Wall clock time and date at job start Tue Mar 31 2020 20:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47332 * 2 1 4 4 H 1.08993 * 109.47125 * 304.99802 * 3 2 1 5 5 C 1.53000 * 109.47031 * 65.00098 * 3 2 1 6 6 C 1.50694 * 109.47049 * 184.99593 * 3 2 1 7 7 O 1.21280 * 120.00532 * 0.02562 * 6 3 2 8 8 N 1.34779 * 120.00094 * 180.02562 * 6 3 2 9 9 C 1.46499 * 120.00194 * 180.02562 * 8 6 3 10 10 C 1.53952 * 113.57988 * 154.99954 * 9 8 6 11 11 C 1.52908 * 86.78255 * 89.87015 * 10 9 8 12 12 C 1.52908 * 121.13680 * 150.62093 * 11 10 9 13 13 C 1.53944 * 86.78342 * 100.81750 * 12 11 10 14 14 N 1.46904 * 113.57707 * 139.33844 * 13 12 11 15 15 C 1.46899 * 111.00029 * 155.00020 * 14 13 12 16 16 C 1.50703 * 109.47107 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00016 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00108 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00333 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99712 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00268 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99720 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47171 * 89.99944 * 23 21 19 25 25 H 1.48508 * 109.46868 * 210.00078 * 23 21 19 26 26 H 1.48507 * 109.47197 * 329.99774 * 23 21 19 27 27 C 1.52906 * 121.13452 * 259.17875 * 11 10 9 28 28 C 1.52906 * 88.04439 * 24.89659 * 11 10 9 29 29 H 1.08997 * 109.47180 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46764 * 299.99924 * 1 2 3 31 31 H 1.08999 * 109.46801 * 59.99875 * 1 2 3 32 32 H 1.08998 * 109.47265 * 239.99944 * 2 1 3 33 33 H 1.08999 * 109.46801 * 120.00125 * 2 1 3 34 34 H 1.08998 * 109.47657 * 59.99513 * 5 3 2 35 35 H 1.08997 * 109.47210 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46856 * 300.00056 * 5 3 2 37 37 H 0.96996 * 119.99768 * 0.02562 * 8 6 3 38 38 H 1.08998 * 112.87795 * 23.85700 * 9 8 6 39 39 H 1.08997 * 113.66234 * 335.39607 * 10 9 8 40 40 H 1.08998 * 113.66232 * 204.34181 * 10 9 8 41 41 H 1.09004 * 113.66012 * 346.34393 * 12 11 10 42 42 H 1.08998 * 113.66011 * 215.29355 * 12 11 10 43 43 H 1.09003 * 113.58176 * 270.04711 * 13 12 11 44 44 H 1.00902 * 111.00190 * 31.03720 * 14 13 12 45 45 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 46 46 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 47 47 H 0.97005 * 119.99463 * 359.97438 * 18 16 15 48 48 H 0.96996 * 119.99832 * 179.97438 * 22 21 19 49 49 H 1.08998 * 113.66200 * 144.70772 * 27 11 10 50 50 H 1.08998 * 113.66586 * 13.64895 * 27 11 10 51 51 H 1.09007 * 113.66078 * 89.57474 * 28 11 10 52 52 H 1.09001 * 113.66710 * 220.63222 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 3.5419 1.4442 -0.1237 7 8 4.1450 0.3951 -0.2045 8 7 4.2151 2.6117 -0.1447 9 6 5.6751 2.6134 -0.2655 10 6 6.2413 3.9100 -0.8723 11 6 6.3215 4.4428 0.5587 12 6 7.3816 5.4681 0.9624 13 6 6.2740 6.5308 0.8448 14 7 6.3141 7.5416 1.9101 15 6 5.6877 8.7954 1.4701 16 6 5.7471 9.8055 2.5868 17 8 6.2602 9.5099 3.6453 18 7 5.2290 11.0371 2.4098 19 6 5.2835 11.9562 3.4255 20 1 5.7411 11.6933 4.3677 21 6 4.7498 13.2261 3.2427 22 7 4.1925 13.5459 2.0964 23 14 4.8246 14.4787 4.6265 24 1 6.0815 15.2620 4.5177 25 1 3.6601 15.3950 4.5281 26 1 4.7916 13.7748 5.9337 27 6 5.2624 5.4002 1.1063 28 6 6.4004 2.9931 1.0383 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0699 1.5875 2.1492 35 1 1.9983 3.1543 1.3072 36 1 0.5490 2.1252 1.3969 37 1 3.7328 3.4507 -0.0797 38 1 6.0627 1.7079 -0.7323 39 1 5.5295 4.4466 -1.4997 40 1 7.2142 3.7825 -1.3468 41 1 8.1793 5.5846 0.2287 42 1 7.7544 5.3351 1.9779 43 1 6.1933 6.9684 -0.1502 44 1 7.2603 7.7002 2.2227 45 1 6.2202 9.1821 0.6012 46 1 4.6472 8.6082 1.2049 47 1 4.8183 11.2733 1.5633 48 1 3.8197 14.4322 1.9689 49 1 5.0395 5.2482 2.1624 50 1 4.3672 5.4626 0.4877 51 1 7.4182 2.6078 1.1008 52 1 5.8158 2.7971 1.9371 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120651618.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:22 Heat of formation + Delta-G solvation = -47.494126 kcal Electronic energy + Delta-G solvation = -28889.372604 eV Core-core repulsion = 24889.380986 eV Total energy + Delta-G solvation = -3999.991618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18283 -39.73807 -38.23062 -36.50259 -35.64358 -34.11140 -33.55002 -32.00407 -31.18162 -29.89243 -26.72943 -26.14061 -25.96920 -25.65620 -24.28199 -23.22042 -21.95286 -20.34562 -20.09895 -19.25885 -18.24279 -17.87437 -17.47646 -16.39683 -16.22584 -15.78462 -15.59567 -15.27879 -15.08614 -14.95596 -14.53160 -14.34194 -13.98314 -13.88738 -13.79348 -13.31715 -13.21950 -12.97206 -12.78078 -12.62400 -12.49172 -12.23035 -12.14077 -12.04191 -11.94155 -11.66122 -11.52416 -11.35284 -11.19131 -11.11879 -11.04284 -11.04088 -10.50067 -10.40223 -10.32421 -10.23193 -10.03393 -9.93923 -9.51887 -9.26738 -8.44536 -8.06585 -7.96582 -6.42705 -3.83447 2.36717 2.84642 3.16963 3.25615 3.31733 3.90359 4.05356 4.18564 4.20344 4.30630 4.34710 4.40075 4.47826 4.54055 4.59881 4.70113 4.81292 4.92425 5.00962 5.11967 5.18846 5.19626 5.23328 5.27284 5.32945 5.44184 5.44614 5.50656 5.53536 5.60485 5.61924 5.64524 5.72098 5.73229 5.76975 5.80973 5.85025 5.89911 5.91379 5.96903 5.99855 6.18707 6.24116 6.33599 6.42075 7.23189 7.30449 7.54322 7.67679 7.96512 8.05685 8.60561 9.17108 9.53620 10.05195 10.75056 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.001880 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.370773 B =14886.359195 C =16183.172957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.147 4.147 6 C 0.519 3.481 7 O -0.542 6.542 8 N -0.710 5.710 9 C 0.121 3.879 10 C -0.123 4.123 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.062 3.938 14 N -0.657 5.657 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.100 4.100 28 C -0.135 4.135 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.402 0.598 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.350 0.650 45 H 0.042 0.958 46 H 0.084 0.916 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.095 0.905 50 H 0.059 0.941 51 H 0.090 0.910 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 -23.016 -9.879 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.205 4.205 6 C 0.306 3.694 7 O -0.418 6.418 8 N -0.361 5.361 9 C 0.016 3.984 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.165 4.165 13 C -0.048 4.048 14 N -0.289 5.289 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.138 4.138 28 C -0.174 4.174 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.171 0.829 45 H 0.060 0.940 46 H 0.102 0.898 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.113 0.887 50 H 0.078 0.922 51 H 0.108 0.892 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.059 -24.003 -8.965 25.805 hybrid contribution 0.188 1.804 -0.522 1.887 sum -2.870 -22.199 -9.487 24.312 Atomic orbital electron populations 1.21851 0.95404 1.01941 1.01983 1.21338 0.95414 0.94091 1.03444 1.21374 0.91614 0.99564 1.00762 0.88513 1.21847 1.02580 1.00371 0.95683 1.20743 0.90022 0.83476 0.75164 1.90689 1.70403 1.31445 1.49302 1.45746 1.06868 1.08884 1.74627 1.21836 0.80073 0.99045 0.97484 1.23070 1.01848 0.95578 0.95547 1.22355 0.98941 0.93307 0.96076 1.23049 0.96087 0.95135 1.02265 1.22985 0.96874 0.91248 0.93710 1.60221 1.25427 1.08234 1.35019 1.21727 1.00399 0.90117 0.96004 1.19847 0.84740 0.83410 0.89418 1.90520 1.49198 1.78913 1.28131 1.41872 1.51889 1.10380 1.15963 1.19704 1.35987 0.91630 0.95550 0.87933 1.25265 0.96738 0.98227 0.97762 1.69610 1.39020 1.21974 1.23757 0.85857 0.77681 0.79859 0.80886 1.20431 1.20922 1.19401 1.22824 0.95518 0.93720 1.01761 1.23225 1.01004 0.95232 0.97901 0.92461 0.92307 0.92692 0.91219 0.91310 0.91948 0.91960 0.91008 0.76294 0.88204 0.90764 0.88540 0.91526 0.89006 0.91279 0.82948 0.93976 0.89757 0.77486 0.91887 0.88702 0.92203 0.89153 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.10 -0.77 4.75 -26.73 -0.13 -0.90 16 3 C -0.11 -0.78 2.73 -91.77 -0.25 -1.03 16 4 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.15 -0.90 8.84 37.16 0.33 -0.57 16 6 C 0.52 5.01 7.15 -10.99 -0.08 4.94 16 7 O -0.54 -7.27 15.52 5.56 0.09 -7.19 16 8 N -0.71 -5.72 5.15 -52.85 -0.27 -5.99 16 9 C 0.12 1.02 4.32 -66.95 -0.29 0.73 16 10 C -0.12 -0.89 7.59 -26.28 -0.20 -1.09 16 11 C -0.11 -0.91 1.02 -154.72 -0.16 -1.06 16 12 C -0.13 -1.25 7.41 -26.29 -0.19 -1.44 16 13 C 0.06 0.72 4.14 -66.73 -0.28 0.44 16 14 N -0.66 -10.27 6.18 -106.95 -0.66 -10.93 16 15 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 16 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 17 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 18 N -0.56 -14.26 5.29 -10.97 -0.06 -14.31 16 19 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 23 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.10 -1.01 7.18 -26.29 -0.19 -1.20 16 28 C -0.13 -1.17 7.64 -26.28 -0.20 -1.37 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.59 7.95 -51.93 -0.41 0.17 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 36 H 0.07 0.37 6.56 -51.93 -0.34 0.03 16 37 H 0.40 2.63 6.98 -40.82 -0.28 2.34 16 38 H 0.10 0.97 7.47 -51.93 -0.39 0.58 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 44 H 0.35 5.72 8.25 -39.29 -0.32 5.40 16 45 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 46 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.06 0.53 7.47 -51.93 -0.39 0.14 16 51 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 52 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 417.30 15.07 6.29 6.29 Total: -1.00 -32.65 417.30 -9.49 -42.14 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -9.03 Total: 13.44 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.63 Total: 0.04 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.27 Total: -54.96 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.65 -9.49 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120651618.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.354 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds