Wall clock time and date at job start Tue Mar 31 2020 20:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46941 * 2 1 4 4 H 1.09004 * 109.47181 * 55.00375 * 3 2 1 5 5 C 1.53001 * 109.47166 * 294.99960 * 3 2 1 6 6 C 1.50705 * 109.47094 * 174.99790 * 3 2 1 7 7 O 1.21272 * 120.00141 * 0.02562 * 6 3 2 8 8 N 1.34782 * 119.99650 * 179.97438 * 6 3 2 9 9 C 1.46500 * 119.99447 * 180.02562 * 8 6 3 10 10 C 1.50702 * 109.46596 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00352 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99605 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99983 * 180.02562 * 12 10 9 14 14 C 1.53954 * 113.58380 * 205.00420 * 13 12 10 15 15 C 1.52905 * 86.78040 * 220.66109 * 14 13 12 16 16 C 1.52917 * 121.13340 * 150.61456 * 15 14 13 17 17 C 1.53957 * 86.77928 * 150.61497 * 16 15 14 18 18 N 1.46499 * 113.58030 * 220.66444 * 17 16 15 19 19 C 1.36934 * 119.99782 * 205.00320 * 18 17 16 20 20 H 1.07999 * 120.00173 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99964 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99878 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00317 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47337 * 89.99817 * 23 21 19 25 25 H 1.48495 * 109.47308 * 210.00239 * 23 21 19 26 26 H 1.48505 * 109.46714 * 329.99624 * 23 21 19 27 27 C 1.52909 * 121.13655 * 259.17353 * 15 14 13 28 28 C 1.52910 * 88.04631 * 24.89586 * 15 14 13 29 29 H 1.09003 * 109.47545 * 299.99626 * 1 2 3 30 30 H 1.09002 * 109.47757 * 59.99951 * 1 2 3 31 31 H 1.09002 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47545 * 240.00374 * 2 1 3 33 33 H 1.08998 * 109.47694 * 119.99540 * 2 1 3 34 34 H 1.09007 * 109.46707 * 179.97438 * 5 3 2 35 35 H 1.08989 * 109.47147 * 299.99852 * 5 3 2 36 36 H 1.08999 * 109.46577 * 60.00220 * 5 3 2 37 37 H 0.96997 * 120.00120 * 0.02562 * 8 6 3 38 38 H 1.08996 * 109.47402 * 60.00610 * 9 8 6 39 39 H 1.08995 * 109.47184 * 299.99982 * 9 8 6 40 40 H 0.97003 * 120.00247 * 0.02562 * 12 10 9 41 41 H 1.09009 * 112.87577 * 336.14188 * 13 12 10 42 42 H 1.08990 * 113.66623 * 106.18266 * 14 13 12 43 43 H 1.09000 * 113.74113 * 335.14493 * 14 13 12 44 44 H 1.08997 * 113.66031 * 265.08631 * 16 15 14 45 45 H 1.09002 * 113.66187 * 36.15037 * 16 15 14 46 46 H 1.09001 * 113.57949 * 89.86751 * 17 16 15 47 47 H 0.96996 * 119.99947 * 24.99948 * 18 17 16 48 48 H 0.97005 * 120.00007 * 180.02562 * 22 21 19 49 49 H 1.09001 * 113.66026 * 323.85782 * 27 15 14 50 50 H 1.08998 * 113.66179 * 94.82069 * 27 15 14 51 51 H 1.09006 * 113.66074 * 89.56978 * 28 15 14 52 52 H 1.08994 * 113.66448 * 220.62942 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6351 2.1266 -1.3074 6 6 3.5418 1.4444 0.1239 7 8 4.1450 0.3953 0.2038 8 7 4.2148 2.6120 0.1448 9 6 5.6749 2.6137 0.2647 10 6 6.1771 4.0346 0.2648 11 8 5.3927 4.9551 0.1742 12 7 7.4980 4.2824 0.3667 13 6 7.9863 5.6636 0.3673 14 6 9.4416 5.8027 -0.1153 15 6 9.6245 6.8268 1.0054 16 6 10.9842 7.0327 1.6741 17 6 10.5462 8.4882 1.9187 18 7 11.6137 9.4666 1.6968 19 6 11.5735 10.6795 2.3312 20 1 10.7550 10.9146 2.9955 21 6 12.5853 11.6064 2.1214 22 7 13.5830 11.3197 1.3122 23 14 12.5309 13.2607 2.9873 24 1 13.2333 13.1599 4.2918 25 1 13.1988 14.2835 2.1431 26 1 11.1170 13.6536 3.2154 27 6 9.5979 8.3281 0.7166 28 6 8.4745 6.1436 1.7462 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.9981 3.1544 -1.3071 35 1 2.0697 1.5876 -2.1491 36 1 0.5488 2.1252 -1.3968 37 1 3.7324 3.4510 0.0806 38 1 6.1092 2.0746 -0.5771 39 1 5.9636 2.1266 1.1961 40 1 8.1254 3.5462 0.4395 41 1 7.2982 6.3565 -0.1170 42 1 9.5323 6.2272 -1.1150 43 1 10.0361 4.8987 0.0168 44 1 11.1135 6.4550 2.5893 45 1 11.8271 6.9388 0.9894 46 1 10.0279 8.6341 2.8665 47 1 12.3490 9.2553 1.1005 48 1 14.2902 11.9673 1.1659 49 1 10.0512 8.5982 -0.2372 50 1 8.6195 8.7849 0.8654 51 1 8.7960 5.3347 2.4024 52 1 7.7926 6.8405 2.2334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122197110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:10 Heat of formation + Delta-G solvation = -61.007058 kcal Electronic energy + Delta-G solvation = -28239.778403 eV Core-core repulsion = 24239.200820 eV Total energy + Delta-G solvation = -4000.577583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77161 -41.13983 -40.14990 -37.31068 -36.41994 -35.56795 -35.27705 -33.69168 -31.52540 -30.89307 -28.73300 -26.76340 -26.57382 -26.23451 -25.97102 -23.86924 -22.60543 -21.67910 -21.49501 -20.87688 -19.43337 -18.83958 -18.54735 -17.75064 -17.25083 -16.99542 -16.87216 -16.71266 -16.22535 -16.02668 -15.81972 -15.45110 -15.20280 -15.16519 -14.52511 -14.44188 -14.25668 -13.98608 -13.74018 -13.62619 -13.40667 -13.17269 -13.04605 -12.98284 -12.96686 -12.85292 -12.56542 -12.51962 -12.39283 -12.34631 -12.14858 -11.84454 -11.71840 -11.58470 -11.33378 -11.08744 -11.03735 -10.88731 -10.83081 -10.69121 -10.27616 -10.03352 -8.97284 -7.95110 -5.22905 1.43846 1.46906 1.48184 1.56653 1.58020 1.76528 2.42870 2.56298 3.36472 3.49745 3.52514 3.57039 3.67949 3.73801 3.83364 3.87444 3.98614 4.00636 4.29220 4.31157 4.31817 4.34326 4.42948 4.48970 4.53288 4.62397 4.62849 4.73425 4.80898 4.83542 4.95340 4.96486 5.01992 5.02807 5.05804 5.08578 5.12196 5.12951 5.19581 5.24480 5.27064 5.37956 5.44402 5.51041 5.54874 5.61347 5.71300 6.27833 6.42333 6.46404 7.11172 7.14356 7.33540 8.11831 8.34405 9.28281 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034808 B = 0.001470 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.218064 B =19049.198263 C =19452.347337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.107 4.107 4 H 0.115 0.885 5 C -0.144 4.144 6 C 0.517 3.483 7 O -0.579 6.579 8 N -0.716 5.716 9 C 0.101 3.899 10 C 0.512 3.488 11 O -0.575 6.575 12 N -0.698 5.698 13 C 0.131 3.869 14 C -0.118 4.118 15 C -0.091 4.091 16 C -0.123 4.123 17 C 0.144 3.856 18 N -0.729 5.729 19 C -0.245 4.245 20 H 0.074 0.926 21 C -0.075 4.075 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.271 1.271 27 C -0.138 4.138 28 C -0.119 4.119 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.415 0.585 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.420 0.580 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.065 0.935 50 H 0.054 0.946 51 H 0.105 0.895 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.676 -24.757 -4.085 34.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.128 4.128 4 H 0.133 0.867 5 C -0.202 4.202 6 C 0.305 3.695 7 O -0.458 6.458 8 N -0.371 5.371 9 C -0.026 4.026 10 C 0.298 3.702 11 O -0.454 6.454 12 N -0.350 5.350 13 C 0.026 3.974 14 C -0.156 4.156 15 C -0.092 4.092 16 C -0.162 4.162 17 C 0.035 3.965 18 N -0.366 5.366 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.267 4.267 22 N -0.621 5.621 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.196 1.196 27 C -0.179 4.179 28 C -0.157 4.157 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.254 0.746 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.258 0.742 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.129 0.871 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.206 0.794 48 H 0.060 0.940 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.123 0.877 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.838 -24.676 -3.974 34.539 hybrid contribution 0.916 1.317 0.158 1.612 sum -22.923 -23.359 -3.815 32.949 Atomic orbital electron populations 1.21824 0.93756 1.02414 1.02766 1.21318 0.96795 0.93873 1.02211 1.21407 0.89273 0.99864 1.02222 0.86666 1.21847 1.03604 1.00187 0.94530 1.21230 0.91285 0.82516 0.74452 1.90685 1.71261 1.32602 1.51271 1.45810 1.06670 1.10015 1.74621 1.21131 0.82448 0.93170 1.05865 1.20790 0.83062 0.91160 0.75149 1.90704 1.56150 1.47229 1.51364 1.45798 1.06931 1.09184 1.73047 1.22362 0.94877 0.82958 0.97209 1.23158 0.94393 0.99623 0.98381 1.21902 0.95452 0.93926 0.97911 1.23104 0.96370 0.96332 1.00346 1.21943 0.89704 0.88839 0.96019 1.42598 1.25787 1.14362 1.53878 1.19709 1.05279 0.92921 1.19793 0.90778 1.25538 0.97339 1.02328 1.01529 1.69810 1.13390 1.36680 1.42190 0.85176 0.77663 0.79633 0.77534 1.21338 1.22202 1.19580 1.23387 0.99884 0.94379 1.00224 1.23174 0.95863 0.99969 0.96712 0.91935 0.91412 0.92249 0.92476 0.92607 0.91635 0.92730 0.89345 0.74624 0.87138 0.87142 0.74207 0.88618 0.90930 0.87059 0.90751 0.90779 0.91291 0.79434 0.94036 0.91611 0.92711 0.87713 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 71.98 0.70 -0.42 16 2 C -0.10 -1.24 4.75 30.59 0.15 -1.09 16 3 C -0.11 -1.16 2.72 -11.54 -0.03 -1.19 16 4 H 0.12 0.89 8.14 -2.39 -0.02 0.88 16 5 C -0.14 -1.18 8.84 71.98 0.64 -0.54 16 6 C 0.52 8.62 7.15 87.66 0.63 9.24 16 7 O -0.58 -13.72 15.92 -3.00 -0.05 -13.77 16 8 N -0.72 -10.46 5.42 -466.79 -2.53 -12.99 16 9 C 0.10 1.30 6.15 85.63 0.53 1.83 16 10 C 0.51 8.53 7.90 87.66 0.69 9.23 16 11 O -0.57 -14.03 15.27 -3.03 -0.05 -14.08 16 12 N -0.70 -9.42 5.35 -439.50 -2.35 -11.77 16 13 C 0.13 2.45 4.24 45.63 0.19 2.65 16 14 C -0.12 -2.17 7.59 30.88 0.23 -1.93 16 15 C -0.09 -2.24 1.11 -52.31 -0.06 -2.30 16 16 C -0.12 -3.67 7.59 30.89 0.23 -3.44 16 17 C 0.14 5.61 4.48 45.63 0.20 5.82 16 18 N -0.73 -36.90 5.40 -319.92 -1.73 -38.63 16 19 C -0.25 -13.74 9.97 84.03 0.84 -12.90 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 22 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 23 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 C -0.14 -4.61 7.64 30.88 0.24 -4.38 16 28 C -0.12 -2.44 7.64 30.88 0.24 -2.20 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.38 6.57 -2.39 -0.02 0.37 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.82 7.95 -2.39 -0.02 0.81 16 34 H 0.06 0.51 7.56 -2.38 -0.02 0.49 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 0.45 6.56 -2.39 -0.02 0.43 16 37 H 0.42 5.82 6.85 -92.71 -0.64 5.18 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.42 2.98 8.73 -92.71 -0.81 2.17 16 41 H 0.10 2.26 7.47 -2.38 -0.02 2.24 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 1.52 8.12 -2.39 -0.02 1.50 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 46 H 0.07 2.72 8.10 -2.39 -0.02 2.70 16 47 H 0.37 20.23 7.92 -92.71 -0.73 19.49 16 48 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 49 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 52 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -73.72 420.19 0.23 -73.48 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -1.25 Total: 34.18 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.88 Total: -5.51 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -6.33 Total: -122.69 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.09 Total: -27.85 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.72 0.23 -73.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122197110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.476 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds