Wall clock time and date at job start Tue Mar 31 2020 19:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47216 * 2 1 4 4 C 1.50700 * 109.47185 * 180.02562 * 3 2 1 5 5 O 1.21275 * 120.00122 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99611 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99612 * 179.97438 * 6 4 3 8 8 H 1.08998 * 115.49866 * 9.60778 * 7 6 4 9 9 C 1.53000 * 117.44314 * 224.22614 * 7 6 4 10 10 H 1.09003 * 120.23499 * 3.80481 * 9 7 6 11 11 C 1.54382 * 118.12884 * 160.68716 * 9 7 6 12 12 N 1.48557 * 104.59742 * 87.22557 * 11 9 7 13 13 C 1.46891 * 111.00132 * 200.95955 * 12 11 9 14 14 C 1.50702 * 109.47528 * 285.41976 * 13 12 11 15 15 O 1.21287 * 119.99578 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00755 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99455 * 0.02562 * 16 14 13 18 18 C 1.52997 * 109.47212 * 90.00023 * 17 16 14 19 19 C 1.46493 * 120.00646 * 179.97438 * 16 14 13 20 20 C 1.50695 * 109.47443 * 270.00265 * 19 16 14 21 21 H 1.08001 * 120.00056 * 359.97438 * 20 19 16 22 22 C 1.37877 * 120.00480 * 179.97438 * 20 19 16 23 23 N 1.31517 * 119.99528 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00487 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46798 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47215 * 119.99681 * 24 22 20 27 27 H 1.48494 * 109.47431 * 240.00047 * 24 22 20 28 28 C 1.48564 * 104.22261 * 320.52063 * 12 11 9 29 29 C 1.53002 * 117.44605 * 154.99734 * 7 6 4 30 30 H 1.08998 * 120.22801 * 356.18948 * 29 7 6 31 31 H 1.09002 * 109.47403 * 60.00173 * 1 2 3 32 32 H 1.09004 * 109.47285 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47200 * 299.99668 * 1 2 3 34 34 H 1.09005 * 109.46847 * 239.99994 * 2 1 3 35 35 H 1.09003 * 109.47122 * 120.00298 * 2 1 3 36 36 H 1.09005 * 109.47218 * 60.00221 * 3 2 1 37 37 H 1.09003 * 109.47318 * 300.00178 * 3 2 1 38 38 H 0.97003 * 120.00680 * 359.97438 * 6 4 3 39 39 H 1.08998 * 110.40979 * 328.44928 * 11 9 7 40 40 H 1.09003 * 110.40914 * 206.01016 * 11 9 7 41 41 H 1.09004 * 109.47465 * 165.42318 * 13 12 11 42 42 H 1.09002 * 109.47247 * 45.41997 * 13 12 11 43 43 H 1.09002 * 109.47068 * 210.00083 * 17 16 14 44 44 H 1.09001 * 109.47372 * 330.00170 * 17 16 14 45 45 H 1.08996 * 109.47853 * 179.97438 * 18 17 16 46 46 H 1.09002 * 109.47153 * 300.00008 * 18 17 16 47 47 H 1.08998 * 109.47533 * 59.99637 * 18 17 16 48 48 H 1.09006 * 109.46911 * 30.00087 * 19 16 14 49 49 H 1.08996 * 109.47170 * 149.99599 * 19 16 14 50 50 H 0.97003 * 119.99687 * 180.02562 * 23 22 20 51 51 H 1.09001 * 110.40705 * 158.25917 * 28 12 11 52 52 H 1.08994 * 110.40682 * 280.70108 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2208 2.6096 -0.0002 7 6 5.6858 2.6096 -0.0003 8 1 6.1550 1.6397 -0.1649 9 6 6.3910 3.5823 0.9471 10 1 5.8101 4.1978 1.6340 11 6 7.8667 3.3066 1.3072 12 7 8.6452 3.9717 0.2308 13 6 9.9986 3.4088 0.1353 14 6 10.8332 3.9089 1.2862 15 8 10.3480 4.6599 2.1057 16 7 12.1183 3.5208 1.4055 17 6 12.7042 2.6131 0.4159 18 6 13.3234 3.4288 -0.7207 19 6 12.9297 4.0073 2.5239 20 6 13.6169 5.2881 2.1263 21 1 13.4648 5.6985 1.1389 22 6 14.4398 5.9362 3.0228 23 7 14.6246 5.4368 4.2253 24 14 15.2921 7.5235 2.5296 25 1 14.9214 7.8715 1.1344 26 1 14.8686 8.6168 3.4411 27 1 16.7634 7.3446 2.6214 28 6 7.8666 3.6989 -1.0047 29 6 6.3910 3.8404 -0.5737 30 1 5.8100 4.6480 -1.0190 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 3.7358 3.4497 0.0001 39 1 8.0631 2.2345 1.3113 40 1 8.1093 3.7421 2.2765 41 1 10.4550 3.7173 -0.8053 42 1 9.9431 2.3208 0.1725 43 1 13.4759 2.0072 0.8907 44 1 11.9271 1.9625 0.0146 45 1 13.7597 2.7536 -1.4568 46 1 12.5516 4.0347 -1.1955 47 1 14.1005 4.0794 -0.3196 48 1 12.2877 4.1917 3.3853 49 1 13.6783 3.2585 2.7825 50 1 15.2033 5.8929 4.8562 51 1 8.1092 4.4300 -1.7760 52 1 8.0630 2.6882 -1.3623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113782432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:10 Heat of formation + Delta-G solvation = -37.822103 kcal Electronic energy + Delta-G solvation = -29114.074545 eV Core-core repulsion = 25114.502338 eV Total energy + Delta-G solvation = -3999.572207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.67057 -39.62082 -38.64455 -35.56454 -35.04110 -34.72316 -32.96588 -32.55926 -29.95750 -28.84979 -28.50059 -27.99735 -26.38064 -23.63597 -22.72466 -22.49505 -21.69361 -21.16923 -20.53936 -20.40441 -18.24056 -17.42455 -17.13415 -16.55217 -16.35051 -16.23983 -15.65080 -15.20193 -14.87269 -14.64114 -14.49454 -14.12917 -13.89145 -13.72307 -13.52682 -13.22370 -13.09456 -12.86719 -12.60968 -12.50619 -12.31148 -12.16874 -12.08951 -12.03165 -11.61530 -11.58488 -11.49737 -11.34409 -11.17046 -11.16490 -11.02852 -10.80281 -10.67789 -10.48511 -10.27644 -10.14646 -10.01192 -9.51636 -9.07508 -8.90065 -8.39651 -8.28409 -7.60388 -6.00414 -4.03977 2.21721 2.60770 3.31897 3.39246 3.41962 3.43954 3.49531 3.72365 4.16698 4.27549 4.41301 4.45334 4.47591 4.50068 4.57177 4.69012 4.90430 4.94889 5.04633 5.09523 5.16095 5.17814 5.25605 5.29885 5.34494 5.38831 5.41905 5.50601 5.55954 5.57875 5.64765 5.72247 5.79651 5.83277 5.86553 5.87802 5.90161 6.13090 6.14518 6.20900 6.33490 6.77282 6.80900 6.89503 7.08877 7.15489 7.48816 7.62201 7.85002 7.96899 8.28735 8.48499 8.96383 9.18870 9.60802 11.07761 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.001867 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.918014 B =14993.925740 C =15218.842562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.515 3.485 5 O -0.536 6.536 6 N -0.702 5.702 7 C 0.109 3.891 8 H 0.133 0.867 9 C -0.165 4.165 10 H 0.120 0.880 11 C 0.065 3.935 12 N -0.487 5.487 13 C 0.025 3.975 14 C 0.508 3.492 15 O -0.523 6.523 16 N -0.601 5.601 17 C 0.111 3.889 18 C -0.170 4.170 19 C 0.247 3.753 20 C -0.520 4.520 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.896 5.896 24 Si 0.896 3.104 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.284 1.284 28 C 0.062 3.938 29 C -0.169 4.169 30 H 0.120 0.880 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.403 0.597 39 H 0.044 0.956 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.076 0.924 48 H 0.042 0.958 49 H 0.030 0.970 50 H 0.261 0.739 51 H 0.090 0.910 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.654 -9.026 -12.741 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.180 4.180 4 C 0.303 3.697 5 O -0.412 6.412 6 N -0.352 5.352 7 C 0.003 3.997 8 H 0.151 0.849 9 C -0.186 4.186 10 H 0.138 0.862 11 C -0.062 4.062 12 N -0.211 5.211 13 C -0.106 4.106 14 C 0.293 3.707 15 O -0.398 6.398 16 N -0.334 5.334 17 C -0.013 4.013 18 C -0.228 4.228 19 C 0.128 3.872 20 C -0.559 4.559 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.535 5.535 24 Si 0.724 3.276 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.211 1.211 28 C -0.066 4.066 29 C -0.189 4.189 30 H 0.138 0.862 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.237 0.763 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.071 0.929 51 H 0.108 0.892 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.289 -8.793 -12.012 27.640 hybrid contribution 0.411 0.678 -0.437 0.905 sum -22.878 -8.115 -12.448 27.281 Atomic orbital electron populations 1.21796 0.95365 1.02096 1.01799 1.21291 0.95349 0.94500 1.03715 1.21732 0.91175 1.00516 1.04552 1.20831 0.90409 0.83295 0.75194 1.90719 1.70494 1.31241 1.48783 1.45366 1.05576 1.09045 1.75175 1.21781 0.79946 0.96219 1.01801 0.84913 1.23991 0.97595 1.03675 0.93313 0.86205 1.22700 0.89023 0.96756 0.97733 1.65317 1.00396 1.52952 1.02420 1.22281 0.90592 0.97783 0.99941 1.20029 0.82352 0.81837 0.86442 1.90660 1.71558 1.34833 1.42794 1.48267 1.10757 1.46567 1.27839 1.21376 0.97687 0.91982 0.90265 1.22234 1.02011 1.00747 0.97840 1.19263 0.89623 0.94287 0.84016 1.21496 1.26748 1.07799 0.99829 0.92255 1.24940 0.96780 0.97682 0.94827 1.69948 1.38323 1.39713 1.05537 0.86472 0.78937 0.83533 0.78655 1.19822 1.20958 1.21072 1.22638 0.89960 1.00294 0.93669 1.23844 0.97166 1.00230 0.97631 0.86198 0.92670 0.92312 0.92629 0.91181 0.91119 0.88705 0.88772 0.76256 0.93828 0.87909 0.88282 0.92330 0.90722 0.92309 0.92881 0.93305 0.90512 0.93971 0.95169 0.92884 0.89187 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.11 -0.71 5.22 -26.74 -0.14 -0.85 16 3 C -0.14 -0.76 5.70 -27.89 -0.16 -0.92 16 4 C 0.52 4.70 7.83 -10.99 -0.09 4.62 16 5 O -0.54 -7.23 15.55 5.56 0.09 -7.14 16 6 N -0.70 -5.44 5.56 -53.80 -0.30 -5.74 16 7 C 0.11 1.08 5.98 -67.93 -0.41 0.67 16 8 H 0.13 1.56 7.40 -51.93 -0.38 1.17 16 9 C -0.17 -1.83 7.05 -89.24 -0.63 -2.46 16 10 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 11 C 0.07 0.93 5.72 -2.18 -0.01 0.91 16 12 N -0.49 -7.23 4.98 -231.42 -1.15 -8.39 16 13 C 0.03 0.39 3.87 -4.98 -0.02 0.37 16 14 C 0.51 10.60 7.52 -10.99 -0.08 10.52 16 15 O -0.52 -13.24 14.80 5.55 0.08 -13.15 16 16 N -0.60 -12.67 2.46 -175.06 -0.43 -13.10 16 17 C 0.11 1.78 5.98 -4.04 -0.02 1.75 16 18 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 19 C 0.25 6.47 5.20 -5.20 -0.03 6.44 16 20 C -0.52 -14.70 8.92 -34.44 -0.31 -15.00 16 21 H 0.06 1.68 7.42 -52.49 -0.39 1.29 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 23 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 24 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.06 0.69 6.26 -2.18 -0.01 0.68 16 29 C -0.17 -1.63 7.05 -89.24 -0.63 -2.26 16 30 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.10 16 35 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 1.94 8.83 -40.82 -0.36 1.58 16 39 H 0.04 0.59 7.75 -51.93 -0.40 0.19 16 40 H 0.10 1.74 7.24 -51.93 -0.38 1.36 16 41 H 0.10 1.36 7.13 -51.93 -0.37 0.99 16 42 H 0.06 0.77 7.03 -51.93 -0.36 0.41 16 43 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 44 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.72 7.22 -51.93 -0.38 0.35 16 47 H 0.08 1.41 7.25 -51.93 -0.38 1.03 16 48 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 49 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 52 H 0.05 0.48 8.00 -51.93 -0.42 0.06 16 LS Contribution 418.09 15.07 6.30 6.30 Total: -1.00 -35.71 418.09 -10.71 -46.43 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -9.13 Total: 0.24 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.88 Total: 3.54 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -1.14 Total: -53.26 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.17 Total: -20.30 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.71 -10.71 -46.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113782432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.607 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds