Wall clock time and date at job start Tue Mar 31 2020 19:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46969 * 2 1 4 4 H 1.09002 * 110.43542 * 305.70425 * 3 2 1 5 5 C 1.54894 * 110.48128 * 68.24577 * 3 2 1 6 6 C 1.55238 * 102.58338 * 156.67574 * 5 3 2 7 7 C 1.54266 * 104.23333 * 322.08174 * 6 5 3 8 8 C 1.53869 * 106.59800 * 23.61579 * 7 6 5 9 9 H 1.09001 * 110.02983 * 240.71432 * 8 7 6 10 10 C 1.50699 * 110.07480 * 119.30495 * 8 7 6 11 11 O 1.21280 * 119.99897 * 242.80370 * 10 8 7 12 12 N 1.34779 * 119.99649 * 62.80961 * 10 8 7 13 13 C 1.47075 * 120.88497 * 359.72090 * 12 10 8 14 14 C 1.53699 * 108.27925 * 128.75671 * 13 12 10 15 15 N 1.46894 * 109.25422 * 54.07973 * 14 13 12 16 16 C 1.46904 * 110.99801 * 172.60954 * 15 14 13 17 17 C 1.50698 * 109.46967 * 294.30222 * 16 15 14 18 18 O 1.21298 * 120.00038 * 359.97438 * 17 16 15 19 19 N 1.34784 * 120.00090 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00038 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99906 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99647 * 180.02562 * 20 19 17 23 23 N 1.31402 * 120.00224 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99533 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47341 * 59.99855 * 24 22 20 26 26 H 1.48503 * 109.46732 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47030 * 299.99521 * 24 22 20 28 28 C 1.46900 * 111.27171 * 296.75767 * 15 14 13 29 29 C 1.47084 * 120.87607 * 179.97438 * 12 10 8 30 30 H 1.08998 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47367 * 299.99458 * 1 2 3 32 32 H 1.09001 * 109.47428 * 59.99732 * 1 2 3 33 33 H 1.09002 * 109.47103 * 240.01005 * 2 1 3 34 34 H 1.08991 * 109.47392 * 120.00225 * 2 1 3 35 35 H 1.08996 * 110.75388 * 275.05927 * 5 3 2 36 36 H 1.08993 * 110.76071 * 38.44153 * 5 3 2 37 37 H 1.09005 * 110.46917 * 203.39204 * 6 5 3 38 38 H 1.09007 * 110.58541 * 80.83124 * 6 5 3 39 39 H 1.08999 * 110.03060 * 264.32313 * 7 6 5 40 40 H 1.09003 * 110.02805 * 142.89578 * 7 6 5 41 41 H 1.08998 * 109.62547 * 248.52557 * 13 12 10 42 42 H 1.09003 * 109.62690 * 9.09998 * 13 12 10 43 43 H 1.09000 * 109.64392 * 294.07738 * 14 13 12 44 44 H 1.08997 * 109.44002 * 173.95917 * 14 13 12 45 45 H 1.08994 * 109.47363 * 54.30053 * 16 15 14 46 46 H 1.08999 * 109.47136 * 174.30440 * 16 15 14 47 47 H 0.96997 * 119.99684 * 0.02562 * 19 17 16 48 48 H 0.97006 * 120.00195 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.49008 * 303.14341 * 28 15 14 50 50 H 1.09001 * 109.49206 * 183.06804 * 28 15 14 51 51 H 1.08998 * 109.62952 * 350.89586 * 29 12 10 52 52 H 1.09000 * 109.62856 * 111.47991 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 2.0001 -0.8294 5 6 1.7135 2.1328 1.3477 6 6 2.7721 3.2665 1.4121 7 6 4.0458 2.6303 0.8182 8 6 3.5802 1.4707 -0.0797 9 1 3.9902 0.5287 0.2845 10 6 4.0193 1.7090 -1.5015 11 8 3.1913 1.8449 -2.3771 12 7 5.3322 1.7708 -1.7999 13 6 6.3527 1.6145 -0.7524 14 6 7.3572 0.5465 -1.2134 15 7 7.8780 0.9108 -2.5377 16 6 8.9687 0.0126 -2.9398 17 6 10.1449 0.2068 -2.0180 18 8 10.0811 1.0143 -1.1151 19 7 11.2679 -0.5169 -2.1967 20 6 12.3377 -0.3407 -1.3577 21 1 12.2806 0.3778 -0.5533 22 6 13.4955 -1.0863 -1.5423 23 7 13.5649 -1.9608 -2.5207 24 14 14.9531 -0.8467 -0.3987 25 1 14.5450 -1.1568 0.9951 26 1 16.0555 -1.7549 -0.8049 27 1 15.4172 0.5617 -0.4768 28 6 6.8091 0.9249 -3.5453 29 6 5.7823 2.0019 -3.1810 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 0.7040 2.5437 1.3367 36 1 1.8401 1.4383 2.1781 37 1 2.9432 3.5699 2.4450 38 1 2.4565 4.1201 0.8121 39 1 4.6817 2.2512 1.6182 40 1 4.5892 3.3663 0.2257 41 1 6.8671 2.5630 -0.5980 42 1 5.8785 1.2967 0.1762 43 1 6.8610 -0.4223 -1.2716 44 1 8.1805 0.4914 -0.5013 45 1 8.6282 -1.0211 -2.8816 46 1 9.2677 0.2396 -3.9631 47 1 11.3190 -1.1624 -2.9189 48 1 14.3730 -2.4816 -2.6494 49 1 6.3207 -0.0492 -3.5711 50 1 7.2350 1.1446 -4.5243 51 1 4.9309 1.9402 -3.8587 52 1 6.2430 2.9869 -3.2560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113307771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:30 Heat of formation + Delta-G solvation = -78.974109 kcal Electronic energy + Delta-G solvation = -30231.163894 eV Core-core repulsion = 26229.807202 eV Total energy + Delta-G solvation = -4001.356692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.74491 -38.98949 -37.93445 -37.02052 -34.61220 -33.84881 -33.32203 -31.34520 -31.27765 -29.65470 -28.51482 -27.82010 -25.74970 -24.04845 -23.70889 -23.06359 -21.80348 -20.71334 -19.98687 -19.29468 -18.85472 -17.90693 -17.03271 -16.42941 -15.97630 -15.86638 -15.09385 -15.00624 -14.88285 -14.72868 -14.61386 -14.51452 -14.00504 -13.84508 -13.65856 -13.49430 -13.37715 -13.28278 -12.83438 -12.47400 -12.20897 -11.99911 -11.88967 -11.63181 -11.56592 -11.48799 -11.33425 -11.24780 -11.14278 -11.08138 -10.96181 -10.86586 -10.77727 -10.72034 -10.60040 -10.46883 -10.24745 -9.69974 -9.50107 -8.85325 -8.39134 -8.02015 -7.91854 -6.44967 -3.86035 2.58493 2.91774 3.17290 3.23625 3.27495 3.84955 3.92059 4.16981 4.20836 4.30459 4.36120 4.71383 4.84239 4.90416 4.99221 5.01301 5.07563 5.09391 5.14492 5.20620 5.25728 5.29710 5.33838 5.36290 5.37555 5.43315 5.48270 5.52104 5.61051 5.64895 5.71747 5.73259 5.78384 5.82985 5.85669 5.87320 5.89656 5.93550 6.01165 6.08108 6.12359 6.18397 6.22554 6.28648 6.50089 7.12583 7.28647 7.41348 7.51627 8.02280 8.12909 8.57628 9.14209 9.50449 10.01641 10.72553 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.002218 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.417054 B =12621.880144 C =13098.137902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.078 4.078 4 H 0.093 0.907 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.110 4.110 9 H 0.098 0.902 10 C 0.521 3.479 11 O -0.547 6.547 12 N -0.611 5.611 13 C 0.114 3.886 14 C 0.038 3.962 15 N -0.514 5.514 16 C 0.046 3.954 17 C 0.443 3.557 18 O -0.579 6.579 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.041 3.959 29 C 0.118 3.882 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.115 0.885 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.034 0.966 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.751 4.429 3.815 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.097 4.097 4 H 0.111 0.889 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.155 4.155 8 C -0.132 4.132 9 H 0.116 0.884 10 C 0.310 3.690 11 O -0.425 6.425 12 N -0.345 5.345 13 C -0.009 4.009 14 C -0.090 4.090 15 N -0.239 5.239 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.463 6.463 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.088 4.088 29 C -0.004 4.004 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.045 0.955 44 H 0.133 0.867 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.052 0.948 50 H 0.105 0.895 51 H 0.110 0.890 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.861 5.380 3.925 22.853 hybrid contribution 0.791 -1.299 -0.117 1.526 sum -21.070 4.081 3.808 21.797 Atomic orbital electron populations 1.21747 0.95748 1.01384 1.01828 1.21539 0.96084 0.95915 1.01766 1.21984 0.92266 0.96770 0.98653 0.88862 1.22640 0.98738 0.97259 0.96991 1.22407 0.94845 0.98095 1.00810 1.22217 0.98229 0.96553 0.98482 1.22020 0.97847 1.00824 0.92480 0.88435 1.20611 0.81671 0.75779 0.90953 1.90642 1.51593 1.50807 1.49506 1.48244 1.05573 1.71216 1.09432 1.22083 0.88428 1.00539 0.89848 1.22740 0.98597 0.94922 0.92764 1.61503 1.08401 1.52207 1.01787 1.21852 0.92064 0.94652 0.99915 1.19708 0.84398 0.85161 0.87888 1.90473 1.82495 1.38203 1.35165 1.41873 1.12219 1.35948 1.29872 1.19640 0.91170 1.21406 1.10704 0.87926 1.25268 0.99182 0.95980 0.97494 1.69600 1.29521 1.24412 1.30705 0.85919 0.80049 0.78275 0.79982 1.19913 1.20989 1.19863 1.22497 0.92273 0.97761 0.96271 1.21671 0.97174 0.98839 0.82748 0.92989 0.92717 0.92675 0.92043 0.92115 0.91393 0.91321 0.91369 0.91575 0.90579 0.91155 0.90026 0.89523 0.95537 0.86663 0.93481 0.89196 0.77481 0.91784 0.94790 0.89549 0.88960 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.77 37.15 0.36 -0.79 16 2 C -0.12 -1.01 5.28 -26.73 -0.14 -1.15 16 3 C -0.08 -0.73 2.19 -88.96 -0.19 -0.93 16 4 H 0.09 1.08 6.88 -51.93 -0.36 0.73 16 5 C -0.12 -0.89 5.62 -24.55 -0.14 -1.03 16 6 C -0.12 -0.96 6.84 -24.88 -0.17 -1.13 16 7 C -0.12 -1.01 4.86 -25.62 -0.12 -1.13 16 8 C -0.11 -1.10 1.98 -90.66 -0.18 -1.28 16 9 H 0.10 0.90 7.31 -51.93 -0.38 0.52 16 10 C 0.52 6.74 6.86 -10.98 -0.08 6.66 16 11 O -0.55 -8.65 14.86 5.56 0.08 -8.57 16 12 N -0.61 -7.76 2.98 -172.21 -0.51 -8.27 16 13 C 0.11 1.41 5.53 -3.37 -0.02 1.39 16 14 C 0.04 0.58 5.27 -3.46 -0.02 0.56 16 15 N -0.51 -8.17 4.37 -235.50 -1.03 -9.20 16 16 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 17 C 0.44 10.00 7.44 -10.98 -0.08 9.92 16 18 O -0.58 -14.72 13.91 5.54 0.08 -14.64 16 19 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 20 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 21 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 24 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 C 0.04 0.53 5.62 -3.72 -0.02 0.51 16 29 C 0.12 1.49 6.59 -3.62 -0.02 1.47 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.37 7.46 -51.93 -0.39 -0.01 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 35 H 0.07 0.47 8.02 -51.93 -0.42 0.06 16 36 H 0.07 0.47 8.00 -51.93 -0.42 0.06 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.57 7.74 -51.93 -0.40 0.17 16 40 H 0.07 0.68 7.18 -51.93 -0.37 0.30 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 0.88 4.96 -51.93 -0.26 0.62 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.12 2.08 5.77 -51.93 -0.30 1.78 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.09 1.40 7.97 -51.93 -0.41 0.99 16 47 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.99 7.99 -51.93 -0.41 0.58 16 51 H 0.09 1.17 7.06 -51.93 -0.37 0.80 16 52 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -31.03 398.99 -9.78 -40.81 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.96 Total: 9.47 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.09 Total: 6.06 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.88 Total: -54.76 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.16 Total: -23.22 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.03 -9.78 -40.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113307771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.166 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds