Wall clock time and date at job start Tue Mar 31 2020 20:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47331 * 2 1 4 4 H 1.09005 * 110.00095 * 52.63900 * 3 2 1 5 5 C 1.54340 * 109.99252 * 291.60605 * 3 2 1 6 6 H 1.09001 * 111.00294 * 100.12398 * 5 3 2 7 7 C 1.52998 * 110.51413 * 336.97794 * 5 3 2 8 8 C 1.55154 * 103.02369 * 218.66523 * 5 3 2 9 9 C 1.54912 * 101.57858 * 35.30303 * 8 5 3 10 10 N 1.47014 * 109.88489 * 173.73817 * 3 2 1 11 11 C 1.34773 * 125.64933 * 298.39512 * 10 3 2 12 12 O 1.21345 * 120.00062 * 355.52033 * 11 10 3 13 13 C 1.49450 * 120.00220 * 175.51881 * 11 10 3 14 14 O 1.21357 * 120.00090 * 0.02562 * 13 11 10 15 15 N 1.34773 * 120.00260 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00187 * 180.02562 * 15 13 11 17 17 C 1.53043 * 109.46310 * 154.99556 * 16 15 13 18 18 C 1.53194 * 109.33684 * 181.36439 * 17 16 15 19 19 N 1.46925 * 108.77640 * 305.41049 * 18 17 16 20 20 C 1.36932 * 120.60952 * 233.53287 * 19 18 17 21 21 H 1.08005 * 119.99875 * 161.31685 * 20 19 18 22 22 C 1.38811 * 119.99909 * 341.32612 * 20 19 18 23 23 N 1.31613 * 119.99964 * 331.01013 * 22 20 19 24 24 Si 1.86804 * 119.99683 * 151.01082 * 22 20 19 25 25 H 1.48497 * 109.46941 * 94.99989 * 24 22 20 26 26 H 1.48509 * 109.46954 * 214.99353 * 24 22 20 27 27 H 1.48489 * 109.47413 * 334.99548 * 24 22 20 28 28 C 1.46934 * 118.76204 * 53.55917 * 19 18 17 29 29 C 1.53042 * 109.45655 * 275.06335 * 16 15 13 30 30 H 1.08996 * 109.47477 * 182.65485 * 1 2 3 31 31 H 1.09000 * 109.47201 * 302.66313 * 1 2 3 32 32 H 1.09004 * 109.46917 * 62.66026 * 1 2 3 33 33 H 1.08995 * 109.47231 * 239.99745 * 2 1 3 34 34 H 1.08998 * 109.46646 * 119.99747 * 2 1 3 35 35 H 1.08997 * 109.46921 * 311.07394 * 7 5 3 36 36 H 1.09005 * 109.47287 * 71.07161 * 7 5 3 37 37 H 1.08995 * 109.47322 * 191.07085 * 7 5 3 38 38 H 1.09001 * 111.00407 * 277.23520 * 8 5 3 39 39 H 1.08994 * 111.00417 * 153.38247 * 8 5 3 40 40 H 1.09004 * 110.36398 * 204.14860 * 9 8 5 41 41 H 1.09001 * 110.36219 * 81.82946 * 9 8 5 42 42 H 0.96994 * 120.00264 * 359.97438 * 15 13 11 43 43 H 1.09000 * 109.45354 * 35.02408 * 16 15 13 44 44 H 1.08998 * 109.49808 * 301.33306 * 17 16 15 45 45 H 1.09001 * 109.49660 * 61.40074 * 17 16 15 46 46 H 1.09000 * 109.58303 * 65.17541 * 18 17 16 47 47 H 1.09002 * 109.58341 * 185.59131 * 18 17 16 48 48 H 0.96999 * 119.99913 * 179.97438 * 23 22 20 49 49 H 1.08995 * 109.58608 * 186.62439 * 28 19 18 50 50 H 1.09003 * 109.58526 * 66.19785 * 28 19 18 51 51 H 1.09001 * 109.49986 * 298.56070 * 29 16 15 52 52 H 1.09000 * 109.50082 * 58.63139 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5783 2.0011 0.8141 5 6 1.7125 2.1180 -1.3485 6 1 0.8287 2.7504 -1.2641 7 6 1.5202 1.0658 -2.4425 8 6 2.9759 2.9745 -1.6265 9 6 4.0958 2.0731 -1.0493 10 7 3.5024 1.4557 0.1508 11 6 4.1874 0.9774 1.2083 12 8 3.5908 0.5573 2.1779 13 6 5.6817 0.9644 1.1869 14 8 6.2783 1.3849 0.2174 15 7 6.3667 0.4856 2.2442 16 6 7.8315 0.4733 2.2235 17 6 8.3620 0.4965 3.6588 18 6 9.8936 0.5180 3.6332 19 7 10.3692 -0.6178 2.8317 20 6 11.2781 -1.5029 3.3472 21 1 11.3978 -2.4775 2.8973 22 6 12.0455 -1.1475 4.4479 23 7 12.3517 0.1154 4.6566 24 14 12.6434 -2.4618 5.6331 25 1 14.0173 -2.8805 5.2558 26 1 12.6542 -1.9153 7.0139 27 1 11.7343 -3.6342 5.5719 28 6 9.8518 -0.7859 1.4668 29 6 8.3207 -0.7932 1.5173 30 1 -0.3634 -1.0265 0.0476 31 1 -0.3633 0.5546 0.8651 32 1 -0.3633 0.4720 -0.9129 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3517 0.3615 -2.4193 36 1 0.5859 0.5308 -2.2720 37 1 1.4859 1.5556 -3.4156 38 1 2.9277 3.9255 -1.0962 39 1 3.1135 3.1319 -2.6962 40 1 4.9637 2.6738 -0.7772 41 1 4.3755 1.3062 -1.7715 42 1 5.8899 0.1498 3.0193 43 1 8.1943 1.3507 1.6880 44 1 7.9941 1.3870 4.1683 45 1 8.0195 -0.3930 4.1877 46 1 10.2384 1.4503 3.1859 47 1 10.2772 0.4345 4.6500 48 1 12.8876 0.3637 5.4260 49 1 10.2083 -1.7298 1.0546 50 1 10.1928 0.0399 0.8425 51 1 7.9791 -1.6708 2.0662 52 1 7.9229 -0.8210 0.5029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117281007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:16 Heat of formation + Delta-G solvation = -46.097229 kcal Electronic energy + Delta-G solvation = -30467.680797 eV Core-core repulsion = 26467.749754 eV Total energy + Delta-G solvation = -3999.931044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.09409 -39.56898 -38.04577 -37.34641 -34.74185 -34.00129 -32.65560 -32.13399 -30.24485 -29.52689 -28.72915 -27.57821 -25.61647 -24.47412 -23.42980 -22.48433 -22.28542 -21.43950 -20.19055 -19.51489 -19.06981 -17.76489 -17.11510 -16.71039 -16.38842 -15.80466 -15.55901 -15.23713 -14.84121 -14.52685 -14.36423 -13.98797 -13.86287 -13.70405 -13.56393 -13.42624 -13.06456 -12.83441 -12.66393 -12.58412 -12.49252 -12.42529 -12.10453 -11.92836 -11.68887 -11.51245 -11.43212 -11.25605 -10.94949 -10.86897 -10.80120 -10.69182 -10.68348 -10.56285 -10.34050 -10.09722 -9.79361 -9.67126 -9.35408 -9.00359 -8.83025 -8.40667 -6.85873 -5.85544 -3.11766 1.45827 2.25247 3.24522 3.37587 3.46682 3.47428 3.50580 4.07564 4.18436 4.38921 4.47885 4.50548 4.76894 4.81016 4.86019 4.98467 5.05199 5.16673 5.23749 5.27887 5.32962 5.34815 5.43115 5.50387 5.50939 5.55446 5.59220 5.63773 5.70816 5.78427 5.78937 5.84411 5.88485 5.97910 6.00740 6.15357 6.18928 6.24329 6.45326 6.46309 6.51785 6.70895 6.75243 6.91033 7.04173 7.25745 7.33361 7.54427 7.74033 7.79636 8.09522 8.34665 9.15138 9.82725 10.35596 11.24109 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.002241 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.982709 B =12491.697625 C =12826.410131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.141 3.859 4 H 0.079 0.921 5 C -0.099 4.099 6 H 0.090 0.910 7 C -0.152 4.152 8 C -0.134 4.134 9 C 0.101 3.899 10 N -0.589 5.589 11 C 0.521 3.479 12 O -0.522 6.522 13 C 0.505 3.495 14 O -0.521 6.521 15 N -0.690 5.690 16 C 0.149 3.851 17 C -0.146 4.146 18 C 0.169 3.831 19 N -0.593 5.593 20 C -0.253 4.253 21 H 0.071 0.929 22 C 0.000 4.000 23 N -0.894 5.894 24 Si 0.890 3.110 25 H -0.289 1.289 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.149 3.851 29 C -0.140 4.140 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.408 0.592 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.021 0.979 47 H 0.098 0.902 48 H 0.254 0.746 49 H 0.058 0.942 50 H 0.021 0.979 51 H 0.061 0.939 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.040 4.952 -12.408 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.038 3.962 4 H 0.097 0.903 5 C -0.118 4.118 6 H 0.108 0.892 7 C -0.209 4.209 8 C -0.172 4.172 9 C -0.021 4.021 10 N -0.324 5.324 11 C 0.304 3.696 12 O -0.398 6.398 13 C 0.285 3.715 14 O -0.397 6.397 15 N -0.341 5.341 16 C 0.046 3.954 17 C -0.186 4.186 18 C 0.042 3.958 19 N -0.316 5.316 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.198 4.198 23 N -0.538 5.538 24 Si 0.720 3.280 25 H -0.216 1.216 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.022 3.978 29 C -0.180 4.180 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.243 0.757 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.039 0.961 47 H 0.116 0.884 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.039 0.961 51 H 0.080 0.920 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.735 5.060 -12.373 27.241 hybrid contribution 0.104 -0.776 1.045 1.306 sum -23.631 4.284 -11.329 26.554 Atomic orbital electron populations 1.21847 0.94952 1.02035 1.01997 1.21985 0.96438 0.96066 1.03499 1.21777 0.79601 0.97024 0.97810 0.90331 1.22226 0.98713 0.97037 0.93860 0.89191 1.22050 1.02574 0.98720 0.97515 1.22956 0.94000 0.98231 1.01983 1.22593 0.96905 0.96519 0.86095 1.48343 1.07248 1.58331 1.18449 1.20065 0.88524 0.78794 0.82187 1.90741 1.70546 1.46215 1.32314 1.19943 0.87685 0.79710 0.84185 1.90720 1.70209 1.46026 1.32757 1.46208 1.08555 1.60869 1.18510 1.21231 0.75908 0.99579 0.98643 1.22535 1.01416 1.01171 0.93508 1.20839 0.86618 0.89230 0.99127 1.44222 1.47889 1.30086 1.09395 1.19187 1.14009 0.93882 1.11156 0.91160 1.24761 0.97769 0.95820 1.01439 1.70175 1.38633 1.15964 1.29060 0.86460 0.78385 0.81893 0.81308 1.21585 1.21519 1.20491 1.20842 0.90036 0.99159 0.87751 1.22400 0.99401 0.96963 0.99251 0.92461 0.92595 0.92039 0.90936 0.90722 0.92087 0.91398 0.92350 0.90488 0.89463 0.88344 0.90872 0.75665 0.89593 0.92434 0.91801 0.96125 0.88445 0.93614 0.92365 0.96084 0.91988 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.42 37.16 0.35 -0.65 16 2 C -0.14 -1.25 5.03 -26.73 -0.13 -1.39 16 3 C 0.14 1.27 2.77 -66.95 -0.19 1.08 16 4 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.10 -0.62 3.10 -88.78 -0.28 -0.90 16 6 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 7 C -0.15 -0.85 7.69 37.16 0.29 -0.56 16 8 C -0.13 -0.88 6.58 -24.58 -0.16 -1.05 16 9 C 0.10 0.98 5.62 -2.53 -0.01 0.97 16 10 N -0.59 -6.68 3.06 -163.52 -0.50 -7.18 16 11 C 0.52 7.29 7.64 -11.59 -0.09 7.20 16 12 O -0.52 -8.14 15.62 5.50 0.09 -8.05 16 13 C 0.50 7.66 7.82 -11.59 -0.09 7.57 16 14 O -0.52 -8.62 13.55 5.49 0.07 -8.54 16 15 N -0.69 -10.44 5.07 -54.19 -0.27 -10.71 16 16 C 0.15 2.57 2.42 -67.89 -0.16 2.40 16 17 C -0.15 -2.69 5.55 -26.61 -0.15 -2.83 16 18 C 0.17 3.90 5.49 -3.71 -0.02 3.88 16 19 N -0.59 -14.61 3.02 -172.31 -0.52 -15.13 16 20 C -0.25 -6.88 9.60 -15.06 -0.14 -7.03 16 21 H 0.07 1.88 7.91 -52.48 -0.42 1.46 16 22 C 0.00 0.01 4.69 -17.43 -0.08 -0.07 16 23 N -0.89 -25.62 11.33 55.49 0.63 -24.99 16 24 Si 0.89 21.40 29.64 -169.99 -5.04 16.36 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.15 3.12 6.52 -3.70 -0.02 3.10 16 29 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.32 5.59 -51.93 -0.29 0.03 16 33 H 0.07 0.62 5.86 -51.93 -0.30 0.32 16 34 H 0.07 0.86 6.83 -51.93 -0.35 0.50 16 35 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 36 H 0.07 0.34 5.27 -51.93 -0.27 0.07 16 37 H 0.06 0.27 8.13 -51.93 -0.42 -0.15 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.45 8.03 -51.93 -0.42 0.03 16 40 H 0.10 1.11 6.42 -51.93 -0.33 0.78 16 41 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 42 H 0.41 5.71 8.07 -40.82 -0.33 5.38 16 43 H 0.09 1.60 7.58 -51.93 -0.39 1.20 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 2.52 5.74 -51.93 -0.30 2.22 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.06 1.19 7.89 -51.93 -0.41 0.78 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 393.85 15.07 5.94 5.94 Total: -1.00 -30.55 393.85 -9.44 -39.99 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.78 Total: 3.26 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.05 Total: 9.06 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.67 Total: -58.01 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.16 Total: -16.60 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.04 Total: 16.36 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.55 -9.44 -39.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117281007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.110 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds