Wall clock time and date at job start Tue Mar 31 2020 20:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47558 * 2 1 4 4 H 1.09005 * 109.46829 * 304.99976 * 3 2 1 5 5 C 1.52999 * 109.47193 * 64.99402 * 3 2 1 6 6 C 1.52995 * 109.47483 * 185.00238 * 3 2 1 7 7 C 1.52990 * 109.47353 * 175.00039 * 6 3 2 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.09004 * 115.51982 * 350.14327 * 11 10 8 13 13 C 1.53005 * 117.44191 * 204.71985 * 11 10 8 14 14 H 1.09001 * 119.52274 * 5.65060 * 13 11 10 15 15 C 1.54377 * 118.12385 * 160.68214 * 13 11 10 16 16 N 1.48556 * 104.59439 * 87.23559 * 15 13 11 17 17 C 1.46895 * 111.00170 * 200.95515 * 16 15 13 18 18 C 1.50704 * 109.47284 * 169.99858 * 17 16 15 19 19 O 1.21293 * 120.00054 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00216 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00480 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99666 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00341 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99927 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99813 * 180.02562 * 23 21 20 26 26 H 1.48488 * 109.47121 * 60.00140 * 25 23 21 27 27 H 1.48496 * 109.46766 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47202 * 299.99889 * 25 23 21 29 29 C 1.48562 * 104.22048 * 320.51284 * 16 15 13 30 30 C 1.52999 * 117.44391 * 135.49708 * 11 10 8 31 31 H 1.09000 * 119.52999 * 355.89725 * 30 11 10 32 32 H 1.09007 * 109.46976 * 300.00459 * 1 2 3 33 33 H 1.09005 * 109.47202 * 59.99953 * 1 2 3 34 34 H 1.08994 * 109.47730 * 180.02562 * 1 2 3 35 35 H 1.08993 * 109.47010 * 239.99714 * 2 1 3 36 36 H 1.08999 * 109.46547 * 119.99832 * 2 1 3 37 37 H 1.09005 * 109.46765 * 60.00534 * 5 3 2 38 38 H 1.09001 * 109.47555 * 180.02562 * 5 3 2 39 39 H 1.08998 * 109.47727 * 300.00422 * 5 3 2 40 40 H 1.08998 * 109.47142 * 54.99412 * 6 3 2 41 41 H 1.09011 * 109.46657 * 294.99970 * 6 3 2 42 42 H 1.08998 * 109.47508 * 59.99597 * 7 6 3 43 43 H 1.09002 * 109.47337 * 299.99883 * 7 6 3 44 44 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 45 45 H 1.09000 * 110.41086 * 206.00755 * 15 13 11 46 46 H 1.08994 * 110.41964 * 328.33243 * 15 13 11 47 47 H 1.08999 * 109.47485 * 290.00067 * 17 16 15 48 48 H 1.09003 * 109.47054 * 49.99942 * 17 16 15 49 49 H 0.97007 * 120.00077 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99837 * 179.97438 * 24 23 21 51 51 H 1.09005 * 110.41117 * 158.26414 * 29 16 15 52 52 H 1.08996 * 110.40936 * 280.58341 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4442 -0.1258 7 6 4.0646 2.8848 -0.2512 8 6 5.5666 2.8866 -0.3744 9 8 6.1772 1.8388 -0.3626 10 7 6.2313 4.0527 -0.4967 11 6 7.6909 4.0540 -0.6226 12 1 8.1787 3.0960 -0.4420 13 6 8.4351 5.3176 -0.1864 14 1 7.8827 6.1308 0.2844 15 6 9.9431 5.2035 0.1238 16 7 10.6112 5.4025 -1.1881 17 6 11.9713 4.8476 -1.1758 18 6 12.5252 4.8444 -2.5773 19 8 11.8530 5.2628 -3.4961 20 7 13.7673 4.3757 -2.8099 21 6 14.2711 4.3723 -4.0849 22 1 13.6728 4.7456 -4.9029 23 6 15.5518 3.8895 -4.3247 24 7 16.2800 3.4358 -3.3293 25 14 16.2384 3.8856 -6.0619 26 1 16.2757 5.2757 -6.5826 27 1 17.6131 3.3241 -6.0495 28 1 15.3721 3.0532 -6.9347 29 6 9.7473 4.6733 -2.1519 30 6 8.3063 4.9688 -1.6834 31 1 7.6541 5.5326 -2.3504 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.0699 1.5875 2.1491 38 1 1.9983 3.1544 1.3071 39 1 0.5490 2.1253 1.3969 40 1 3.8571 0.8799 -1.0113 41 1 4.0030 0.9834 0.7597 42 1 3.7724 3.4492 0.6344 43 1 3.6265 3.3456 -1.1365 44 1 5.7429 4.8907 -0.5058 45 1 10.2465 5.9797 0.8264 46 1 10.1752 4.2170 0.5249 47 1 12.6072 5.4585 -0.5351 48 1 11.9439 3.8271 -0.7936 49 1 14.3048 4.0407 -2.0752 50 1 17.1739 3.0985 -3.4968 51 1 9.9033 5.0501 -3.1628 52 1 9.9507 3.6032 -2.1104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115007675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:01 Heat of formation + Delta-G solvation = -78.086776 kcal Electronic energy + Delta-G solvation = -28331.452569 eV Core-core repulsion = 24330.134354 eV Total energy + Delta-G solvation = -4001.318215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54976 -40.58744 -39.65001 -37.99996 -36.40610 -35.76025 -33.88686 -33.30675 -32.92520 -29.78707 -29.39618 -28.99244 -26.95352 -26.37500 -24.20115 -23.09167 -22.00934 -21.45466 -21.18445 -20.94798 -20.72459 -19.85836 -18.11952 -17.93506 -17.60501 -16.76431 -16.63712 -16.41524 -16.30856 -15.92938 -15.68035 -15.51627 -15.04818 -14.93588 -14.69460 -14.35108 -14.33590 -14.15980 -13.81030 -13.53351 -13.41843 -13.29726 -13.16215 -12.94133 -12.78652 -12.63315 -12.54425 -12.47420 -12.45195 -12.40486 -12.12533 -11.91433 -11.85261 -11.49364 -11.46966 -11.38809 -11.29193 -11.13207 -10.90140 -10.23499 -10.03419 -9.80165 -9.42233 -8.48160 -5.97128 1.38446 1.40437 1.51527 1.52981 1.92031 2.01270 2.27461 2.63868 2.85793 3.18450 3.30372 3.56996 3.68063 3.71760 3.80946 3.83043 3.97564 4.09438 4.13692 4.24956 4.25956 4.32698 4.40915 4.43043 4.50344 4.53740 4.57468 4.61866 4.67687 4.73343 4.76708 4.83694 4.91985 4.97764 5.09499 5.11040 5.13029 5.20651 5.22273 5.24821 5.26705 5.34436 5.39313 5.45448 5.59117 5.60360 5.77526 5.85534 6.05369 6.50834 6.58090 7.10478 7.23059 7.52650 8.08310 8.69008 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020587 B = 0.001619 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.726516 B =17289.522177 C =18071.254299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.087 4.087 4 H 0.081 0.919 5 C -0.151 4.151 6 C -0.099 4.099 7 C -0.130 4.130 8 C 0.509 3.491 9 O -0.589 6.589 10 N -0.686 5.686 11 C 0.107 3.893 12 H 0.104 0.896 13 C -0.142 4.142 14 H 0.153 0.847 15 C 0.055 3.945 16 N -0.500 5.500 17 C 0.044 3.956 18 C 0.438 3.562 19 O -0.614 6.614 20 N -0.571 5.571 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.066 3.934 30 C -0.173 4.173 31 H 0.130 0.870 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.421 0.579 45 H 0.111 0.889 46 H 0.048 0.952 47 H 0.116 0.884 48 H 0.065 0.935 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.082 0.918 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.478 0.394 13.047 32.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.105 4.105 4 H 0.099 0.901 5 C -0.208 4.208 6 C -0.137 4.137 7 C -0.169 4.169 8 C 0.299 3.701 9 O -0.469 6.469 10 N -0.337 5.337 11 C -0.001 4.001 12 H 0.122 0.878 13 C -0.162 4.162 14 H 0.170 0.830 15 C -0.072 4.072 16 N -0.225 5.225 17 C -0.087 4.087 18 C 0.225 3.775 19 O -0.501 6.501 20 N -0.208 5.208 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.061 4.061 30 C -0.193 4.193 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.259 0.741 45 H 0.129 0.871 46 H 0.066 0.934 47 H 0.134 0.866 48 H 0.083 0.917 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.100 0.900 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -29.233 0.413 12.335 31.731 hybrid contribution 1.098 -0.990 -0.501 1.561 sum -28.135 -0.577 11.834 30.528 Atomic orbital electron populations 1.21807 0.95036 1.01732 1.02277 1.21591 0.96563 0.96517 1.01521 1.21150 0.93513 0.96377 0.99465 0.90105 1.21960 1.01801 1.00826 0.96237 1.21362 0.95607 0.94972 1.01758 1.21787 0.87998 1.00293 1.06799 1.21603 0.91869 0.82618 0.74057 1.90715 1.71285 1.33312 1.51605 1.45218 1.04960 1.09949 1.73531 1.21509 0.81697 0.95560 1.01293 0.87825 1.23905 0.95553 0.99588 0.97151 0.82982 1.22836 0.91402 1.01662 0.91318 1.65416 1.00213 1.51636 1.05220 1.21996 0.92339 1.00218 0.94138 1.20686 0.82601 0.82639 0.91569 1.90438 1.59599 1.52730 1.47295 1.41906 1.13720 1.55642 1.09539 1.19644 0.99293 1.41178 0.86381 0.90210 1.26050 0.95869 0.95806 1.03449 1.69669 1.11534 1.41757 1.33075 0.84978 0.77428 0.78776 0.77086 1.19570 1.19418 1.19839 1.22593 0.90135 0.94752 0.98661 1.23933 0.97027 1.05214 0.93137 0.85213 0.91912 0.92438 0.92931 0.92804 0.92598 0.93316 0.91305 0.91795 0.93250 0.92921 0.85813 0.86275 0.74061 0.87061 0.93379 0.86601 0.91719 0.77025 0.91263 0.89972 0.96288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 71.98 0.70 -0.65 16 2 C -0.12 -1.40 5.40 30.59 0.17 -1.23 16 3 C -0.09 -0.84 2.39 -10.80 -0.03 -0.87 16 4 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 5 C -0.15 -1.12 8.70 71.98 0.63 -0.50 16 6 C -0.10 -1.41 3.97 30.59 0.12 -1.29 16 7 C -0.13 -1.37 5.45 29.85 0.16 -1.21 16 8 C 0.51 10.12 7.83 87.66 0.69 10.81 16 9 O -0.59 -18.23 15.55 -3.04 -0.05 -18.28 16 10 N -0.69 -11.18 5.56 -442.52 -2.46 -13.64 16 11 C 0.11 2.43 5.97 44.99 0.27 2.70 16 12 H 0.10 3.03 7.40 -2.38 -0.02 3.01 16 13 C -0.14 -2.84 7.05 -9.90 -0.07 -2.91 16 14 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 15 C 0.06 1.32 6.29 86.45 0.54 1.86 16 16 N -0.50 -16.78 5.33 -886.06 -4.73 -21.51 16 17 C 0.04 1.61 5.55 85.56 0.47 2.09 16 18 C 0.44 21.39 7.50 87.66 0.66 22.05 16 19 O -0.61 -34.17 13.24 -3.07 -0.04 -34.21 16 20 N -0.57 -30.01 5.29 -306.98 -1.62 -31.63 16 21 C -0.34 -19.37 9.68 84.04 0.81 -18.56 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 25 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 C 0.07 2.37 5.12 86.45 0.44 2.81 16 30 C -0.17 -4.41 7.05 -9.90 -0.07 -4.48 16 31 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.06 0.48 6.57 -2.38 -0.02 0.46 16 33 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.07 0.33 6.57 -2.39 -0.02 0.32 16 39 H 0.06 0.40 6.56 -2.39 -0.02 0.39 16 40 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 41 H 0.05 0.93 8.10 -2.38 -0.02 0.92 16 42 H 0.12 0.66 6.57 -2.39 -0.02 0.64 16 43 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.42 3.56 8.83 -92.71 -0.82 2.74 16 45 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.05 1.15 7.82 -2.39 -0.02 1.13 16 47 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 48 H 0.06 2.17 7.88 -2.39 -0.02 2.15 16 49 H 0.40 19.80 7.90 -92.70 -0.73 19.07 16 50 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 51 H 0.08 3.58 6.05 -2.38 -0.01 3.57 16 52 H 0.02 0.73 7.99 -2.39 -0.02 0.71 16 Total: -1.00 -75.45 413.38 -1.25 -76.70 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.62 Total: 36.59 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 5.96 Total: 10.45 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -8.53 Total: -116.82 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.09 Total: -52.49 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -75.45 -1.25 -76.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115007675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.382 kcal (2) G-P(sol) polarization free energy of solvation -75.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds