Wall clock time and date at job start Tue Mar 31 2020 20:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47419 * 2 1 4 4 H 1.09001 * 109.47006 * 54.99887 * 3 2 1 5 5 C 1.52992 * 109.47201 * 294.99924 * 3 2 1 6 6 C 1.50694 * 109.47049 * 174.99538 * 3 2 1 7 7 O 1.21280 * 120.00532 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00094 * 180.02562 * 6 3 2 9 9 C 1.46499 * 120.00194 * 180.02562 * 8 6 3 10 10 C 1.53952 * 113.57988 * 154.99954 * 9 8 6 11 11 C 1.52908 * 86.78255 * 89.87015 * 10 9 8 12 12 C 1.52908 * 121.13680 * 150.62093 * 11 10 9 13 13 C 1.53944 * 86.78342 * 100.81750 * 12 11 10 14 14 N 1.46904 * 113.57707 * 139.33844 * 13 12 11 15 15 C 1.46899 * 111.00029 * 155.00020 * 14 13 12 16 16 C 1.50703 * 109.47107 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00016 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00108 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00333 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99712 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99793 * 179.97438 * 21 19 18 23 23 Si 1.86790 * 120.00276 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47428 * 90.00011 * 23 21 19 25 25 H 1.48508 * 109.47300 * 209.99991 * 23 21 19 26 26 H 1.48504 * 109.47448 * 329.99935 * 23 21 19 27 27 C 1.52906 * 121.13452 * 259.17875 * 11 10 9 28 28 C 1.52906 * 88.04439 * 24.89659 * 11 10 9 29 29 H 1.09000 * 109.46787 * 59.99951 * 1 2 3 30 30 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47215 * 300.00383 * 1 2 3 32 32 H 1.09001 * 109.47215 * 239.99617 * 2 1 3 33 33 H 1.09000 * 109.46787 * 120.00049 * 2 1 3 34 34 H 1.09001 * 109.47074 * 59.99707 * 5 3 2 35 35 H 1.08997 * 109.47184 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47111 * 299.99899 * 5 3 2 37 37 H 0.96996 * 119.99768 * 0.02562 * 8 6 3 38 38 H 1.08998 * 112.87795 * 23.85700 * 9 8 6 39 39 H 1.08997 * 113.66234 * 335.39607 * 10 9 8 40 40 H 1.09001 * 113.74926 * 204.35379 * 10 9 8 41 41 H 1.09004 * 113.66012 * 346.34393 * 12 11 10 42 42 H 1.08998 * 113.66011 * 215.29355 * 12 11 10 43 43 H 1.09003 * 113.58176 * 270.04711 * 13 12 11 44 44 H 1.00902 * 111.00190 * 31.03720 * 14 13 12 45 45 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 46 46 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 47 47 H 0.97005 * 119.99463 * 359.97438 * 18 16 15 48 48 H 0.96996 * 120.00229 * 180.02562 * 22 21 19 49 49 H 1.08998 * 113.66200 * 144.70772 * 27 11 10 50 50 H 1.08998 * 113.66586 * 13.64895 * 27 11 10 51 51 H 1.09007 * 113.66078 * 89.57474 * 28 11 10 52 52 H 1.09001 * 113.66710 * 220.63222 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5419 1.4442 0.1239 7 8 4.1451 0.3950 0.2039 8 7 4.2150 2.6117 0.1460 9 6 5.6751 2.6133 0.2659 10 6 6.3392 3.8754 -0.3141 11 6 6.1866 4.4905 1.0774 12 6 7.1712 5.5425 1.5892 13 6 6.1029 6.5913 1.2306 14 7 5.9729 7.6622 2.2278 15 6 5.4330 8.8854 1.6193 16 6 5.3136 9.9588 2.6703 17 8 5.6450 9.7274 3.8138 18 7 4.8374 11.1756 2.3398 19 6 4.7292 12.1522 3.2958 20 1 5.0251 11.9465 4.3139 21 6 4.2388 13.4068 2.9549 22 7 4.1346 14.3428 3.8714 23 14 3.7276 13.7629 1.1939 24 1 2.2916 13.4279 1.0179 25 1 3.9398 15.2027 0.8984 26 1 4.5450 12.9413 0.2653 27 6 5.0567 5.4729 1.3880 28 6 6.1790 3.0713 1.6466 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5491 2.1252 -1.3969 35 1 1.9984 3.1543 -1.3071 36 1 2.0700 1.5875 -2.1491 37 1 3.7326 3.4508 0.0824 38 1 6.1296 1.6842 -0.0780 39 1 5.7424 4.3713 -1.0795 40 1 7.3761 3.7267 -0.6154 41 1 8.0788 5.6201 0.9905 42 1 7.3720 5.4703 2.6581 43 1 6.1883 6.9701 0.2121 44 1 6.8559 7.8432 2.6814 45 1 6.1024 9.2237 0.8284 46 1 4.4491 8.6782 1.1986 47 1 4.5720 11.3605 1.4253 48 1 3.7919 15.2185 3.6335 49 1 4.6632 5.3812 2.4003 50 1 4.2752 5.4951 0.6286 51 1 7.1709 2.6952 1.8972 52 1 5.4542 2.9250 2.4474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120651616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:19 Heat of formation + Delta-G solvation = -40.209264 kcal Electronic energy + Delta-G solvation = -28892.722244 eV Core-core repulsion = 24893.046522 eV Total energy + Delta-G solvation = -3999.675723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.22798 -39.78531 -38.42604 -36.57699 -35.68505 -34.16999 -33.61968 -32.09225 -31.62499 -29.93995 -26.93007 -26.20263 -25.99571 -25.73005 -24.17417 -23.19598 -21.98646 -20.39464 -20.15591 -19.39296 -18.45208 -18.17464 -17.49246 -16.45280 -16.25134 -15.91868 -15.60511 -15.41831 -15.13591 -14.87555 -14.75143 -14.57475 -14.04055 -13.90985 -13.70244 -13.21890 -13.13687 -13.01564 -12.90774 -12.74035 -12.55166 -12.45197 -12.28579 -12.09005 -12.02969 -11.93899 -11.78884 -11.44274 -11.23556 -11.18653 -11.16347 -11.07444 -10.61554 -10.54433 -10.38161 -10.10505 -9.98912 -9.96681 -9.58752 -9.30501 -8.58186 -8.20931 -8.14952 -6.32392 -3.83798 2.33576 2.80614 3.00432 3.05030 3.13255 3.72968 4.00872 4.08687 4.14929 4.26236 4.29593 4.33040 4.37619 4.47194 4.54643 4.60170 4.75003 4.88758 4.95697 4.97008 5.08502 5.13719 5.17128 5.21266 5.27761 5.39362 5.40084 5.45273 5.48936 5.53375 5.55310 5.58887 5.62248 5.68682 5.71755 5.72416 5.78053 5.81633 5.84444 5.87159 5.91661 5.96832 6.16403 6.23517 6.36686 7.17611 7.19715 7.56855 7.58550 7.93092 8.13427 8.58591 8.93803 9.41201 9.81678 10.80780 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.001973 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.249584 B =14187.913494 C =15433.565035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.113 4.113 4 H 0.099 0.901 5 C -0.146 4.146 6 C 0.519 3.481 7 O -0.541 6.541 8 N -0.710 5.710 9 C 0.121 3.879 10 C -0.122 4.122 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.062 3.938 14 N -0.656 5.656 15 C 0.048 3.952 16 C 0.449 3.551 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.100 4.100 28 C -0.135 4.135 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.401 0.599 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.352 0.648 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.095 0.905 50 H 0.059 0.941 51 H 0.091 0.909 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 -25.551 -14.610 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.134 4.134 4 H 0.117 0.883 5 C -0.204 4.204 6 C 0.306 3.694 7 O -0.418 6.418 8 N -0.361 5.361 9 C 0.016 3.984 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.165 4.165 13 C -0.048 4.048 14 N -0.289 5.289 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.446 6.446 18 N -0.231 5.231 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.139 4.139 28 C -0.174 4.174 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.237 0.763 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.172 0.828 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.114 0.886 50 H 0.078 0.922 51 H 0.109 0.891 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.060 -26.438 -13.480 29.748 hybrid contribution 0.089 1.432 -1.873 2.359 sum -1.972 -25.006 -15.353 29.409 Atomic orbital electron populations 1.21853 0.95385 1.01971 1.01989 1.21337 0.95431 0.94051 1.03460 1.21380 0.91656 0.99623 1.00750 0.88329 1.21834 1.02601 1.00166 0.95753 1.20735 0.90023 0.83470 0.75161 1.90692 1.70322 1.31460 1.49291 1.45743 1.06902 1.08856 1.74646 1.21833 0.80341 0.99172 0.97078 1.23067 1.01592 0.95483 0.95881 1.22356 0.98911 0.93151 0.96288 1.23050 0.96472 0.94916 1.02075 1.22993 0.96648 0.90697 0.94508 1.60213 1.33830 1.06267 1.28594 1.21763 1.00695 0.90515 0.95551 1.19747 0.83969 0.83147 0.89631 1.90564 1.52722 1.80554 1.20801 1.42215 1.58778 1.11467 1.10606 1.19432 1.40701 0.89858 0.93373 0.86295 1.25047 0.97645 0.95546 0.97996 1.69621 1.45284 1.04185 1.33043 0.86664 0.79478 0.78835 0.84341 1.19600 1.20190 1.19569 1.22830 0.95167 0.93466 1.02389 1.23228 1.01923 0.95172 0.97055 0.92407 0.92435 0.92581 0.91378 0.91124 0.90995 0.92158 0.92057 0.76325 0.88184 0.90811 0.88527 0.91483 0.88924 0.91271 0.82762 0.93858 0.89623 0.79722 0.91616 0.88629 0.92202 0.89101 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.67 37.16 0.36 -0.47 16 2 C -0.10 -0.75 4.75 -26.73 -0.13 -0.87 16 3 C -0.11 -0.75 2.72 -91.78 -0.25 -1.00 16 4 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -0.75 8.84 37.15 0.33 -0.42 16 6 C 0.52 4.85 7.15 -10.99 -0.08 4.77 16 7 O -0.54 -7.11 15.52 5.56 0.09 -7.02 16 8 N -0.71 -5.44 5.15 -52.85 -0.27 -5.71 16 9 C 0.12 0.97 4.32 -66.95 -0.29 0.69 16 10 C -0.12 -0.83 7.59 -26.28 -0.20 -1.03 16 11 C -0.11 -0.85 1.02 -154.72 -0.16 -1.01 16 12 C -0.13 -1.17 7.41 -26.29 -0.19 -1.37 16 13 C 0.06 0.67 4.14 -66.73 -0.28 0.39 16 14 N -0.66 -9.73 6.18 -106.95 -0.66 -10.39 16 15 C 0.05 0.77 6.01 -4.98 -0.03 0.74 16 16 C 0.45 10.10 7.82 -10.98 -0.09 10.01 16 17 O -0.56 -15.10 15.78 5.55 0.09 -15.01 16 18 N -0.59 -13.98 5.09 -10.97 -0.06 -14.03 16 19 C -0.30 -8.60 10.16 -14.94 -0.15 -8.76 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 23 Si 0.88 19.20 27.73 -169.99 -4.71 14.49 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 27 C -0.10 -0.95 7.18 -26.29 -0.19 -1.14 16 28 C -0.14 -1.12 7.64 -26.28 -0.20 -1.32 16 29 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.59 7.96 -51.93 -0.41 0.18 16 34 H 0.07 0.30 6.56 -51.93 -0.34 -0.04 16 35 H 0.06 0.26 7.57 -51.93 -0.39 -0.13 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 2.44 6.99 -40.82 -0.29 2.15 16 38 H 0.10 0.94 7.47 -51.93 -0.39 0.55 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 44 H 0.35 5.48 8.25 -39.29 -0.32 5.16 16 45 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 51 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 414.19 15.07 6.24 6.24 Total: -1.00 -33.95 414.19 -9.14 -43.09 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -8.99 Total: 13.03 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.64 Total: 0.22 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.21 Total: -55.04 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.17 Total: -22.03 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.95 -9.14 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120651616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.885 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds