Wall clock time and date at job start Tue Mar 31 2020 20:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46723 * 2 1 4 4 H 1.09000 * 109.99703 * 306.01236 * 3 2 1 5 5 C 1.54323 * 109.88341 * 67.11434 * 3 2 1 6 6 H 1.08997 * 110.71687 * 259.96807 * 5 3 2 7 7 C 1.52998 * 110.71963 * 23.07086 * 5 3 2 8 8 C 1.55157 * 102.93792 * 141.61123 * 5 3 2 9 9 C 1.54909 * 101.58469 * 324.49244 * 8 5 3 10 10 N 1.47020 * 109.87902 * 184.92315 * 3 2 1 11 11 C 1.34777 * 125.64909 * 61.59441 * 10 3 2 12 12 O 1.21353 * 120.00266 * 5.19555 * 11 10 3 13 13 C 1.49459 * 120.00067 * 185.18783 * 11 10 3 14 14 O 1.21344 * 120.00008 * 0.02562 * 13 11 10 15 15 N 1.34777 * 120.00067 * 180.02562 * 13 11 10 16 16 C 1.46493 * 120.00011 * 180.02562 * 15 13 11 17 17 C 1.53037 * 109.46081 * 275.07019 * 16 15 13 18 18 C 1.53194 * 109.31632 * 178.61548 * 17 16 15 19 19 N 1.46925 * 108.77556 * 54.63281 * 18 17 16 20 20 C 1.36934 * 120.63416 * 126.41807 * 19 18 17 21 21 H 1.07999 * 120.00027 * 211.66229 * 20 19 18 22 22 C 1.38813 * 120.00037 * 31.65261 * 20 19 18 23 23 N 1.31619 * 119.99764 * 10.62761 * 22 20 19 24 24 Si 1.86798 * 120.00102 * 190.62464 * 22 20 19 25 25 H 1.48502 * 109.47058 * 60.00879 * 24 22 20 26 26 H 1.48500 * 109.46773 * 180.02562 * 24 22 20 27 27 H 1.48490 * 109.47144 * 300.00330 * 24 22 20 28 28 C 1.46929 * 118.73755 * 306.39492 * 19 18 17 29 29 C 1.53042 * 109.46125 * 155.00004 * 16 15 13 30 30 H 1.09004 * 109.47014 * 67.03305 * 1 2 3 31 31 H 1.09000 * 109.46872 * 187.02725 * 1 2 3 32 32 H 1.08996 * 109.47097 * 307.02870 * 1 2 3 33 33 H 1.08998 * 109.47323 * 239.99949 * 2 1 3 34 34 H 1.08999 * 109.46986 * 119.99621 * 2 1 3 35 35 H 1.08996 * 109.47388 * 64.10053 * 7 5 3 36 36 H 1.08997 * 109.46982 * 184.10398 * 7 5 3 37 37 H 1.08996 * 109.46777 * 304.10178 * 7 5 3 38 38 H 1.08996 * 111.00899 * 82.57147 * 8 5 3 39 39 H 1.09006 * 111.00253 * 206.38583 * 8 5 3 40 40 H 1.08999 * 110.36890 * 155.84608 * 9 8 5 41 41 H 1.08996 * 110.37165 * 278.17452 * 9 8 5 42 42 H 0.97004 * 120.00084 * 0.02562 * 15 13 11 43 43 H 1.09000 * 109.45951 * 35.02629 * 16 15 13 44 44 H 1.09006 * 109.49908 * 298.56429 * 17 16 15 45 45 H 1.08998 * 109.50124 * 58.66199 * 17 16 15 46 46 H 1.09005 * 109.58390 * 294.84856 * 18 17 16 47 47 H 1.08998 * 109.59030 * 174.41963 * 18 17 16 48 48 H 0.96998 * 120.00257 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.58642 * 293.81793 * 28 19 18 50 50 H 1.09006 * 109.58570 * 173.39590 * 28 19 18 51 51 H 1.08997 * 109.49855 * 301.33775 * 29 16 15 52 52 H 1.09001 * 109.49683 * 61.43270 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5964 1.9947 -0.8285 5 6 1.6827 2.1255 1.3370 6 1 0.7993 2.7540 1.2250 7 6 1.4678 1.0836 2.4366 8 6 2.9373 2.9896 1.6318 9 6 4.0719 2.0867 1.0868 10 7 3.5053 1.4549 -0.1187 11 6 4.2134 0.9682 -1.1570 12 8 3.6387 0.5523 -2.1416 13 6 5.7065 0.9409 -1.0961 14 8 6.2812 1.3565 -0.1115 15 7 6.4146 0.4548 -2.1346 16 6 7.8781 0.4275 -2.0746 17 6 8.4319 1.7831 -2.5191 18 6 9.9606 1.7625 -2.4221 19 7 10.4681 0.6205 -3.1950 20 6 11.4206 0.8006 -4.1621 21 1 11.4351 0.1601 -5.0316 22 6 12.3673 1.8065 -4.0252 23 7 12.4848 2.4484 -2.8821 24 14 13.4746 2.2491 -5.4630 25 1 12.6426 2.6935 -6.6100 26 1 14.3918 3.3459 -5.0620 27 1 14.2698 1.0595 -5.8598 28 6 9.9344 -0.7184 -2.9099 29 6 8.4060 -0.6699 -3.0015 30 1 -0.3633 0.4010 -0.9462 31 1 -0.3633 -1.0200 0.1257 32 1 -0.3633 0.6188 0.8204 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.4013 0.5523 2.6212 36 1 1.1461 1.5817 3.3512 37 1 0.7026 0.3747 2.1206 38 1 2.8965 3.9350 1.0909 39 1 3.0522 3.1590 2.7024 40 1 4.9430 2.6878 0.8262 41 1 4.3397 1.3282 1.8224 42 1 5.9552 0.1229 -2.9219 43 1 8.1958 0.2233 -1.0522 44 1 8.1354 1.9770 -3.5500 45 1 8.0370 2.5671 -1.8730 46 1 10.2592 1.6592 -1.3789 47 1 10.3653 2.6886 -2.8303 48 1 13.1461 3.1515 -2.7864 49 1 10.2309 -1.0239 -1.9065 50 1 10.3219 -1.4292 -3.6400 51 1 7.9927 -1.6319 -2.6986 52 1 8.1098 -0.4530 -4.0278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117281005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:08 Heat of formation + Delta-G solvation = -68.255586 kcal Electronic energy + Delta-G solvation = -30472.456678 eV Core-core repulsion = 26471.564776 eV Total energy + Delta-G solvation = -4000.891902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.10647 -40.66217 -39.20299 -38.78125 -36.22141 -34.89413 -33.95517 -33.29794 -31.83191 -31.30182 -29.31950 -28.41033 -27.16651 -25.65337 -24.38262 -23.93977 -23.46850 -22.67684 -21.44735 -20.78732 -20.00036 -19.00102 -18.49012 -18.14488 -17.34384 -17.13954 -16.73310 -16.34938 -16.14664 -15.77581 -15.49029 -15.35755 -15.16263 -14.86374 -14.72997 -14.68927 -14.26694 -14.11408 -14.08658 -13.46209 -13.25297 -13.19161 -13.01906 -12.92378 -12.75956 -12.70639 -12.61638 -12.59582 -12.56762 -12.15545 -12.08657 -12.02574 -11.88105 -11.62303 -11.57153 -11.43555 -11.41388 -11.29883 -10.59791 -10.56871 -10.21678 -9.85158 -8.66191 -7.87393 -5.39282 0.29730 1.19216 1.47705 1.49821 1.56431 2.07786 2.40595 2.50760 3.21273 3.30317 3.54250 3.55822 3.66153 3.80487 3.81807 4.00304 4.12331 4.18342 4.25797 4.26542 4.38512 4.43939 4.48300 4.60742 4.63516 4.67632 4.70326 4.76512 4.81210 4.90593 4.95407 4.97771 5.01691 5.07046 5.09179 5.10132 5.13650 5.20332 5.24900 5.26884 5.29423 5.34247 5.35179 5.45288 5.59269 5.63692 5.69753 6.00639 6.20759 6.40782 6.63456 6.91061 7.14396 7.83004 8.36781 9.19047 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026857 B = 0.002258 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.293260 B =12396.160795 C =12881.651539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.132 3.868 4 H 0.073 0.927 5 C -0.090 4.090 6 H 0.113 0.887 7 C -0.154 4.154 8 C -0.125 4.125 9 C 0.096 3.904 10 N -0.584 5.584 11 C 0.520 3.480 12 O -0.543 6.543 13 C 0.503 3.497 14 O -0.537 6.537 15 N -0.683 5.683 16 C 0.161 3.839 17 C -0.132 4.132 18 C 0.185 3.815 19 N -0.611 5.611 20 C -0.264 4.264 21 H 0.070 0.930 22 C -0.051 4.051 23 N -0.938 5.938 24 Si 0.971 3.029 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.273 1.273 28 C 0.144 3.856 29 C -0.125 4.125 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.416 0.584 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.051 0.949 46 H -0.004 1.004 47 H 0.057 0.943 48 H 0.250 0.750 49 H 0.017 0.983 50 H 0.068 0.932 51 H 0.091 0.909 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.684 -2.679 10.113 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.030 3.970 4 H 0.092 0.908 5 C -0.108 4.108 6 H 0.131 0.869 7 C -0.211 4.211 8 C -0.163 4.163 9 C -0.026 4.026 10 N -0.317 5.317 11 C 0.303 3.697 12 O -0.421 6.421 13 C 0.284 3.716 14 O -0.414 6.414 15 N -0.335 5.335 16 C 0.057 3.943 17 C -0.172 4.172 18 C 0.058 3.942 19 N -0.334 5.334 20 C -0.394 4.394 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.583 5.583 24 Si 0.799 3.201 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.199 1.199 28 C 0.018 3.982 29 C -0.164 4.164 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.253 0.747 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.014 0.986 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.086 0.914 51 H 0.109 0.891 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.403 -2.530 10.267 28.441 hybrid contribution 1.116 0.316 -1.086 1.589 sum -25.286 -2.213 9.181 26.992 Atomic orbital electron populations 1.21825 0.92976 1.02887 1.02700 1.21919 0.98033 0.95435 1.02010 1.22063 0.77669 0.97627 0.99645 0.90846 1.22251 0.99125 0.97085 0.92376 0.86939 1.22091 1.02222 0.98829 0.97918 1.22941 0.92558 0.97556 1.03200 1.22685 0.97837 0.96587 0.85488 1.48502 1.08375 1.56248 1.18596 1.19757 0.87630 0.79386 0.82926 1.90725 1.71767 1.48002 1.31602 1.20263 0.88391 0.79175 0.83811 1.90730 1.72041 1.46304 1.32365 1.45956 1.07391 1.61047 1.19137 1.20888 0.77028 0.96036 1.00310 1.22351 0.97901 0.96557 1.00427 1.20471 0.88918 0.92009 0.92765 1.44304 1.45021 1.02116 1.41974 1.19494 1.05243 1.16177 0.98491 0.91204 1.25977 0.98865 1.00984 0.98816 1.70139 1.36922 1.26460 1.24815 0.85293 0.78408 0.77432 0.78995 1.20316 1.22188 1.19884 1.21028 0.91714 0.87221 0.98261 1.22184 0.97097 0.97769 0.99394 0.92886 0.91815 0.90019 0.93693 0.90810 0.93492 0.90692 0.90369 0.90166 0.87383 0.90493 0.90785 0.74653 0.90973 0.92391 0.93042 0.98614 0.92466 0.94077 0.96471 0.91375 0.89068 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.14 71.98 0.66 -0.95 16 2 C -0.14 -2.23 5.00 30.60 0.15 -2.08 16 3 C 0.13 2.24 2.80 45.34 0.13 2.37 16 4 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.09 -0.92 2.92 -9.61 -0.03 -0.95 16 6 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 7 C -0.15 -1.30 7.76 71.98 0.56 -0.75 16 8 C -0.12 -1.48 6.58 31.99 0.21 -1.27 16 9 C 0.10 1.88 5.56 86.85 0.48 2.37 16 10 N -0.58 -13.30 3.07 -789.59 -2.42 -15.72 16 11 C 0.52 14.76 7.63 87.27 0.67 15.43 16 12 O -0.54 -16.94 15.66 -3.25 -0.05 -16.99 16 13 C 0.50 15.64 7.82 87.27 0.68 16.32 16 14 O -0.54 -18.75 13.58 -3.23 -0.04 -18.79 16 15 N -0.68 -20.38 5.07 -443.75 -2.25 -22.63 16 16 C 0.16 5.54 2.41 45.02 0.11 5.65 16 17 C -0.13 -5.32 5.65 30.67 0.17 -5.15 16 18 C 0.18 9.24 5.25 86.36 0.45 9.70 16 19 N -0.61 -30.73 2.98 -699.08 -2.09 -32.82 16 20 C -0.26 -14.45 9.58 84.03 0.80 -13.64 16 21 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 22 C -0.05 -2.87 5.05 84.86 0.43 -2.44 16 23 N -0.94 -56.16 11.07 21.65 0.24 -55.92 16 24 Si 0.97 44.97 29.57 68.60 2.03 47.00 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.14 5.79 6.52 86.36 0.56 6.35 16 29 C -0.12 -3.98 5.55 30.67 0.17 -3.81 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.59 5.81 -2.39 -0.01 0.58 16 33 H 0.04 1.01 6.89 -2.39 -0.02 0.99 16 34 H 0.07 1.16 6.21 -2.39 -0.01 1.14 16 35 H 0.05 0.53 7.07 -2.39 -0.02 0.51 16 36 H 0.07 0.42 8.14 -2.39 -0.02 0.41 16 37 H 0.08 0.59 4.52 -2.39 -0.01 0.58 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 0.89 8.04 -2.38 -0.02 0.87 16 40 H 0.08 1.87 6.49 -2.39 -0.02 1.85 16 41 H 0.07 1.45 7.66 -2.39 -0.02 1.43 16 42 H 0.42 11.02 8.07 -92.71 -0.75 10.27 16 43 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 44 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 45 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 47 H 0.06 3.23 6.13 -2.39 -0.01 3.22 16 48 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.07 2.61 7.93 -2.38 -0.02 2.59 16 51 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -68.68 393.78 1.80 -66.88 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.17 Total: 21.84 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 6.21 Total: 27.14 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -6.52 Total: -127.08 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.09 Total: -35.78 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -68.68 1.80 -66.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117281005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.371 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds