Wall clock time and date at job start Tue Mar 31 2020 20:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47279 * 2 1 4 4 H 1.09001 * 109.47584 * 305.00112 * 3 2 1 5 5 N 1.46507 * 109.47031 * 64.99658 * 3 2 1 6 6 C 1.34766 * 120.00262 * 275.00613 * 5 3 2 7 7 C 1.50698 * 120.00232 * 179.97438 * 6 5 3 8 8 O 1.21286 * 120.00237 * 359.97438 * 6 5 3 9 9 C 1.50697 * 109.47737 * 184.99836 * 3 2 1 10 10 O 1.21283 * 120.00521 * 239.72883 * 9 3 2 11 11 N 1.34784 * 119.99774 * 59.99989 * 9 3 2 12 12 C 1.48113 * 127.84054 * 359.40898 * 11 9 3 13 13 C 1.54730 * 104.49357 * 140.20577 * 12 11 9 14 14 H 1.09007 * 112.03325 * 262.68697 * 13 12 11 15 15 C 1.54155 * 108.70914 * 137.67101 * 13 12 11 16 16 C 1.54842 * 104.32488 * 271.37301 * 15 13 12 17 17 C 1.54845 * 102.73221 * 321.80419 * 16 15 13 18 18 C 1.54158 * 104.32825 * 38.18485 * 17 16 15 19 19 C 1.52998 * 112.55026 * 213.36322 * 18 17 16 20 20 N 1.46497 * 109.47489 * 298.08195 * 19 18 17 21 21 C 1.36940 * 120.00230 * 180.02562 * 20 19 18 22 22 H 1.07994 * 119.99803 * 0.02562 * 21 20 19 23 23 C 1.38818 * 119.99643 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00252 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99322 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47343 * 90.00031 * 25 23 21 27 27 H 1.48506 * 109.46741 * 209.99989 * 25 23 21 28 28 H 1.48504 * 109.47574 * 329.99628 * 25 23 21 29 29 C 1.48110 * 127.84232 * 179.72627 * 11 9 3 30 30 H 1.08992 * 109.46998 * 299.99654 * 1 2 3 31 31 H 1.09000 * 109.47171 * 59.99944 * 1 2 3 32 32 H 1.09001 * 109.46922 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47572 * 240.00378 * 2 1 3 34 34 H 1.09000 * 109.47171 * 120.00056 * 2 1 3 35 35 H 0.97004 * 119.99451 * 95.00030 * 5 3 2 36 36 H 1.09002 * 109.46967 * 59.99584 * 7 6 5 37 37 H 1.08998 * 109.47622 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.47114 * 299.99852 * 7 6 5 39 39 H 1.09007 * 110.39812 * 259.05539 * 12 11 9 40 40 H 1.09006 * 110.39641 * 21.44664 * 12 11 9 41 41 H 1.09005 * 110.46275 * 30.08350 * 15 13 12 42 42 H 1.08999 * 110.46558 * 152.66239 * 15 13 12 43 43 H 1.09001 * 110.76157 * 80.11531 * 16 15 13 44 44 H 1.09003 * 110.76445 * 203.30778 * 16 15 13 45 45 H 1.09006 * 110.45833 * 279.47565 * 17 16 15 46 46 H 1.09003 * 110.46082 * 156.89913 * 17 16 15 47 47 H 1.09000 * 109.47174 * 58.08597 * 19 18 17 48 48 H 1.08998 * 109.47180 * 178.08241 * 19 18 17 49 49 H 0.97003 * 119.99726 * 0.02562 * 20 19 18 50 50 H 0.97004 * 119.99566 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.39779 * 338.54535 * 29 11 9 52 52 H 1.09010 * 110.39410 * 100.82161 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6643 1.3670 7 6 0.0362 3.3376 2.6549 8 8 -0.3394 2.6326 0.4341 9 6 3.5419 1.4444 -0.1238 10 8 4.2214 1.9480 0.7454 11 7 4.1298 0.8912 -1.2032 12 6 3.4752 0.2288 -2.3549 13 6 4.2876 0.6988 -3.5850 14 1 3.8136 1.5399 -4.0911 15 6 4.5089 -0.5058 -4.5211 16 6 5.8215 -1.1504 -4.0122 17 6 6.6832 0.0804 -3.6374 18 6 5.6801 1.0744 -3.0193 19 6 6.0418 2.5318 -3.3127 20 7 7.3463 2.8398 -2.7214 21 6 7.8797 4.0939 -2.8551 22 1 7.3385 4.8560 -3.3960 23 6 9.1160 4.3855 -2.2952 24 7 9.7757 3.4565 -1.6364 25 14 9.8433 6.0965 -2.4769 26 1 9.4059 6.9438 -1.3387 27 1 11.3256 6.0059 -2.4856 28 1 9.3769 6.6999 -3.7512 29 6 5.5773 0.8020 -1.5037 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2719 2.1231 1.9978 36 1 0.7276 4.1528 2.8679 37 1 -0.9746 3.7343 2.5596 38 1 0.0672 2.6128 3.4685 39 1 3.5305 -0.8549 -2.2516 40 1 2.4370 0.5507 -2.4385 41 1 3.6812 -1.2102 -4.4378 42 1 4.6234 -0.1712 -5.5521 43 1 5.6329 -1.7711 -3.1363 44 1 6.2973 -1.7328 -4.8012 45 1 7.1441 0.5082 -4.5278 46 1 7.4448 -0.1956 -2.9081 47 1 6.0862 2.6851 -4.3909 48 1 5.2844 3.1876 -2.8834 49 1 7.8321 2.1553 -2.2352 50 1 10.6398 3.6603 -1.2455 51 1 6.1288 1.5573 -0.9438 52 1 5.9535 -0.1938 -1.2686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112533928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:40 Heat of formation + Delta-G solvation = -64.522076 kcal Electronic energy + Delta-G solvation = -31219.593394 eV Core-core repulsion = 27218.863389 eV Total energy + Delta-G solvation = -4000.730005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93171 -39.98529 -38.51197 -35.50837 -34.82812 -34.37948 -32.75823 -31.63918 -29.95181 -29.83121 -29.22302 -27.37962 -25.60312 -25.17995 -23.78848 -22.26815 -21.92738 -20.64370 -20.14414 -19.63054 -18.56944 -17.63163 -17.05641 -16.81866 -16.13736 -15.94658 -15.70026 -15.18328 -15.10191 -14.51842 -14.36162 -14.14651 -13.77937 -13.73650 -13.42893 -13.16991 -13.00195 -12.89117 -12.81000 -12.64413 -12.60990 -12.26200 -12.13732 -11.85192 -11.74504 -11.58286 -11.19190 -11.09924 -10.90706 -10.82247 -10.79239 -10.61451 -10.48190 -10.36335 -10.27926 -10.05209 -9.94540 -9.78936 -9.61751 -9.21985 -8.84508 -8.62964 -6.88496 -5.73321 -3.01378 2.42407 2.60637 2.69483 3.25779 3.46376 3.51433 3.52616 4.21304 4.42300 4.58561 4.62515 4.64083 4.73684 4.74714 4.83576 5.03861 5.11589 5.14713 5.16172 5.25538 5.28090 5.30254 5.35559 5.51799 5.54132 5.57683 5.60086 5.61560 5.63997 5.72739 5.75526 5.86803 5.91575 5.97500 6.02382 6.11464 6.16023 6.18565 6.21166 6.27101 6.27890 6.48083 6.52382 6.59854 6.77065 6.84125 7.33508 7.58772 7.73279 8.03015 8.13926 8.45456 9.57013 10.13872 10.48819 11.49581 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010289 B = 0.003607 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.689612 B = 7760.979622 C = 9772.350498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.132 3.868 4 H 0.112 0.888 5 N -0.712 5.712 6 C 0.514 3.486 7 C -0.174 4.174 8 O -0.544 6.544 9 C 0.528 3.472 10 O -0.531 6.531 11 N -0.613 5.613 12 C 0.102 3.898 13 C -0.099 4.099 14 H 0.090 0.910 15 C -0.114 4.114 16 C -0.126 4.126 17 C -0.105 4.105 18 C -0.073 4.073 19 C 0.173 3.827 20 N -0.728 5.728 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.115 3.885 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.022 0.978 48 H 0.017 0.983 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.099 0.901 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 -11.875 1.987 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.023 3.977 4 H 0.130 0.870 5 N -0.366 5.366 6 C 0.301 3.699 7 C -0.233 4.233 8 O -0.422 6.422 9 C 0.316 3.684 10 O -0.407 6.407 11 N -0.346 5.346 12 C -0.021 4.021 13 C -0.119 4.119 14 H 0.108 0.892 15 C -0.152 4.152 16 C -0.163 4.163 17 C -0.143 4.143 18 C -0.075 4.075 19 C 0.046 3.954 20 N -0.373 5.373 21 C -0.369 4.369 22 H 0.086 0.914 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.007 4.007 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.248 0.752 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.040 0.960 48 H 0.035 0.965 49 H 0.218 0.782 50 H 0.064 0.936 51 H 0.117 0.883 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.043 -11.388 1.862 22.266 hybrid contribution 1.018 0.800 0.438 1.367 sum -18.025 -10.588 2.301 21.031 Atomic orbital electron populations 1.21789 0.93992 1.00868 1.03263 1.22035 0.97703 0.94190 1.03372 1.20771 0.91574 0.95530 0.89824 0.86993 1.45809 1.17126 1.57594 1.16075 1.20758 0.81031 0.77727 0.90362 1.21911 1.04337 1.01943 0.95142 1.90724 1.51317 1.59069 1.41090 1.20095 0.89477 0.77814 0.81056 1.90749 1.65066 1.45076 1.39781 1.48844 1.08993 1.56769 1.20034 1.22782 0.97137 0.97157 0.85062 1.22814 0.95719 0.98322 0.95053 0.89215 1.22339 0.97716 0.96057 0.99041 1.22521 0.95798 0.97567 1.00440 1.22305 0.96902 0.93794 1.01309 1.22261 0.93957 0.97366 0.93872 1.20543 0.89030 0.89898 0.95947 1.42315 1.17640 1.12118 1.65193 1.19197 1.00357 0.88858 1.28536 0.91351 1.24704 0.97592 0.97711 1.00794 1.69650 1.15275 1.32377 1.40808 0.86212 0.78248 0.84238 0.77628 1.21768 1.21794 1.20822 1.22618 0.80305 1.02201 0.95594 0.92402 0.91904 0.93151 0.90078 0.91289 0.75231 0.89127 0.88886 0.89388 0.90597 0.90373 0.91638 0.91214 0.91882 0.91594 0.90677 0.91116 0.96037 0.96540 0.78192 0.93563 0.88279 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.51 37.16 0.32 -1.05 16 2 C -0.13 -1.29 5.37 -26.73 -0.14 -1.43 16 3 C 0.13 1.58 2.00 -69.08 -0.14 1.44 16 4 H 0.11 1.43 7.40 -51.93 -0.38 1.05 16 5 N -0.71 -8.03 4.90 -54.93 -0.27 -8.30 16 6 C 0.51 5.71 6.51 -10.99 -0.07 5.64 16 7 C -0.17 -1.25 10.32 36.00 0.37 -0.88 16 8 O -0.54 -7.70 14.23 5.55 0.08 -7.62 16 9 C 0.53 8.01 7.34 -10.98 -0.08 7.93 16 10 O -0.53 -10.13 16.10 5.56 0.09 -10.04 16 11 N -0.61 -8.60 3.30 -169.18 -0.56 -9.16 16 12 C 0.10 1.05 4.60 -2.24 -0.01 1.04 16 13 C -0.10 -1.15 3.61 -88.09 -0.32 -1.47 16 14 H 0.09 1.06 7.88 -51.92 -0.41 0.65 16 15 C -0.11 -1.08 6.10 -25.16 -0.15 -1.23 16 16 C -0.13 -1.32 6.82 -24.79 -0.17 -1.48 16 17 C -0.11 -1.49 5.23 -25.15 -0.13 -1.62 16 18 C -0.07 -1.12 0.63 -152.19 -0.10 -1.21 16 19 C 0.17 3.48 5.20 -4.04 -0.02 3.46 16 20 N -0.73 -18.32 4.93 -59.91 -0.30 -18.62 16 21 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 25 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 C 0.11 1.85 5.75 -2.46 -0.01 1.84 16 30 H 0.06 0.62 5.64 -51.93 -0.29 0.33 16 31 H 0.06 0.66 7.85 -51.93 -0.41 0.26 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.68 5.24 -51.93 -0.27 0.41 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.41 4.41 7.79 -40.82 -0.32 4.09 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.66 7.46 -51.93 -0.39 0.27 16 40 H 0.08 0.69 6.59 -51.93 -0.34 0.35 16 41 H 0.06 0.49 7.75 -51.93 -0.40 0.09 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.17 7.99 -51.93 -0.41 0.76 16 46 H 0.07 1.08 7.74 -51.93 -0.40 0.68 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.38 10.07 6.86 -40.82 -0.28 9.79 16 50 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.10 2.07 6.87 -51.93 -0.36 1.71 16 52 H 0.07 1.01 7.62 -51.92 -0.40 0.61 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -34.48 399.08 -8.98 -43.46 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -8.84 Total: 10.48 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.91 Total: 3.62 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -0.40 Total: -63.75 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.17 Total: -17.66 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.48 -8.98 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112533928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.062 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds