Wall clock time and date at job start Tue Mar 31 2020 20:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47331 * 2 1 4 4 H 1.09005 * 110.00095 * 52.63900 * 3 2 1 5 5 C 1.54340 * 109.99252 * 291.60605 * 3 2 1 6 6 H 1.09001 * 111.00294 * 100.12398 * 5 3 2 7 7 C 1.52998 * 110.51413 * 336.97794 * 5 3 2 8 8 C 1.55154 * 103.02369 * 218.66523 * 5 3 2 9 9 C 1.54912 * 101.57858 * 35.30303 * 8 5 3 10 10 N 1.47014 * 109.88489 * 173.73817 * 3 2 1 11 11 C 1.34773 * 125.64933 * 298.39512 * 10 3 2 12 12 O 1.21345 * 120.00062 * 355.52033 * 11 10 3 13 13 C 1.49450 * 120.00220 * 175.51881 * 11 10 3 14 14 O 1.21357 * 120.00090 * 0.02562 * 13 11 10 15 15 N 1.34773 * 120.00260 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00187 * 180.02562 * 15 13 11 17 17 C 1.53043 * 109.46310 * 154.99556 * 16 15 13 18 18 C 1.53194 * 109.33684 * 181.36439 * 17 16 15 19 19 N 1.46925 * 108.77640 * 305.41049 * 18 17 16 20 20 C 1.36932 * 120.60952 * 233.53287 * 19 18 17 21 21 H 1.08005 * 119.99875 * 161.31685 * 20 19 18 22 22 C 1.38811 * 119.99909 * 341.32612 * 20 19 18 23 23 N 1.31613 * 119.99964 * 331.01013 * 22 20 19 24 24 Si 1.86804 * 119.99683 * 151.01082 * 22 20 19 25 25 H 1.48497 * 109.46941 * 94.99989 * 24 22 20 26 26 H 1.48509 * 109.46954 * 214.99353 * 24 22 20 27 27 H 1.48489 * 109.47413 * 334.99548 * 24 22 20 28 28 C 1.46934 * 118.76204 * 53.55917 * 19 18 17 29 29 C 1.53042 * 109.45655 * 275.06335 * 16 15 13 30 30 H 1.08996 * 109.47477 * 182.65485 * 1 2 3 31 31 H 1.09000 * 109.47201 * 302.66313 * 1 2 3 32 32 H 1.09004 * 109.46917 * 62.66026 * 1 2 3 33 33 H 1.08995 * 109.47231 * 239.99745 * 2 1 3 34 34 H 1.08998 * 109.46646 * 119.99747 * 2 1 3 35 35 H 1.08997 * 109.46921 * 311.07394 * 7 5 3 36 36 H 1.09005 * 109.47287 * 71.07161 * 7 5 3 37 37 H 1.08995 * 109.47322 * 191.07085 * 7 5 3 38 38 H 1.09001 * 111.00407 * 277.23520 * 8 5 3 39 39 H 1.08994 * 111.00417 * 153.38247 * 8 5 3 40 40 H 1.09004 * 110.36398 * 204.14860 * 9 8 5 41 41 H 1.09001 * 110.36219 * 81.82946 * 9 8 5 42 42 H 0.96994 * 120.00264 * 359.97438 * 15 13 11 43 43 H 1.09000 * 109.45354 * 35.02408 * 16 15 13 44 44 H 1.08998 * 109.49808 * 301.33306 * 17 16 15 45 45 H 1.09001 * 109.49660 * 61.40074 * 17 16 15 46 46 H 1.09000 * 109.58303 * 65.17541 * 18 17 16 47 47 H 1.09002 * 109.58341 * 185.59131 * 18 17 16 48 48 H 0.96999 * 119.99913 * 179.97438 * 23 22 20 49 49 H 1.08995 * 109.58608 * 186.62439 * 28 19 18 50 50 H 1.09003 * 109.58526 * 66.19785 * 28 19 18 51 51 H 1.09001 * 109.49986 * 298.56070 * 29 16 15 52 52 H 1.09000 * 109.50082 * 58.63139 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5783 2.0011 0.8141 5 6 1.7125 2.1180 -1.3485 6 1 0.8287 2.7504 -1.2641 7 6 1.5202 1.0658 -2.4425 8 6 2.9759 2.9745 -1.6265 9 6 4.0958 2.0731 -1.0493 10 7 3.5024 1.4557 0.1508 11 6 4.1874 0.9774 1.2083 12 8 3.5908 0.5573 2.1779 13 6 5.6817 0.9644 1.1869 14 8 6.2783 1.3849 0.2174 15 7 6.3667 0.4856 2.2442 16 6 7.8315 0.4733 2.2235 17 6 8.3620 0.4965 3.6588 18 6 9.8936 0.5180 3.6332 19 7 10.3692 -0.6178 2.8317 20 6 11.2781 -1.5029 3.3472 21 1 11.3978 -2.4775 2.8973 22 6 12.0455 -1.1475 4.4479 23 7 12.3517 0.1154 4.6566 24 14 12.6434 -2.4618 5.6331 25 1 14.0173 -2.8805 5.2558 26 1 12.6542 -1.9153 7.0139 27 1 11.7343 -3.6342 5.5719 28 6 9.8518 -0.7859 1.4668 29 6 8.3207 -0.7932 1.5173 30 1 -0.3634 -1.0265 0.0476 31 1 -0.3633 0.5546 0.8651 32 1 -0.3633 0.4720 -0.9129 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3517 0.3615 -2.4193 36 1 0.5859 0.5308 -2.2720 37 1 1.4859 1.5556 -3.4156 38 1 2.9277 3.9255 -1.0962 39 1 3.1135 3.1319 -2.6962 40 1 4.9637 2.6738 -0.7772 41 1 4.3755 1.3062 -1.7715 42 1 5.8899 0.1498 3.0193 43 1 8.1943 1.3507 1.6880 44 1 7.9941 1.3870 4.1683 45 1 8.0195 -0.3930 4.1877 46 1 10.2384 1.4503 3.1859 47 1 10.2772 0.4345 4.6500 48 1 12.8876 0.3637 5.4260 49 1 10.2083 -1.7298 1.0546 50 1 10.1928 0.0399 0.8425 51 1 7.9791 -1.6708 2.0662 52 1 7.9229 -0.8210 0.5029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117281007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:15 Heat of formation + Delta-G solvation = -64.688629 kcal Electronic energy + Delta-G solvation = -30468.486981 eV Core-core repulsion = 26467.749754 eV Total energy + Delta-G solvation = -4000.737227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.10358 -40.66019 -39.21364 -38.79154 -36.23477 -34.84419 -33.97562 -33.30826 -31.90491 -31.28414 -29.35048 -28.38642 -27.16839 -25.65209 -24.41272 -23.97584 -23.46718 -22.68746 -21.41039 -20.80855 -20.01475 -19.05094 -18.43578 -18.13391 -17.43071 -17.04228 -16.65544 -16.32619 -16.16630 -15.87102 -15.43566 -15.34727 -15.18316 -14.87568 -14.79425 -14.69679 -14.26934 -14.14917 -14.07183 -13.49487 -13.29339 -13.22441 -13.14414 -13.05905 -12.72028 -12.69922 -12.57587 -12.55983 -12.50196 -12.28835 -12.06070 -11.99051 -11.88785 -11.59788 -11.59117 -11.40442 -11.36784 -11.28913 -10.57969 -10.49895 -10.21870 -9.84622 -8.86358 -7.93144 -5.21725 0.30035 1.19007 1.46347 1.50431 1.60371 2.08199 2.40839 2.52451 3.18565 3.23688 3.54841 3.56659 3.63009 3.80799 3.81035 3.95811 4.12705 4.18213 4.25105 4.25965 4.40288 4.40436 4.49315 4.59571 4.60681 4.67603 4.72659 4.75365 4.79342 4.90985 4.92405 4.94590 4.99053 5.05597 5.09172 5.09408 5.14641 5.18874 5.24684 5.26164 5.28805 5.34367 5.35788 5.44644 5.60545 5.61086 5.68854 6.00967 6.21414 6.31795 6.62853 6.90264 7.10294 7.83763 8.32981 9.15278 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.002241 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.982709 B =12491.697625 C =12826.410131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.133 3.867 4 H 0.074 0.926 5 C -0.090 4.090 6 H 0.113 0.887 7 C -0.150 4.150 8 C -0.124 4.124 9 C 0.095 3.905 10 N -0.584 5.584 11 C 0.519 3.481 12 O -0.544 6.544 13 C 0.505 3.495 14 O -0.535 6.535 15 N -0.685 5.685 16 C 0.161 3.839 17 C -0.131 4.131 18 C 0.172 3.828 19 N -0.610 5.610 20 C -0.264 4.264 21 H 0.071 0.929 22 C -0.049 4.049 23 N -0.926 5.926 24 Si 0.956 3.044 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.272 1.272 28 C 0.147 3.853 29 C -0.126 4.126 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.415 0.585 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.001 0.999 47 H 0.069 0.931 48 H 0.251 0.749 49 H 0.060 0.940 50 H 0.016 0.984 51 H 0.063 0.937 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.565 4.908 -13.718 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.031 3.969 4 H 0.092 0.908 5 C -0.109 4.109 6 H 0.131 0.869 7 C -0.207 4.207 8 C -0.162 4.162 9 C -0.027 4.027 10 N -0.317 5.317 11 C 0.302 3.698 12 O -0.422 6.422 13 C 0.286 3.714 14 O -0.412 6.412 15 N -0.336 5.336 16 C 0.058 3.942 17 C -0.170 4.170 18 C 0.046 3.954 19 N -0.333 5.333 20 C -0.394 4.394 21 H 0.088 0.912 22 C -0.244 4.244 23 N -0.573 5.573 24 Si 0.784 3.216 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.197 1.197 28 C 0.021 3.979 29 C -0.166 4.166 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.252 0.748 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.019 0.981 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.079 0.921 50 H 0.034 0.966 51 H 0.082 0.918 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.305 5.016 -13.724 30.091 hybrid contribution 0.894 -0.725 1.344 1.769 sum -25.411 4.291 -12.380 28.590 Atomic orbital electron populations 1.21821 0.93051 1.02482 1.02949 1.21938 0.98049 0.95585 1.02039 1.22050 0.77894 0.97457 0.99520 0.90841 1.22260 0.99304 0.97136 0.92160 0.86900 1.22049 1.02357 0.98346 0.97958 1.22961 0.92559 0.97602 1.03088 1.22711 0.97666 0.96825 0.85472 1.48506 1.08517 1.56738 1.17927 1.19778 0.87821 0.79379 0.82839 1.90731 1.70575 1.47654 1.33277 1.20210 0.88419 0.79054 0.83716 1.90718 1.70733 1.46522 1.33268 1.45978 1.07518 1.61077 1.19051 1.20889 0.77185 0.98704 0.97469 1.22275 0.97783 1.02358 0.94614 1.20670 0.89623 0.88022 0.97083 1.44477 1.47806 1.30050 1.10972 1.19498 1.14107 0.94311 1.11459 0.91154 1.25472 0.98588 0.97597 1.02776 1.70291 1.39848 1.17698 1.29418 0.85446 0.77782 0.79527 0.78859 1.21531 1.21740 1.19727 1.20949 0.91957 0.99018 0.86024 1.22206 0.96963 0.97351 1.00041 0.92218 0.92795 0.90003 0.90679 0.93866 0.93530 0.90617 0.90787 0.90052 0.87328 0.90114 0.90886 0.74782 0.90783 0.90405 0.91426 0.98082 0.91312 0.93949 0.92120 0.96593 0.91814 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.42 71.98 0.68 -0.97 16 2 C -0.14 -2.29 5.03 30.59 0.15 -2.14 16 3 C 0.13 2.18 2.77 45.35 0.13 2.31 16 4 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 5 C -0.09 -0.85 3.10 -9.60 -0.03 -0.88 16 6 H 0.11 0.65 8.14 -2.39 -0.02 0.64 16 7 C -0.15 -1.20 7.69 71.98 0.55 -0.65 16 8 C -0.12 -1.31 6.58 31.99 0.21 -1.10 16 9 C 0.09 1.73 5.62 86.86 0.49 2.22 16 10 N -0.58 -12.76 3.06 -789.61 -2.42 -15.17 16 11 C 0.52 14.36 7.64 87.27 0.67 15.03 16 12 O -0.54 -16.92 15.62 -3.23 -0.05 -16.97 16 13 C 0.51 15.10 7.82 87.27 0.68 15.78 16 14 O -0.54 -17.51 13.55 -3.27 -0.04 -17.55 16 15 N -0.68 -20.17 5.07 -443.73 -2.25 -22.42 16 16 C 0.16 5.46 2.42 45.02 0.11 5.57 16 17 C -0.13 -4.74 5.55 30.67 0.17 -4.57 16 18 C 0.17 8.15 5.49 86.36 0.47 8.63 16 19 N -0.61 -30.42 3.02 -699.07 -2.11 -32.53 16 20 C -0.26 -14.48 9.60 84.03 0.81 -13.67 16 21 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 22 C -0.05 -2.71 4.69 84.86 0.40 -2.31 16 23 N -0.93 -54.34 11.33 21.65 0.25 -54.10 16 24 Si 0.96 44.54 29.64 68.60 2.03 46.57 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 28 C 0.15 6.15 6.52 86.36 0.56 6.71 16 29 C -0.13 -4.41 5.65 30.67 0.17 -4.24 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.59 5.59 -2.38 -0.01 0.58 16 33 H 0.07 1.19 5.86 -2.39 -0.01 1.18 16 34 H 0.04 1.00 6.83 -2.39 -0.02 0.98 16 35 H 0.05 0.52 6.56 -2.39 -0.02 0.51 16 36 H 0.08 0.50 5.27 -2.38 -0.01 0.48 16 37 H 0.07 0.40 8.13 -2.39 -0.02 0.38 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 0.74 8.03 -2.39 -0.02 0.72 16 40 H 0.08 1.78 6.42 -2.39 -0.02 1.77 16 41 H 0.07 1.34 7.90 -2.39 -0.02 1.32 16 42 H 0.42 11.23 8.07 -92.71 -0.75 10.49 16 43 H 0.07 2.73 7.58 -2.39 -0.02 2.72 16 44 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.07 3.66 5.74 -2.39 -0.01 3.65 16 48 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 49 H 0.06 2.47 7.89 -2.39 -0.02 2.45 16 50 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -66.83 393.85 1.79 -65.04 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.17 Total: 21.41 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 6.22 Total: 25.73 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -6.54 Total: -124.22 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.09 Total: -34.53 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.83 1.79 -65.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117281007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.352 kcal (2) G-P(sol) polarization free energy of solvation -66.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds