Wall clock time and date at job start Tue Mar 31 2020 20:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47558 * 2 1 4 4 H 1.09005 * 109.46829 * 304.99976 * 3 2 1 5 5 C 1.52999 * 109.47193 * 64.99402 * 3 2 1 6 6 C 1.52995 * 109.47483 * 185.00238 * 3 2 1 7 7 C 1.52990 * 109.47353 * 175.00039 * 6 3 2 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.09004 * 115.51982 * 350.14327 * 11 10 8 13 13 C 1.53005 * 117.44191 * 204.71985 * 11 10 8 14 14 H 1.09001 * 119.52274 * 5.65060 * 13 11 10 15 15 C 1.54377 * 118.12385 * 160.68214 * 13 11 10 16 16 N 1.48556 * 104.59439 * 87.23559 * 15 13 11 17 17 C 1.46895 * 111.00170 * 200.95515 * 16 15 13 18 18 C 1.50704 * 109.47284 * 169.99858 * 17 16 15 19 19 O 1.21293 * 120.00054 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00216 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00480 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99666 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00341 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99927 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99813 * 180.02562 * 23 21 20 26 26 H 1.48488 * 109.47121 * 60.00140 * 25 23 21 27 27 H 1.48496 * 109.46766 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47202 * 299.99889 * 25 23 21 29 29 C 1.48562 * 104.22048 * 320.51284 * 16 15 13 30 30 C 1.52999 * 117.44391 * 135.49708 * 11 10 8 31 31 H 1.09000 * 119.52999 * 355.89725 * 30 11 10 32 32 H 1.09007 * 109.46976 * 300.00459 * 1 2 3 33 33 H 1.09005 * 109.47202 * 59.99953 * 1 2 3 34 34 H 1.08994 * 109.47730 * 180.02562 * 1 2 3 35 35 H 1.08993 * 109.47010 * 239.99714 * 2 1 3 36 36 H 1.08999 * 109.46547 * 119.99832 * 2 1 3 37 37 H 1.09005 * 109.46765 * 60.00534 * 5 3 2 38 38 H 1.09001 * 109.47555 * 180.02562 * 5 3 2 39 39 H 1.08998 * 109.47727 * 300.00422 * 5 3 2 40 40 H 1.08998 * 109.47142 * 54.99412 * 6 3 2 41 41 H 1.09011 * 109.46657 * 294.99970 * 6 3 2 42 42 H 1.08998 * 109.47508 * 59.99597 * 7 6 3 43 43 H 1.09002 * 109.47337 * 299.99883 * 7 6 3 44 44 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 45 45 H 1.09000 * 110.41086 * 206.00755 * 15 13 11 46 46 H 1.08994 * 110.41964 * 328.33243 * 15 13 11 47 47 H 1.08999 * 109.47485 * 290.00067 * 17 16 15 48 48 H 1.09003 * 109.47054 * 49.99942 * 17 16 15 49 49 H 0.97007 * 120.00077 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99837 * 179.97438 * 24 23 21 51 51 H 1.09005 * 110.41117 * 158.26414 * 29 16 15 52 52 H 1.08996 * 110.40936 * 280.58341 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4442 -0.1258 7 6 4.0646 2.8848 -0.2512 8 6 5.5666 2.8866 -0.3744 9 8 6.1772 1.8388 -0.3626 10 7 6.2313 4.0527 -0.4967 11 6 7.6909 4.0540 -0.6226 12 1 8.1787 3.0960 -0.4420 13 6 8.4351 5.3176 -0.1864 14 1 7.8827 6.1308 0.2844 15 6 9.9431 5.2035 0.1238 16 7 10.6112 5.4025 -1.1881 17 6 11.9713 4.8476 -1.1758 18 6 12.5252 4.8444 -2.5773 19 8 11.8530 5.2628 -3.4961 20 7 13.7673 4.3757 -2.8099 21 6 14.2711 4.3723 -4.0849 22 1 13.6728 4.7456 -4.9029 23 6 15.5518 3.8895 -4.3247 24 7 16.2800 3.4358 -3.3293 25 14 16.2384 3.8856 -6.0619 26 1 16.2757 5.2757 -6.5826 27 1 17.6131 3.3241 -6.0495 28 1 15.3721 3.0532 -6.9347 29 6 9.7473 4.6733 -2.1519 30 6 8.3063 4.9688 -1.6834 31 1 7.6541 5.5326 -2.3504 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.0699 1.5875 2.1491 38 1 1.9983 3.1544 1.3071 39 1 0.5490 2.1253 1.3969 40 1 3.8571 0.8799 -1.0113 41 1 4.0030 0.9834 0.7597 42 1 3.7724 3.4492 0.6344 43 1 3.6265 3.3456 -1.1365 44 1 5.7429 4.8907 -0.5058 45 1 10.2465 5.9797 0.8264 46 1 10.1752 4.2170 0.5249 47 1 12.6072 5.4585 -0.5351 48 1 11.9439 3.8271 -0.7936 49 1 14.3048 4.0407 -2.0752 50 1 17.1739 3.0985 -3.4968 51 1 9.9033 5.0501 -3.1628 52 1 9.9507 3.6032 -2.1104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115007675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:02 Heat of formation + Delta-G solvation = -54.629498 kcal Electronic energy + Delta-G solvation = -28330.435385 eV Core-core repulsion = 24330.134354 eV Total energy + Delta-G solvation = -4000.301031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.49288 -39.45912 -38.00089 -37.42682 -35.10426 -33.89695 -32.94126 -32.22985 -31.22941 -29.23479 -28.21301 -27.58543 -26.24799 -24.68171 -23.31802 -22.07050 -20.99384 -20.44578 -20.24567 -20.20161 -19.14144 -17.83224 -17.29992 -16.95778 -16.12187 -15.84238 -15.41301 -15.12725 -15.10037 -14.71147 -14.52385 -14.18415 -13.87314 -13.79323 -13.66728 -13.48289 -13.36751 -13.01775 -12.86614 -12.41046 -12.35074 -12.16928 -12.05795 -12.01050 -11.83658 -11.54181 -11.33520 -11.29430 -11.21627 -10.98541 -10.96385 -10.92579 -10.83255 -10.80152 -10.43329 -10.21895 -10.09957 -9.97969 -9.48420 -8.89713 -8.40090 -8.03038 -7.92225 -6.41614 -3.82525 2.35591 2.75037 3.20501 3.26393 3.30672 3.64244 3.89108 4.06923 4.22783 4.29425 4.34191 4.45455 4.61542 4.65164 4.67796 4.80300 4.87163 4.90637 4.98875 5.02563 5.11152 5.14468 5.19227 5.21664 5.25745 5.35679 5.38275 5.53063 5.58725 5.60589 5.63450 5.67203 5.69293 5.73809 5.76873 5.78795 5.86471 5.94151 6.01734 6.05725 6.06621 6.15751 6.26247 6.35886 6.64424 7.14005 7.22865 7.25683 7.55232 7.99065 8.05550 8.61217 9.17614 9.53430 10.04970 10.75928 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020587 B = 0.001619 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.726516 B =17289.522177 C =18071.254299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.152 4.152 6 C -0.100 4.100 7 C -0.140 4.140 8 C 0.514 3.486 9 O -0.536 6.536 10 N -0.702 5.702 11 C 0.102 3.898 12 H 0.132 0.868 13 C -0.170 4.170 14 H 0.117 0.883 15 C 0.059 3.941 16 N -0.487 5.487 17 C 0.034 3.966 18 C 0.442 3.558 19 O -0.581 6.581 20 N -0.560 5.560 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.066 3.934 30 C -0.162 4.162 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.401 0.599 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.393 0.607 50 H 0.272 0.728 51 H 0.122 0.878 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.682 -1.105 11.688 30.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.138 4.138 7 C -0.180 4.180 8 C 0.302 3.698 9 O -0.411 6.411 10 N -0.351 5.351 11 C -0.005 4.005 12 H 0.149 0.851 13 C -0.190 4.190 14 H 0.135 0.865 15 C -0.069 4.069 16 N -0.211 5.211 17 C -0.098 4.098 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.197 5.197 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.062 4.062 30 C -0.183 4.183 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.236 0.764 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.110 0.890 48 H 0.068 0.932 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.140 0.860 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -27.411 -1.121 10.945 29.536 hybrid contribution 0.565 -0.497 -0.096 0.759 sum -26.846 -1.618 10.849 29.000 Atomic orbital electron populations 1.21827 0.95942 1.01541 1.01803 1.21567 0.95771 0.96226 1.02268 1.21202 0.95105 0.96441 0.98439 0.91133 1.21959 1.01327 1.00380 0.97250 1.21410 0.94263 0.94515 1.03646 1.21749 0.91355 1.00549 1.04355 1.20812 0.90283 0.83321 0.75433 1.90728 1.69959 1.31336 1.49122 1.45353 1.06195 1.09123 1.74434 1.21822 0.80108 0.96495 1.02045 0.85053 1.23802 0.96408 0.99443 0.99340 0.86490 1.22683 0.90567 1.00537 0.93083 1.65413 1.00746 1.51774 1.03149 1.22100 0.91202 0.98631 0.97878 1.19681 0.83522 0.84552 0.89522 1.90444 1.58960 1.51849 1.45369 1.41836 1.12902 1.54799 1.10123 1.19658 0.98428 1.39239 0.85688 0.87918 1.25265 0.96212 0.96820 0.99547 1.69605 1.11206 1.41890 1.31489 0.85910 0.77704 0.78749 0.81813 1.19872 1.20971 1.19919 1.22849 0.86978 0.96295 1.00040 1.24124 0.98975 1.03533 0.91664 0.86551 0.92553 0.92823 0.92894 0.91866 0.91913 0.92605 0.92619 0.92501 0.91045 0.91085 0.88679 0.88819 0.76436 0.89530 0.93674 0.88974 0.93184 0.77422 0.91793 0.86025 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.12 -0.71 5.40 -26.73 -0.14 -0.85 16 3 C -0.09 -0.53 2.39 -90.62 -0.22 -0.74 16 4 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 5 C -0.15 -0.75 8.70 37.16 0.32 -0.42 16 6 C -0.10 -0.75 3.97 -26.74 -0.11 -0.85 16 7 C -0.14 -0.91 5.45 -27.89 -0.15 -1.07 16 8 C 0.51 5.43 7.83 -10.98 -0.09 5.34 16 9 O -0.54 -8.10 15.55 5.55 0.09 -8.01 16 10 N -0.70 -6.52 5.56 -53.80 -0.30 -6.82 16 11 C 0.10 1.22 5.97 -67.93 -0.41 0.81 16 12 H 0.13 1.88 7.40 -51.93 -0.38 1.50 16 13 C -0.17 -1.94 7.05 -89.24 -0.63 -2.57 16 14 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 15 C 0.06 0.78 6.29 -2.19 -0.01 0.77 16 16 N -0.49 -8.30 5.33 -231.41 -1.23 -9.54 16 17 C 0.03 0.61 5.55 -4.98 -0.03 0.58 16 18 C 0.44 10.47 7.50 -10.98 -0.08 10.39 16 19 O -0.58 -15.46 13.24 5.55 0.07 -15.38 16 20 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 29 C 0.07 1.13 5.12 -2.18 -0.01 1.12 16 30 C -0.16 -2.15 7.05 -89.24 -0.63 -2.78 16 31 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.06 0.26 6.57 -51.93 -0.34 -0.08 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.05 0.24 6.57 -51.93 -0.34 -0.11 16 39 H 0.06 0.25 6.56 -51.93 -0.34 -0.09 16 40 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.07 0.62 8.10 -51.92 -0.42 0.20 16 42 H 0.09 0.44 6.57 -51.93 -0.34 0.10 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.40 2.47 8.83 -40.82 -0.36 2.11 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.58 7.82 -51.93 -0.41 0.18 16 47 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 48 H 0.05 0.85 7.88 -51.93 -0.41 0.44 16 49 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 51 H 0.12 2.49 6.05 -51.93 -0.31 2.18 16 52 H 0.04 0.72 7.99 -51.93 -0.42 0.31 16 LS Contribution 413.38 15.07 6.23 6.23 Total: -1.00 -32.86 413.38 -10.54 -43.40 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -8.98 Total: 10.92 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.06 Total: 1.29 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.87 Total: -54.57 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.16 Total: -23.39 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.86 -10.54 -43.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115007675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.228 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds