54837 * 104.33343 * 271.20682 * 14 12 11 16 16 C 1.57145 * 102.91040 * 321.70558 * 15 14 12 17 17 C 1.54160 * 103.23165 * 38.20227 * 16 15 14 18 18 C 1.53005 * 111.81740 * 213.15150 * 17 16 15 19 19 N 1.46505 * 109.46904 * 298.61074 * 18 17 16 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 C 1.48116 * 127.84487 * 180.02562 * 10 8 7 29 29 H 1.09001 * 109.47279 * 59.99339 * 1 2 3 30 30 H 1.09000 * 109.46804 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46815 * 299.99673 * 1 2 3 32 32 H 1.09000 * 109.47009 * 240.00830 * 2 1 3 33 33 H 1.08996 * 109.47524 * 120.00251 * 2 1 3 34 34 H 1.09002 * 109.47272 * 60.00607 * 3 2 1 35 35 H 1.09001 * 109.47847 * 300.00313 * 3 2 1 36 36 H 0.97002 * 120.00556 * 0.02562 * 6 4 3 37 37 H 1.09002 * 109.47016 * 59.99745 * 7 6 4 38 38 H 1.09001 * 109.46740 * 300.00286 * 7 6 4 39 39 H 1.08993 * 110.39868 * 338.57767 * 11 10 8 40 40 H 1.09002 * 110.39348 * 100.86051 * 11 10 8 41 41 H 1.08999 * 110.46192 * 29.91385 * 14 12 11 42 42 H 1.08994 * 110.46177 * 152.36377 * 14 12 11 43 43 H 1.08994 * 110.76638 * 80.13764 * 15 14 12 44 44 H 1.09010 * 110.75988 * 203.33024 * 15 14 12 45 45 H 1.08993 * 111.52181 * 279.59202 * 16 15 14 46 46 H 1.09004 * 110.44659 * 156.29230 * 16 15 14 47 47 H 1.09003 * 109.46946 * 178.61833 * 18 17 16 48 48 H 1.08993 * 109.47679 * 58.61376 * 18 17 16 49 49 H 0.97000 * 119.99792 * 0.02562 * 19 18 17 50 50 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 51 51 H 1.09006 * 110.38979 * 21.43735 * 28 10 8 52 52 H 1.09003 * 110.48777 * 259.10493 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0015 6 7 4.2208 2.6098 -0.0002 7 6 5.6858 2.6099 -0.0014 8 6 6.1882 4.0307 0.0000 9 8 5.4001 4.9525 0.0013 10 7 7.5132 4.2770 -0.0013 11 6 8.6203 3.2930 -0.0034 12 6 9.6762 3.8899 0.9510 13 1 10.6914 3.6648 0.6245 14 6 9.3917 3.3933 2.3824 15 6 8.4112 4.4412 2.9639 16 6 8.9575 5.7945 2.3812 17 6 9.3934 5.4131 0.9525 18 6 10.6099 6.2203 0.4946 19 7 10.2719 7.6457 0.4778 20 6 11.2106 8.5674 0.0978 21 1 12.1999 8.2436 -0.1899 22 6 10.8886 9.9176 0.0763 23 7 11.7891 10.8030 -0.2941 24 14 9.1772 10.4777 0.5732 25 1 9.1494 10.7486 2.0330 26 1 8.8274 11.7166 -0.1670 27 1 8.1942 9.4129 0.2487 28 6 8.1929 5.5930 0.0003 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9565 -0.8899 36 1 3.7359 3.4499 0.0009 37 1 6.0485 2.0967 -0.8921 38 1 6.0499 2.0953 0.8879 39 1 8.2729 2.3295 0.3693 40 1 9.0310 3.1854 -1.0073 41 1 8.9260 2.4081 2.3585 42 1 10.3119 3.3647 2.9658 43 1 7.3949 4.2534 2.6177 44 1 8.4519 4.4457 4.0532 45 1 9.8089 6.1618 2.9541 46 1 8.1659 6.5432 2.3509 47 1 10.8997 5.9038 -0.5074 48 1 11.4381 6.0514 1.1827 49 1 9.3832 7.9365 0.7358 50 1 11.5643 11.7465 -0.3088 51 1 7.5226 6.3662 0.3760 52 1 8.5381 5.8453 -1.0024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112277918.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:46 Heat of formation + Delta-G solvation = -69.534335 kcal Electronic energy + Delta-G solvation = -30134.555563 eV Core-core repulsion = 26133.608210 eV Total energy + Delta-G solvation = -4000.947353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99022 -40.06659 -38.68823 -35.05737 -34.96523 -34.57833 -34.25559 -31.86465 -30.25153 -30.11652 -29.14515 -27.39217 -25.59628 -25.31658 -23.67590 -22.21624 -21.93543 -20.69086 -20.27830 -19.69996 -18.96163 -17.95780 -17.43742 -16.76132 -16.67683 -16.27152 -16.04638 -15.34408 -15.17370 -14.61219 -14.48474 -14.29720 -14.07769 -13.84200 -13.68565 -13.44737 -13.41208 -13.25371 -12.99555 -12.77122 -12.58755 -12.32479 -12.25795 -12.15861 -11.76980 -11.65368 -11.57666 -11.13279 -10.98969 -10.92628 -10.87635 -10.76860 -10.59939 -10.53819 -10.38401 -10.23579 -10.14036 -10.03139 -9.60397 -9.50977 -8.93483 -8.77564 -7.26164 -5.78979 -3.14708 2.27785 2.37477 2.44387 3.07166 3.36704 3.40044 3.45123 4.07526 4.29507 4.37446 4.49703 4.50506 4.56266 4.57657 4.60247 4.94062 4.96253 5.06073 5.08392 5.10645 5.12919 5.17221 5.22625 5.25696 5.35187 5.41342 5.44223 5.51066 5.57651 5.61095 5.64371 5.65653 5.74363 5.75811 5.80231 5.90083 5.93530 5.98520 6.01713 6.06622 6.11304 6.29914 6.32248 6.42959 6.58919 6.63196 7.14395 7.35872 7.83342 7.89588 7.96289 8.39823 9.18588 9.91080 10.10333 11.39287 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.002457 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.350611 B =11391.785692 C =12304.288236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.514 3.486 5 O -0.543 6.543 6 N -0.720 5.720 7 C 0.105 3.895 8 C 0.527 3.473 9 O -0.541 6.541 10 N -0.612 5.612 11 C 0.101 3.899 12 C -0.096 4.096 13 H 0.100 0.900 14 C -0.114 4.114 15 C -0.122 4.122 16 C -0.108 4.108 17 C -0.080 4.080 18 C 0.177 3.823 19 N -0.754 5.754 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.933 5.933 24 Si 0.881 3.119 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.118 3.882 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.413 0.587 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.029 0.971 48 H 0.034 0.966 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.082 0.918 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.287 -22.775 2.905 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.180 4.180 4 C 0.301 3.699 5 O -0.421 6.421 6 N -0.376 5.376 7 C -0.022 4.022 8 C 0.315 3.685 9 O -0.419 6.419 10 N -0.345 5.345 11 C -0.021 4.021 12 C -0.116 4.116 13 H 0.118 0.882 14 C -0.152 4.152 15 C -0.160 4.160 16 C -0.145 4.145 17 C -0.081 4.081 18 C 0.050 3.950 19 N -0.400 5.400 20 C -0.374 4.374 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.581 5.581 24 Si 0.711 3.289 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.004 4.004 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.251 0.749 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.047 0.953 48 H 0.052 0.948 49 H 0.194 0.806 50 H 0.070 0.930 51 H 0.101 0.899 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.171 -22.944 2.808 28.210 hybrid contribution -1.252 1.107 0.256 1.690 sum -17.423 -21.837 3.064 28.104 Atomic orbital electron populations 1.21801 0.95387 1.02024 1.01888 1.21285 0.95344 0.94491 1.03595 1.21721 0.91098 1.00406 1.04766 1.20810 0.90558 0.83044 0.75445 1.90709 1.70557 1.31276 1.49512 1.45810 1.05965 1.10049 1.75767 1.21004 0.82242 0.94345 1.04650 1.19998 0.81009 0.90868 0.76605 1.90718 1.54114 1.46066 1.50961 1.48862 1.04111 1.09832 1.71720 1.22642 0.86927 0.92227 1.00347 1.22693 0.99043 0.94410 0.95415 0.88196 1.22370 0.99613 0.98089 0.95107 1.22840 0.98481 0.95120 0.99557 1.22796 1.00788 0.96440 0.94512 1.22336 0.95685 0.94307 0.95806 1.20586 0.92499 0.83951 0.97985 1.42689 1.13034 1.01488 1.82757 1.19028 0.94158 0.86724 1.37489 0.89184 1.24655 0.97170 0.95753 1.01389 1.69694 1.33328 1.01150 1.53920 0.86608 0.85673 0.78195 0.78432 1.21043 1.21697 1.20284 1.22542 0.92933 0.84475 1.00434 0.92619 0.92349 0.92619 0.91198 0.91203 0.88665 0.88660 0.74942 0.88480 0.88511 0.90130 0.90425 0.91815 0.91133 0.92213 0.91924 0.90385 0.91793 0.95277 0.94840 0.80604 0.93048 0.89914 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.11 -0.75 5.22 -26.73 -0.14 -0.89 16 3 C -0.14 -0.92 5.70 -27.88 -0.16 -1.07 16 4 C 0.51 5.05 7.83 -10.99 -0.09 4.97 16 5 O -0.54 -7.11 15.98 5.55 0.09 -7.02 16 6 N -0.72 -6.91 5.53 -61.47 -0.34 -7.25 16 7 C 0.10 1.03 5.13 -5.19 -0.03 1.01 16 8 C 0.53 6.58 7.94 -10.99 -0.09 6.50 16 9 O -0.54 -8.56 15.93 5.56 0.09 -8.47 16 10 N -0.61 -7.34 2.53 -169.45 -0.43 -7.76 16 11 C 0.10 0.93 6.34 -2.46 -0.02 0.91 16 12 C -0.10 -0.98 3.62 -88.30 -0.32 -1.30 16 13 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 14 C -0.11 -1.07 6.28 -25.16 -0.16 -1.23 16 15 C -0.12 -1.38 6.57 -23.51 -0.15 -1.53 16 16 C -0.11 -1.51 5.50 -23.87 -0.13 -1.64 16 17 C -0.08 -1.10 0.67 -152.21 -0.10 -1.21 16 18 C 0.18 3.12 5.10 -4.04 -0.02 3.10 16 19 N -0.75 -17.04 5.03 -59.90 -0.30 -17.34 16 20 C -0.24 -6.73 10.47 -15.06 -0.16 -6.89 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 23 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16 24 Si 0.88 22.14 27.74 -169.99 -4.72 17.43 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.28 -6.60 6.51 56.52 0.37 -6.23 16 28 C 0.12 1.74 5.51 -2.48 -0.01 1.72 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.41 3.79 7.44 -40.82 -0.30 3.49 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.88 7.95 -51.93 -0.41 0.47 16 39 H 0.08 0.57 6.60 -51.93 -0.34 0.23 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.71 7.66 -51.93 -0.40 0.32 16 44 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 45 H 0.08 1.16 7.96 -51.93 -0.41 0.74 16 46 H 0.06 0.99 7.42 -51.93 -0.39 0.60 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.36 8.13 4.92 -40.82 -0.20 7.93 16 50 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 51 H 0.08 1.41 7.15 -51.93 -0.37 1.04 16 52 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -34.07 407.24 -9.11 -43.19 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -9.12 Total: 7.30 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.30 Total: 2.10 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.29 Total: -60.66 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.18 Total: -15.49 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.72 Total: 17.43 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.07 -9.11 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112277918.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.348 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds