Wall clock time and date at job start Tue Mar 31 2020 20:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47419 * 2 1 4 4 H 1.09001 * 109.47006 * 54.99887 * 3 2 1 5 5 C 1.52992 * 109.47201 * 294.99924 * 3 2 1 6 6 C 1.50694 * 109.47049 * 174.99538 * 3 2 1 7 7 O 1.21280 * 120.00532 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00094 * 180.02562 * 6 3 2 9 9 C 1.46499 * 120.00194 * 180.02562 * 8 6 3 10 10 C 1.53952 * 113.57988 * 154.99954 * 9 8 6 11 11 C 1.52908 * 86.78255 * 89.87015 * 10 9 8 12 12 C 1.52908 * 121.13680 * 150.62093 * 11 10 9 13 13 C 1.53944 * 86.78342 * 100.81750 * 12 11 10 14 14 N 1.46904 * 113.57707 * 139.33844 * 13 12 11 15 15 C 1.46899 * 111.00029 * 155.00020 * 14 13 12 16 16 C 1.50703 * 109.47107 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00016 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00108 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00333 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99712 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99793 * 179.97438 * 21 19 18 23 23 Si 1.86790 * 120.00276 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47428 * 90.00011 * 23 21 19 25 25 H 1.48508 * 109.47300 * 209.99991 * 23 21 19 26 26 H 1.48504 * 109.47448 * 329.99935 * 23 21 19 27 27 C 1.52906 * 121.13452 * 259.17875 * 11 10 9 28 28 C 1.52906 * 88.04439 * 24.89659 * 11 10 9 29 29 H 1.09000 * 109.46787 * 59.99951 * 1 2 3 30 30 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47215 * 300.00383 * 1 2 3 32 32 H 1.09001 * 109.47215 * 239.99617 * 2 1 3 33 33 H 1.09000 * 109.46787 * 120.00049 * 2 1 3 34 34 H 1.09001 * 109.47074 * 59.99707 * 5 3 2 35 35 H 1.08997 * 109.47184 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47111 * 299.99899 * 5 3 2 37 37 H 0.96996 * 119.99768 * 0.02562 * 8 6 3 38 38 H 1.08998 * 112.87795 * 23.85700 * 9 8 6 39 39 H 1.08997 * 113.66234 * 335.39607 * 10 9 8 40 40 H 1.09001 * 113.74926 * 204.35379 * 10 9 8 41 41 H 1.09004 * 113.66012 * 346.34393 * 12 11 10 42 42 H 1.08998 * 113.66011 * 215.29355 * 12 11 10 43 43 H 1.09003 * 113.58176 * 270.04711 * 13 12 11 44 44 H 1.00902 * 111.00190 * 31.03720 * 14 13 12 45 45 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 46 46 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 47 47 H 0.97005 * 119.99463 * 359.97438 * 18 16 15 48 48 H 0.96996 * 120.00229 * 180.02562 * 22 21 19 49 49 H 1.08998 * 113.66200 * 144.70772 * 27 11 10 50 50 H 1.08998 * 113.66586 * 13.64895 * 27 11 10 51 51 H 1.09007 * 113.66078 * 89.57474 * 28 11 10 52 52 H 1.09001 * 113.66710 * 220.63222 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5419 1.4442 0.1239 7 8 4.1451 0.3950 0.2039 8 7 4.2150 2.6117 0.1460 9 6 5.6751 2.6133 0.2659 10 6 6.3392 3.8754 -0.3141 11 6 6.1866 4.4905 1.0774 12 6 7.1712 5.5425 1.5892 13 6 6.1029 6.5913 1.2306 14 7 5.9729 7.6622 2.2278 15 6 5.4330 8.8854 1.6193 16 6 5.3136 9.9588 2.6703 17 8 5.6450 9.7274 3.8138 18 7 4.8374 11.1756 2.3398 19 6 4.7292 12.1522 3.2958 20 1 5.0251 11.9465 4.3139 21 6 4.2388 13.4068 2.9549 22 7 4.1346 14.3428 3.8714 23 14 3.7276 13.7629 1.1939 24 1 2.2916 13.4279 1.0179 25 1 3.9398 15.2027 0.8984 26 1 4.5450 12.9413 0.2653 27 6 5.0567 5.4729 1.3880 28 6 6.1790 3.0713 1.6466 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5491 2.1252 -1.3969 35 1 1.9984 3.1543 -1.3071 36 1 2.0700 1.5875 -2.1491 37 1 3.7326 3.4508 0.0824 38 1 6.1296 1.6842 -0.0780 39 1 5.7424 4.3713 -1.0795 40 1 7.3761 3.7267 -0.6154 41 1 8.0788 5.6201 0.9905 42 1 7.3720 5.4703 2.6581 43 1 6.1883 6.9701 0.2121 44 1 6.8559 7.8432 2.6814 45 1 6.1024 9.2237 0.8284 46 1 4.4491 8.6782 1.1986 47 1 4.5720 11.3605 1.4253 48 1 3.7919 15.2185 3.6335 49 1 4.6632 5.3812 2.4003 50 1 4.2752 5.4951 0.6286 51 1 7.1709 2.6952 1.8972 52 1 5.4542 2.9250 2.4474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120651616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:18 Heat of formation + Delta-G solvation = -65.412513 kcal Electronic energy + Delta-G solvation = -28893.815139 eV Core-core repulsion = 24893.046522 eV Total energy + Delta-G solvation = -4000.768617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.92787 -40.57433 -40.15505 -37.45425 -36.32137 -36.01307 -34.68907 -33.74263 -32.91182 -30.42448 -28.45163 -26.83470 -26.69957 -26.31204 -25.72121 -24.03782 -22.70389 -21.33726 -21.11110 -20.78115 -20.25619 -18.95531 -18.13833 -17.76748 -17.12833 -16.97259 -16.66829 -16.48942 -16.30934 -15.98091 -15.61284 -15.49907 -15.20359 -14.98871 -14.54237 -14.40620 -14.27372 -14.14278 -13.90730 -13.70353 -13.54062 -13.29695 -13.10680 -12.97556 -12.95866 -12.82937 -12.57023 -12.49012 -12.40819 -12.19836 -11.97440 -11.92973 -11.71483 -11.59445 -11.50869 -11.23842 -11.09093 -10.85458 -10.70234 -10.38181 -10.24427 -9.99328 -9.27055 -8.40844 -6.01960 1.30589 1.36626 1.45493 1.62891 1.96686 2.18836 2.23817 2.77225 3.15457 3.36871 3.49175 3.60196 3.66079 3.71103 3.84029 3.87409 3.93395 3.98917 4.03716 4.18879 4.39692 4.40636 4.49324 4.53029 4.56983 4.60334 4.64383 4.73847 4.82576 4.86260 4.90850 4.94332 4.98130 4.98584 5.02159 5.04883 5.10895 5.12070 5.17513 5.22745 5.36394 5.37549 5.48234 5.50727 5.55493 5.70064 5.93474 6.19565 6.43375 6.56804 6.60673 6.88749 7.26649 7.40474 7.97574 8.76884 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.001973 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.249584 B =14187.913494 C =15433.565035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.109 4.109 4 H 0.112 0.888 5 C -0.142 4.142 6 C 0.514 3.486 7 O -0.586 6.586 8 N -0.700 5.700 9 C 0.117 3.883 10 C -0.106 4.106 11 C -0.095 4.095 12 C -0.125 4.125 13 C 0.060 3.940 14 N -0.677 5.677 15 C 0.063 3.937 16 C 0.447 3.553 17 O -0.616 6.616 18 N -0.591 5.591 19 C -0.329 4.329 20 H 0.053 0.947 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.230 1.230 27 C -0.100 4.100 28 C -0.138 4.138 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.412 0.588 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.343 0.657 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.095 0.905 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 -25.713 -18.965 32.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.130 4.130 4 H 0.130 0.870 5 C -0.200 4.200 6 C 0.302 3.698 7 O -0.466 6.466 8 N -0.351 5.351 9 C 0.012 3.988 10 C -0.144 4.144 11 C -0.095 4.095 12 C -0.163 4.163 13 C -0.050 4.050 14 N -0.309 5.309 15 C -0.069 4.069 16 C 0.235 3.765 17 O -0.501 6.501 18 N -0.233 5.233 19 C -0.459 4.459 20 H 0.071 0.929 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.181 1.181 25 H -0.201 1.201 26 H -0.153 1.153 27 C -0.138 4.138 28 C -0.177 4.177 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.249 0.751 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.163 0.837 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.113 0.887 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.986 -26.604 -17.858 32.180 hybrid contribution 0.439 1.407 -0.337 1.512 sum -2.548 -25.196 -18.195 31.184 Atomic orbital electron populations 1.21823 0.93764 1.02359 1.02773 1.21309 0.96771 0.94270 1.01920 1.21412 0.89646 0.99585 1.02344 0.86983 1.21837 1.03469 1.00448 0.94218 1.21263 0.91149 0.83127 0.74220 1.90671 1.71388 1.33073 1.51517 1.45688 1.06873 1.08920 1.73624 1.21832 0.80583 0.99379 0.97039 1.23028 1.02436 0.93780 0.95120 1.22237 0.97739 0.92327 0.97227 1.23018 0.97080 0.94760 1.01474 1.23173 0.97764 0.89610 0.94419 1.60238 1.33676 1.06592 1.30395 1.21692 1.03119 0.88626 0.93487 1.21094 0.81272 0.83748 0.90403 1.90544 1.54212 1.81541 1.23788 1.42036 1.59526 1.11090 1.10612 1.19001 1.42606 0.92116 0.92139 0.92853 1.26160 0.96655 0.94332 1.04436 1.69810 1.46247 1.04997 1.36519 0.85339 0.80047 0.79076 0.76881 1.18068 1.20110 1.15294 1.22785 0.95865 0.93344 1.01834 1.23253 1.01828 0.95757 0.96817 0.91203 0.92348 0.92109 0.92539 0.93149 0.89633 0.90882 0.92753 0.75094 0.89670 0.89375 0.87204 0.90044 0.90536 0.89177 0.83750 0.90575 0.86883 0.77427 0.91158 0.90908 0.90109 0.88675 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 71.98 0.70 -0.71 16 2 C -0.10 -1.46 4.75 30.59 0.15 -1.32 16 3 C -0.11 -1.30 2.72 -11.54 -0.03 -1.34 16 4 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 5 C -0.14 -1.10 8.84 71.98 0.64 -0.46 16 6 C 0.51 9.28 7.15 87.65 0.63 9.90 16 7 O -0.59 -15.78 15.52 -3.03 -0.05 -15.82 16 8 N -0.70 -9.56 5.15 -439.52 -2.26 -11.82 16 9 C 0.12 1.71 4.32 45.63 0.20 1.91 16 10 C -0.11 -1.08 7.59 30.89 0.23 -0.85 16 11 C -0.09 -1.29 1.02 -52.32 -0.05 -1.34 16 12 C -0.13 -2.04 7.41 30.88 0.23 -1.81 16 13 C 0.06 1.09 4.14 45.55 0.19 1.28 16 14 N -0.68 -18.79 6.18 -492.28 -3.04 -21.83 16 15 C 0.06 1.83 6.01 85.56 0.51 2.34 16 16 C 0.45 19.86 7.82 87.66 0.69 20.55 16 17 O -0.62 -34.13 15.78 -3.05 -0.05 -34.18 16 18 N -0.59 -27.46 5.09 -306.99 -1.56 -29.02 16 19 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 20 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 21 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 22 N -0.94 -56.23 13.96 21.66 0.30 -55.93 16 23 Si 0.97 38.07 27.73 68.60 1.90 39.97 16 24 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 25 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 27 C -0.10 -1.63 7.18 30.88 0.22 -1.41 16 28 C -0.14 -2.15 7.64 30.88 0.24 -1.92 16 29 H 0.07 0.49 6.56 -2.39 -0.02 0.48 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.89 7.96 -2.39 -0.02 0.87 16 34 H 0.08 0.45 6.56 -2.39 -0.02 0.44 16 35 H 0.07 0.38 7.57 -2.39 -0.02 0.37 16 36 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.41 3.84 6.99 -92.71 -0.65 3.19 16 38 H 0.09 1.55 7.47 -2.39 -0.02 1.53 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.35 7.87 -2.39 -0.02 1.33 16 44 H 0.34 10.47 8.25 -89.69 -0.74 9.73 16 45 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 46 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 47 H 0.39 14.80 5.76 -92.70 -0.53 14.27 16 48 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 49 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.08 0.97 7.47 -2.39 -0.02 0.96 16 51 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 52 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -81.11 414.19 0.04 -81.07 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: -1.05 Total: 41.60 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 5.85 Total: 5.96 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -6.57 Total: -118.60 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.10 Total: -50.01 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.90 Total: 39.97 kcal Total: -81.11 0.04 -81.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120651616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.659 kcal (2) G-P(sol) polarization free energy of solvation -81.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds