Wall clock time and date at job start Tue Mar 31 2020 19:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47240 * 2 1 4 4 H 1.09007 * 110.81721 * 51.66737 * 3 2 1 5 5 C 1.54889 * 110.75592 * 288.32989 * 3 2 1 6 6 C 1.54276 * 104.19245 * 203.74141 * 5 3 2 7 7 C 1.53871 * 106.59717 * 23.61167 * 6 5 3 8 8 C 1.54260 * 106.60258 * 359.97438 * 7 6 5 9 9 H 1.08993 * 110.49069 * 95.19775 * 8 7 6 10 10 C 1.50698 * 110.48768 * 217.71582 * 8 7 6 11 11 O 1.21279 * 120.00272 * 97.62397 * 10 8 7 12 12 N 1.34781 * 120.00035 * 277.62298 * 10 8 7 13 13 C 1.47078 * 120.87616 * 355.03229 * 12 10 8 14 14 C 1.53245 * 108.52249 * 231.16036 * 13 12 10 15 15 N 1.46895 * 109.33973 * 306.17331 * 14 13 12 16 16 C 1.46898 * 110.99690 * 187.25065 * 15 14 13 17 17 C 1.50708 * 109.47040 * 170.00206 * 16 15 14 18 18 O 1.21296 * 119.99478 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00217 * 180.02562 * 17 16 15 20 20 C 1.37104 * 120.00106 * 179.72714 * 19 17 16 21 21 H 1.07996 * 119.99523 * 0.26830 * 20 19 17 22 22 C 1.38948 * 120.00141 * 180.27490 * 20 19 17 23 23 N 1.31412 * 119.99948 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99963 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46863 * 90.00121 * 24 22 20 26 26 H 1.48502 * 109.47187 * 209.99725 * 24 22 20 27 27 H 1.48493 * 109.47326 * 329.99778 * 24 22 20 28 28 C 1.46903 * 111.26746 * 63.10439 * 15 14 13 29 29 C 1.47076 * 120.88435 * 175.01320 * 12 10 8 30 30 H 1.09002 * 109.46872 * 300.00275 * 1 2 3 31 31 H 1.09007 * 109.46802 * 59.99545 * 1 2 3 32 32 H 1.08995 * 109.47112 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47142 * 240.00185 * 2 1 3 34 34 H 1.08993 * 109.46978 * 120.00390 * 2 1 3 35 35 H 1.09001 * 110.48429 * 85.06918 * 5 3 2 36 36 H 1.08994 * 110.48719 * 322.41831 * 5 3 2 37 37 H 1.09003 * 110.02940 * 264.32697 * 6 5 3 38 38 H 1.08996 * 110.02881 * 142.89717 * 6 5 3 39 39 H 1.09006 * 110.03075 * 240.71126 * 7 6 5 40 40 H 1.08995 * 110.07373 * 119.30983 * 7 6 5 41 41 H 1.09000 * 109.63007 * 111.45354 * 13 12 10 42 42 H 1.09000 * 109.63109 * 350.87401 * 13 12 10 43 43 H 1.09001 * 109.49128 * 186.20886 * 14 13 12 44 44 H 1.08994 * 109.50919 * 66.14598 * 14 13 12 45 45 H 1.08994 * 109.47542 * 50.00558 * 16 15 14 46 46 H 1.09004 * 109.47225 * 289.99827 * 16 15 14 47 47 H 0.96997 * 119.99712 * 359.97438 * 19 17 16 48 48 H 0.96996 * 120.00141 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.49479 * 56.85495 * 28 15 14 50 50 H 1.09003 * 109.49331 * 176.93769 * 28 15 14 51 51 H 1.09007 * 109.62390 * 248.54650 * 29 12 10 52 52 H 1.08992 * 109.62563 * 9.12283 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5734 2.0184 0.7993 5 6 1.7936 2.1118 -1.3749 6 6 2.8429 3.2409 -1.4394 7 6 3.9808 2.8384 -0.4850 8 6 3.5831 1.4793 0.1267 9 1 4.0330 0.6614 -0.4359 10 6 3.9957 1.4116 1.5745 11 8 3.1883 1.6515 2.4471 12 7 5.2621 1.0843 1.8998 13 6 6.2278 0.6844 0.8651 14 6 6.8755 -0.6383 1.2888 15 7 7.4356 -0.4950 2.6391 16 6 8.2141 -1.6828 3.0148 17 6 8.9702 -1.4056 4.2886 18 8 8.8707 -0.3247 4.8299 19 7 9.7578 -2.3583 4.8258 20 6 10.4500 -2.1041 5.9816 21 1 10.3608 -1.1420 6.4640 22 6 11.2664 -3.0844 6.5323 23 7 11.3746 -4.2552 5.9455 24 14 12.2101 -2.7379 8.1067 25 1 11.3800 -3.1230 9.2762 26 1 13.4692 -3.5252 8.1126 27 1 12.5313 -1.2901 8.1828 28 6 6.3828 -0.2217 3.6265 29 6 5.7150 1.1180 3.2986 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.7858 2.5245 -1.4231 36 1 1.9529 1.3964 -2.1815 37 1 2.3990 4.1822 -1.1153 38 1 3.2247 3.3380 -2.4557 39 1 4.0892 3.5845 0.3023 40 1 4.9154 2.7406 -1.0374 41 1 6.9951 1.4519 0.7640 42 1 5.7117 0.5513 -0.0858 43 1 7.6719 -0.8936 0.5897 44 1 6.1242 -1.4280 1.2884 45 1 8.9190 -1.9219 2.2187 46 1 7.5399 -2.5254 3.1685 47 1 9.8376 -3.2225 4.3926 48 1 11.9443 -4.9397 6.3301 49 1 5.6381 -1.0170 3.5938 50 1 6.8220 -0.1749 4.6230 51 1 6.4330 1.9273 3.4316 52 1 4.8598 1.2717 3.9567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113307774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:39 Heat of formation + Delta-G solvation = -78.768323 kcal Electronic energy + Delta-G solvation = -30111.001803 eV Core-core repulsion = 26109.654034 eV Total energy + Delta-G solvation = -4001.347769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68268 -39.01285 -37.96396 -37.02930 -34.54930 -33.78146 -33.42561 -31.43801 -31.18797 -29.76834 -28.48696 -27.91113 -25.73051 -24.01263 -23.82787 -23.03942 -21.87214 -20.53107 -20.16141 -19.25097 -18.80888 -17.90291 -17.37646 -16.29935 -15.99664 -15.73535 -15.15804 -15.06453 -14.85096 -14.75486 -14.60986 -14.50868 -13.94790 -13.88492 -13.64808 -13.53111 -13.43613 -13.24222 -12.85956 -12.49139 -12.27536 -12.10515 -11.98568 -11.68749 -11.57210 -11.53597 -11.43593 -11.28856 -11.14305 -11.00869 -10.92004 -10.88564 -10.75172 -10.73590 -10.64391 -10.40212 -10.23526 -9.69668 -9.48707 -8.84069 -8.37590 -8.00543 -7.90760 -6.43560 -3.84392 2.57279 2.92278 3.16705 3.25673 3.31453 3.86303 3.91049 4.10972 4.21189 4.27081 4.31927 4.64194 4.82165 4.87528 4.91050 4.97231 4.99538 5.07281 5.09489 5.19506 5.21498 5.23551 5.28532 5.31465 5.34810 5.41902 5.44910 5.57078 5.61001 5.62692 5.68266 5.68535 5.77781 5.79350 5.82905 5.86391 5.88274 5.90325 5.96440 6.06176 6.14791 6.22067 6.23473 6.24760 6.55580 7.13451 7.29833 7.42165 7.53663 8.04345 8.14426 8.59342 9.16153 9.52121 10.03501 10.74111 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.002060 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.085002 B =13586.108132 C =13724.802785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.075 4.075 4 H 0.092 0.908 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.110 4.110 8 C -0.112 4.112 9 H 0.096 0.904 10 C 0.521 3.479 11 O -0.543 6.543 12 N -0.612 5.612 13 C 0.113 3.887 14 C 0.039 3.961 15 N -0.514 5.514 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.577 6.577 19 N -0.563 5.563 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.041 3.959 29 C 0.119 3.881 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.034 0.966 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.026 0.974 50 H 0.115 0.885 51 H 0.077 0.923 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.600 7.888 -18.309 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.094 4.094 4 H 0.111 0.889 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.148 4.148 8 C -0.134 4.134 9 H 0.114 0.886 10 C 0.309 3.691 11 O -0.421 6.421 12 N -0.345 5.345 13 C -0.011 4.011 14 C -0.090 4.090 15 N -0.239 5.239 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.462 6.462 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.087 4.087 29 C -0.003 4.003 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.053 0.947 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.044 0.956 50 H 0.133 0.867 51 H 0.096 0.904 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.652 8.982 -17.412 25.712 hybrid contribution 0.300 -1.353 0.465 1.461 sum -16.352 7.629 -16.946 24.754 Atomic orbital electron populations 1.21743 0.95657 1.01464 1.01830 1.21505 0.96197 0.95829 1.01787 1.22091 0.92478 0.96776 0.98063 0.88949 1.22440 0.98956 0.97384 0.96869 1.22110 0.95790 0.98851 0.99272 1.22038 0.98891 0.95095 0.98745 1.22265 0.98130 0.99900 0.93065 0.88614 1.20520 0.81269 0.76119 0.91149 1.90666 1.50700 1.49979 1.50717 1.48269 1.10521 1.66956 1.08760 1.21886 0.91884 0.96800 0.90484 1.22502 0.98377 0.96117 0.92050 1.61515 1.23964 1.37449 1.00960 1.21850 0.97120 0.91043 0.98442 1.19712 0.84505 0.85907 0.87047 1.90486 1.67254 1.24508 1.63932 1.41872 1.40263 1.14146 1.23708 1.19694 1.21670 1.01022 1.00401 0.87879 1.25267 0.98017 0.95001 0.99688 1.69609 1.39752 1.04501 1.40440 0.85855 0.78641 0.78618 0.81173 1.20422 1.20936 1.19390 1.22644 0.91893 0.95311 0.98895 1.21744 0.99060 0.98187 0.81293 0.92602 0.92762 0.92928 0.92121 0.92011 0.91421 0.91462 0.91638 0.91567 0.91362 0.91017 0.90305 0.89581 0.89488 0.94737 0.89203 0.93479 0.77501 0.91867 0.95576 0.86718 0.90426 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.16 0.36 -0.79 16 2 C -0.12 -0.99 5.43 -26.73 -0.15 -1.14 16 3 C -0.08 -0.67 2.08 -88.64 -0.18 -0.86 16 4 H 0.09 1.04 7.27 -51.93 -0.38 0.66 16 5 C -0.12 -0.81 5.70 -25.07 -0.14 -0.95 16 6 C -0.12 -0.81 6.80 -25.61 -0.17 -0.99 16 7 C -0.11 -0.86 6.36 -25.62 -0.16 -1.02 16 8 C -0.11 -1.03 1.80 -90.13 -0.16 -1.19 16 9 H 0.10 0.74 6.28 -51.93 -0.33 0.41 16 10 C 0.52 6.72 6.79 -10.98 -0.07 6.64 16 11 O -0.54 -8.93 15.18 5.56 0.08 -8.85 16 12 N -0.61 -7.77 3.01 -172.46 -0.52 -8.29 16 13 C 0.11 1.15 6.48 -3.60 -0.02 1.12 16 14 C 0.04 0.45 5.62 -3.70 -0.02 0.43 16 15 N -0.51 -8.18 4.37 -235.76 -1.03 -9.21 16 16 C 0.05 0.80 5.45 -4.97 -0.03 0.78 16 17 C 0.44 10.16 7.44 -10.98 -0.08 10.08 16 18 O -0.58 -15.08 13.91 5.54 0.08 -15.00 16 19 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 20 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 C 0.04 0.67 5.26 -3.70 -0.02 0.65 16 29 C 0.12 1.77 6.61 -3.60 -0.02 1.75 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.45 7.99 -51.93 -0.41 0.03 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.07 0.40 7.93 -51.93 -0.41 -0.01 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.63 5.56 -51.93 -0.29 0.34 16 43 H 0.09 0.86 7.99 -51.93 -0.41 0.45 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 1.37 7.97 -51.93 -0.41 0.95 16 46 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.11 2.26 5.77 -51.93 -0.30 1.96 16 51 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 52 H 0.09 1.42 7.04 -51.93 -0.37 1.05 16 LS Contribution 402.74 15.07 6.07 6.07 Total: -1.00 -31.94 402.74 -9.81 -41.76 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -9.02 Total: 8.63 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.12 Total: 6.66 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.88 Total: -55.18 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.16 Total: -23.85 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.94 -9.81 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113307774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.010 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds