Wall clock time and date at job start Tue Mar 31 2020 20:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 H 1.08998 * 109.47558 * 305.00182 * 3 2 1 5 5 C 1.53005 * 109.47016 * 65.00163 * 3 2 1 6 6 C 1.50705 * 109.47094 * 184.99727 * 3 2 1 7 7 O 1.21272 * 120.00141 * 0.02562 * 6 3 2 8 8 N 1.34782 * 119.99650 * 179.97438 * 6 3 2 9 9 C 1.46500 * 119.99447 * 180.02562 * 8 6 3 10 10 C 1.50702 * 109.46596 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00352 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99605 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99983 * 180.02562 * 12 10 9 14 14 C 1.53954 * 113.58380 * 205.00420 * 13 12 10 15 15 C 1.52905 * 86.78040 * 220.66109 * 14 13 12 16 16 C 1.52917 * 121.13340 * 150.61456 * 15 14 13 17 17 C 1.53957 * 86.77928 * 150.61497 * 16 15 14 18 18 N 1.46499 * 113.58030 * 220.66444 * 17 16 15 19 19 C 1.36934 * 119.99782 * 205.00320 * 18 17 16 20 20 H 1.07999 * 120.00173 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99964 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99878 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00317 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47337 * 89.99817 * 23 21 19 25 25 H 1.48495 * 109.47308 * 210.00239 * 23 21 19 26 26 H 1.48505 * 109.46714 * 329.99624 * 23 21 19 27 27 C 1.52909 * 121.13655 * 259.17353 * 15 14 13 28 28 C 1.52910 * 88.04631 * 24.89586 * 15 14 13 29 29 H 1.08995 * 109.47183 * 300.00107 * 1 2 3 30 30 H 1.08999 * 109.47193 * 59.99836 * 1 2 3 31 31 H 1.08994 * 109.46726 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47721 * 240.00274 * 2 1 3 33 33 H 1.08996 * 109.47133 * 119.99636 * 2 1 3 34 34 H 1.08995 * 109.47396 * 59.99843 * 5 3 2 35 35 H 1.08998 * 109.46887 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.46867 * 299.99770 * 5 3 2 37 37 H 0.96997 * 120.00120 * 0.02562 * 8 6 3 38 38 H 1.08996 * 109.47402 * 60.00610 * 9 8 6 39 39 H 1.08995 * 109.47184 * 299.99982 * 9 8 6 40 40 H 0.97003 * 120.00247 * 0.02562 * 12 10 9 41 41 H 1.09009 * 112.87577 * 336.14188 * 13 12 10 42 42 H 1.08990 * 113.66623 * 106.18266 * 14 13 12 43 43 H 1.09000 * 113.74113 * 335.14493 * 14 13 12 44 44 H 1.08997 * 113.66031 * 265.08631 * 16 15 14 45 45 H 1.09002 * 113.66187 * 36.15037 * 16 15 14 46 46 H 1.09001 * 113.57949 * 89.86751 * 17 16 15 47 47 H 0.96996 * 119.99947 * 24.99948 * 18 17 16 48 48 H 0.97005 * 120.00007 * 180.02562 * 22 21 19 49 49 H 1.09001 * 113.66026 * 323.85782 * 27 15 14 50 50 H 1.08998 * 113.66179 * 94.82069 * 27 15 14 51 51 H 1.09006 * 113.66074 * 89.56978 * 28 15 14 52 52 H 1.08994 * 113.66448 * 220.62942 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4444 -0.1238 7 8 4.1450 0.3954 -0.2045 8 7 4.2148 2.6120 -0.1457 9 6 5.6748 2.6138 -0.2666 10 6 6.1770 4.0346 -0.2665 11 8 5.3927 4.9551 -0.1740 12 7 7.4980 4.2824 -0.3681 13 6 7.9863 5.6636 -0.3674 14 6 9.3436 5.8374 -1.0729 15 6 9.7124 6.7957 0.0600 16 6 11.1642 6.9691 0.5079 17 6 10.7791 8.4059 0.9048 18 7 11.8006 9.4006 0.5681 19 6 11.8705 10.5745 1.2697 20 1 11.1730 10.7669 2.0714 21 6 12.8387 11.5169 0.9510 22 7 13.6891 11.2822 -0.0258 23 14 12.9347 13.1179 1.9084 24 1 13.8407 12.9452 3.0722 25 1 13.4603 14.1911 1.0269 26 1 11.5792 13.4903 2.3872 27 6 9.6461 8.3111 -0.1331 28 6 8.6959 6.0653 0.9384 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8935 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0698 1.5876 2.1492 35 1 1.9981 3.1543 1.3072 36 1 0.5488 2.1252 1.3969 37 1 3.7324 3.4511 -0.0815 38 1 5.9629 2.1264 -1.1980 39 1 6.1097 2.0750 0.5751 40 1 8.1253 3.5462 -0.4417 41 1 7.2315 6.3801 -0.6917 42 1 9.2715 6.3195 -2.0477 43 1 9.9474 4.9301 -1.0924 44 1 11.4389 6.3400 1.3546 45 1 11.8832 6.9190 -0.3098 46 1 10.4237 8.4942 1.9314 47 1 12.4273 9.2277 -0.1517 48 1 14.3659 11.9406 -0.2482 49 1 9.9384 8.6381 -1.1310 50 1 8.7075 8.7539 0.2001 51 1 9.1167 5.2214 1.4851 52 1 8.1064 6.7296 1.5701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122197111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:13 Heat of formation + Delta-G solvation = -60.999490 kcal Electronic energy + Delta-G solvation = -28248.491469 eV Core-core repulsion = 24247.914215 eV Total energy + Delta-G solvation = -4000.577254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77159 -41.13974 -40.14986 -37.31063 -36.41987 -35.56793 -35.27697 -33.69163 -31.52531 -30.89302 -28.73321 -26.76341 -26.57377 -26.23443 -25.97100 -23.86923 -22.60566 -21.67907 -21.49495 -20.87676 -19.43408 -18.84169 -18.54323 -17.74961 -17.24389 -17.02264 -16.88839 -16.67113 -16.21626 -16.03406 -15.83127 -15.46913 -15.16964 -15.16728 -14.55743 -14.43650 -14.21335 -14.02779 -13.72640 -13.61649 -13.41573 -13.17224 -13.04553 -12.98280 -12.96662 -12.85319 -12.56500 -12.52016 -12.39189 -12.34674 -12.14847 -11.84444 -11.71863 -11.58494 -11.33375 -11.08740 -11.03733 -10.88698 -10.83075 -10.69155 -10.27597 -10.03360 -8.97274 -7.95098 -5.22891 1.43847 1.46916 1.48196 1.56664 1.58000 1.76532 2.42871 2.56310 3.36486 3.49753 3.52529 3.57020 3.67922 3.73803 3.83270 3.87632 3.98543 4.00648 4.29232 4.30838 4.32124 4.34320 4.42963 4.49013 4.53225 4.62417 4.62805 4.73458 4.80899 4.83541 4.95341 4.96409 5.01996 5.02826 5.05810 5.08583 5.12299 5.12958 5.19601 5.24483 5.27064 5.38001 5.44410 5.51071 5.54878 5.61349 5.71310 6.27843 6.42331 6.46403 7.11172 7.14352 7.33551 8.11843 8.34415 9.28295 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033961 B = 0.001480 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.272151 B =18914.250208 C =19433.942836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C -0.106 4.106 4 H 0.116 0.884 5 C -0.145 4.145 6 C 0.517 3.483 7 O -0.579 6.579 8 N -0.716 5.716 9 C 0.101 3.899 10 C 0.512 3.488 11 O -0.575 6.575 12 N -0.698 5.698 13 C 0.131 3.869 14 C -0.118 4.118 15 C -0.091 4.091 16 C -0.123 4.123 17 C 0.144 3.856 18 N -0.729 5.729 19 C -0.245 4.245 20 H 0.074 0.926 21 C -0.075 4.075 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.271 1.271 27 C -0.138 4.138 28 C -0.119 4.119 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.415 0.585 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.420 0.580 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.065 0.935 50 H 0.054 0.946 51 H 0.105 0.895 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.088 -24.613 -0.900 34.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.127 4.127 4 H 0.134 0.866 5 C -0.202 4.202 6 C 0.305 3.695 7 O -0.458 6.458 8 N -0.371 5.371 9 C -0.026 4.026 10 C 0.298 3.702 11 O -0.454 6.454 12 N -0.350 5.350 13 C 0.026 3.974 14 C -0.156 4.156 15 C -0.092 4.092 16 C -0.162 4.162 17 C 0.035 3.965 18 N -0.366 5.366 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.267 4.267 22 N -0.621 5.621 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.196 1.196 27 C -0.179 4.179 28 C -0.157 4.157 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.254 0.746 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.258 0.742 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.129 0.871 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.206 0.794 48 H 0.060 0.940 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.123 0.877 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.229 -24.539 -0.754 34.493 hybrid contribution 0.932 1.312 0.031 1.610 sum -23.297 -23.227 -0.723 32.906 Atomic orbital electron populations 1.21823 0.93753 1.02414 1.02768 1.21319 0.96798 0.93872 1.02211 1.21406 0.89271 0.99861 1.02206 0.86625 1.21850 1.03605 1.00189 0.94551 1.21231 0.91285 0.82516 0.74453 1.90686 1.71262 1.32603 1.51267 1.45810 1.06678 1.10013 1.74615 1.21131 0.82450 0.93170 1.05863 1.20791 0.83030 0.91164 0.75178 1.90704 1.56220 1.47224 1.51299 1.45798 1.06924 1.09183 1.73055 1.22362 0.94866 0.83121 0.97059 1.23158 0.94733 1.00035 0.97631 1.21902 0.95136 0.93988 0.98165 1.23104 0.95699 0.96533 1.00816 1.21943 0.89533 0.88734 0.96294 1.42599 1.36723 1.17124 1.40180 1.19709 1.11565 0.94914 1.11510 0.90777 1.25538 0.98591 1.02289 1.00317 1.69810 1.21829 1.36867 1.33566 0.85176 0.77840 0.79435 0.77556 1.21336 1.22203 1.19579 1.23387 0.99705 0.94290 1.00493 1.23173 0.96080 1.00011 0.96448 0.91430 0.91913 0.92249 0.92577 0.92507 0.92765 0.91644 0.89340 0.74624 0.87093 0.87185 0.74207 0.88620 0.90933 0.87058 0.90749 0.90780 0.91288 0.79435 0.94037 0.91614 0.92711 0.87714 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 71.98 0.70 -0.42 16 2 C -0.10 -1.24 4.75 30.60 0.15 -1.09 16 3 C -0.11 -1.16 2.73 -11.54 -0.03 -1.19 16 4 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 5 C -0.14 -1.20 8.84 71.98 0.64 -0.56 16 6 C 0.52 8.61 7.15 87.66 0.63 9.24 16 7 O -0.58 -13.72 15.92 -3.00 -0.05 -13.77 16 8 N -0.72 -10.46 5.42 -466.79 -2.53 -12.99 16 9 C 0.10 1.30 6.15 85.63 0.53 1.83 16 10 C 0.51 8.53 7.90 87.66 0.69 9.23 16 11 O -0.57 -14.03 15.27 -3.03 -0.05 -14.08 16 12 N -0.70 -9.42 5.35 -439.50 -2.35 -11.77 16 13 C 0.13 2.45 4.24 45.63 0.19 2.65 16 14 C -0.12 -2.17 7.59 30.88 0.23 -1.93 16 15 C -0.09 -2.24 1.11 -52.31 -0.06 -2.30 16 16 C -0.12 -3.67 7.59 30.89 0.23 -3.44 16 17 C 0.14 5.61 4.48 45.63 0.20 5.82 16 18 N -0.73 -36.90 5.40 -319.92 -1.73 -38.63 16 19 C -0.25 -13.73 9.97 84.03 0.84 -12.90 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 22 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 23 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 27 C -0.14 -4.61 7.64 30.88 0.24 -4.38 16 28 C -0.12 -2.43 7.64 30.88 0.24 -2.20 16 29 H 0.07 0.38 6.56 -2.39 -0.02 0.37 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.82 7.95 -2.39 -0.02 0.81 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.52 7.57 -2.39 -0.02 0.50 16 36 H 0.09 0.46 6.57 -2.38 -0.02 0.44 16 37 H 0.42 5.82 6.86 -92.71 -0.64 5.18 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.42 2.98 8.73 -92.71 -0.81 2.17 16 41 H 0.10 2.26 7.47 -2.38 -0.02 2.24 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 1.52 8.12 -2.39 -0.02 1.50 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 46 H 0.07 2.72 8.10 -2.39 -0.02 2.70 16 47 H 0.37 20.23 7.92 -92.71 -0.73 19.49 16 48 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 49 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 52 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -73.71 420.19 0.23 -73.48 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -1.25 Total: 34.20 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 5.88 Total: -5.52 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -6.33 Total: -122.68 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.09 Total: -27.85 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -73.71 0.23 -73.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122197111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.479 kcal (2) G-P(sol) polarization free energy of solvation -73.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds