Wall clock time and date at job start Tue Mar 31 2020 19:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46556 * 2 1 4 4 C 1.50707 * 109.46819 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99791 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00038 * 179.97438 * 4 3 2 7 7 C 1.46504 * 120.00011 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.60136 * 35.00599 * 7 6 4 9 9 C 1.53348 * 109.60520 * 274.68024 * 7 6 4 10 10 C 1.53004 * 108.45955 * 172.88566 * 9 7 6 11 11 C 1.50178 * 110.00961 * 48.63735 * 10 9 7 12 12 O 1.21279 * 118.24526 * 162.50784 * 11 10 9 13 13 N 1.33354 * 123.50316 * 342.52588 * 11 10 9 14 14 C 1.45752 * 124.10737 * 2.24647 * 13 11 10 15 15 H 1.09001 * 109.13462 * 101.11501 * 14 13 11 16 16 C 1.53007 * 109.29928 * 220.58800 * 14 13 11 17 17 C 1.53047 * 109.45683 * 61.10769 * 16 14 13 18 18 C 1.53190 * 109.31053 * 178.61350 * 17 16 14 19 19 N 1.46927 * 108.77663 * 54.63545 * 18 17 16 20 20 C 1.36934 * 120.62969 * 126.36743 * 19 18 17 21 21 H 1.08001 * 120.00194 * 208.02214 * 20 19 18 22 22 C 1.38815 * 120.00108 * 28.02417 * 20 19 18 23 23 N 1.31618 * 120.00118 * 17.52180 * 22 20 19 24 24 Si 1.86801 * 119.99907 * 197.52335 * 22 20 19 25 25 H 1.48492 * 109.47084 * 94.06925 * 24 22 20 26 26 H 1.48509 * 109.46734 * 214.06598 * 24 22 20 27 27 H 1.48502 * 109.47371 * 334.06093 * 24 22 20 28 28 C 1.46925 * 118.73886 * 306.38871 * 19 18 17 29 29 C 1.53034 * 109.46299 * 301.04235 * 16 14 13 30 30 H 1.08998 * 109.47487 * 60.00594 * 1 2 3 31 31 H 1.08999 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47322 * 300.00007 * 1 2 3 33 33 H 1.08998 * 109.46977 * 119.99537 * 2 1 3 34 34 H 1.08998 * 109.46851 * 239.99788 * 2 1 3 35 35 H 1.08998 * 109.47100 * 299.99462 * 3 2 1 36 36 H 1.08998 * 109.47714 * 60.00316 * 3 2 1 37 37 H 0.97004 * 120.00181 * 0.02562 * 6 4 3 38 38 H 1.08995 * 109.67067 * 292.44481 * 9 7 6 39 39 H 1.08994 * 109.67291 * 52.97892 * 9 7 6 40 40 H 1.09002 * 109.25201 * 288.52527 * 10 9 7 41 41 H 1.09004 * 109.36235 * 168.81317 * 10 9 7 42 42 H 0.97000 * 117.94092 * 182.22610 * 13 11 10 43 43 H 1.08999 * 109.46326 * 181.06371 * 16 14 13 44 44 H 1.09003 * 109.49444 * 298.56288 * 17 16 14 45 45 H 1.09001 * 109.49674 * 58.66164 * 17 16 14 46 46 H 1.08999 * 109.58492 * 294.84524 * 18 17 16 47 47 H 1.09001 * 109.70103 * 174.49479 * 18 17 16 48 48 H 0.96998 * 120.00038 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.58910 * 293.82317 * 28 19 18 50 50 H 1.08992 * 109.58638 * 173.39421 * 28 19 18 51 51 H 1.09006 * 109.49646 * 301.33441 * 29 16 14 52 52 H 1.09001 * 109.49896 * 61.43165 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6098 0.0002 7 6 5.6858 2.6098 0.0014 8 1 6.0520 1.7683 -0.5867 9 6 6.1992 2.4932 1.4417 10 6 7.7184 2.3162 1.4016 11 6 8.3321 3.3467 0.4978 12 8 9.5218 3.5611 0.5964 13 7 7.6388 4.0388 -0.4070 14 6 6.1992 3.9184 -0.6005 15 1 5.7020 4.7580 -0.1148 16 6 5.8865 3.9433 -2.0981 17 6 6.5732 2.7587 -2.7820 18 6 6.2297 2.7670 -4.2749 19 7 6.5872 4.0774 -4.8351 20 6 7.4027 4.1685 -5.9314 21 1 8.0183 5.0441 -6.0753 22 6 7.4380 3.1354 -6.8579 23 7 6.4697 2.2444 -6.8874 24 14 8.8600 3.0096 -8.0627 25 1 9.8976 2.1020 -7.5108 26 1 8.3671 2.4698 -9.3555 27 1 9.4455 4.3569 -8.2800 28 6 6.0536 5.2882 -4.1964 29 6 6.3990 5.2516 -2.7044 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.7357 3.4498 -0.0001 38 1 5.9527 3.4001 1.9937 39 1 5.7398 1.6317 1.9263 40 1 7.9545 1.3199 1.0277 41 1 8.1222 2.4305 2.4077 42 1 8.1230 4.6615 -0.9715 43 1 4.8089 3.8724 -2.2453 44 1 7.6528 2.8421 -2.6565 45 1 6.2251 1.8281 -2.3337 46 1 5.1616 2.5930 -4.4050 47 1 6.7921 1.9855 -4.7857 48 1 6.4942 1.5228 -7.5351 49 1 4.9712 5.3198 -4.3202 50 1 6.5017 6.1703 -4.6537 51 1 5.9270 6.0953 -2.2009 52 1 7.4802 5.3114 -2.5797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130266401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:47 Heat of formation + Delta-G solvation = -74.579480 kcal Electronic energy + Delta-G solvation = -31305.739694 eV Core-core repulsion = 27304.573567 eV Total energy + Delta-G solvation = -4001.166127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.00305 -39.56074 -38.09704 -36.45090 -34.58813 -34.28399 -33.37273 -32.23133 -30.79248 -29.85573 -28.96969 -27.47203 -25.59496 -24.00996 -23.20196 -22.35151 -21.63226 -21.12611 -20.50326 -19.75763 -18.80465 -17.29973 -17.10162 -16.81899 -16.08358 -16.06699 -15.70489 -15.13150 -14.92207 -14.56000 -14.18368 -14.07043 -14.00856 -13.97736 -13.57890 -13.48552 -13.28705 -13.09178 -12.78001 -12.49524 -12.36349 -12.17650 -11.90545 -11.86378 -11.58537 -11.42290 -11.38243 -11.17071 -10.97529 -10.94226 -10.75235 -10.69885 -10.32263 -10.21800 -9.96515 -9.94360 -9.78946 -9.60996 -9.47447 -9.20044 -8.94951 -8.47508 -6.70024 -5.80473 -3.22968 2.53381 2.68672 2.83238 3.38144 3.42353 3.45708 3.46172 4.29324 4.45425 4.48956 4.56464 4.60447 4.66149 4.78527 4.80428 5.00746 5.07414 5.15216 5.21708 5.26111 5.27267 5.39645 5.41772 5.49948 5.52560 5.55846 5.59989 5.66503 5.74251 5.81395 5.84897 5.94955 5.95953 6.05719 6.11426 6.22309 6.25960 6.36744 6.54224 6.61108 6.66584 6.74235 6.82292 6.89447 7.31414 7.34232 7.39202 7.63506 7.78725 8.10388 8.25193 8.43456 9.19726 9.83204 10.39148 11.27916 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.003888 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.942154 B = 7200.667025 C = 9188.425956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.515 3.485 5 O -0.535 6.535 6 N -0.721 5.721 7 C 0.131 3.869 8 H 0.108 0.892 9 C -0.132 4.132 10 C -0.132 4.132 11 C 0.518 3.482 12 O -0.561 6.561 13 N -0.703 5.703 14 C 0.139 3.861 15 H 0.074 0.926 16 C -0.088 4.088 17 C -0.136 4.136 18 C 0.174 3.826 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.147 3.853 29 C -0.131 4.131 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.401 0.599 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.405 0.595 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.016 0.984 47 H 0.086 0.914 48 H 0.254 0.746 49 H 0.017 0.983 50 H 0.054 0.946 51 H 0.052 0.948 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.022 1.569 18.609 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.302 3.698 5 O -0.411 6.411 6 N -0.373 5.373 7 C 0.026 3.974 8 H 0.126 0.874 9 C -0.171 4.171 10 C -0.173 4.173 11 C 0.305 3.695 12 O -0.440 6.440 13 N -0.356 5.356 14 C 0.033 3.967 15 H 0.092 0.908 16 C -0.107 4.107 17 C -0.175 4.175 18 C 0.048 3.952 19 N -0.314 5.314 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.021 3.979 29 C -0.170 4.170 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.235 0.765 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.244 0.756 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.034 0.966 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.072 0.928 51 H 0.071 0.929 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.110 0.625 18.654 21.227 hybrid contribution 0.522 0.576 -0.938 1.218 sum -9.588 1.201 17.716 20.180 Atomic orbital electron populations 1.21795 0.95534 1.01968 1.01741 1.21282 0.95220 0.94651 1.03669 1.21727 0.91506 1.00372 1.04449 1.20763 0.90348 0.83395 0.75277 1.90726 1.70443 1.31200 1.48707 1.45856 1.06295 1.09019 1.76161 1.21284 0.80454 0.99305 0.96386 0.87423 1.22059 0.94701 1.03289 0.97059 1.21577 0.95532 0.99467 1.00690 1.20157 0.86821 0.81797 0.80717 1.90759 1.15770 1.67067 1.70407 1.45549 1.08472 1.43873 1.37747 1.21246 0.81204 0.96426 0.97834 0.90809 1.21438 1.00865 0.97636 0.90775 1.22278 1.00033 0.95241 0.99961 1.20724 0.97597 0.89196 0.87707 1.44043 1.56114 0.99806 1.31395 1.19189 1.15607 1.04904 0.98723 0.91714 1.25027 0.97569 0.99592 0.97284 1.70032 1.30358 1.16870 1.37303 0.86300 0.82337 0.77899 0.80392 1.21435 1.21767 1.20382 1.20847 0.95889 0.91133 0.90070 1.22106 1.00504 0.95160 0.99266 0.92539 0.92440 0.92839 0.91367 0.90981 0.88609 0.89035 0.76492 0.91144 0.90059 0.87924 0.88010 0.75621 0.90361 0.92456 0.93173 0.96628 0.89602 0.93638 0.96543 0.92778 0.92934 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16 2 C -0.11 -0.95 5.22 -26.73 -0.14 -1.09 16 3 C -0.14 -1.05 5.70 -27.88 -0.16 -1.21 16 4 C 0.52 5.53 7.80 -10.99 -0.09 5.44 16 5 O -0.53 -8.01 15.65 5.55 0.09 -7.92 16 6 N -0.72 -6.40 4.72 -53.67 -0.25 -6.65 16 7 C 0.13 1.41 1.73 -67.79 -0.12 1.29 16 8 H 0.11 1.50 5.39 -51.93 -0.28 1.22 16 9 C -0.13 -1.24 5.62 -26.55 -0.15 -1.39 16 10 C -0.13 -1.43 6.03 -28.13 -0.17 -1.60 16 11 C 0.52 7.31 7.72 -11.87 -0.09 7.22 16 12 O -0.56 -10.25 17.78 5.56 0.10 -10.15 16 13 N -0.70 -9.02 4.42 -54.85 -0.24 -9.26 16 14 C 0.14 1.52 2.35 -68.37 -0.16 1.36 16 15 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 16 C -0.09 -1.22 1.94 -90.57 -0.18 -1.40 16 17 C -0.14 -2.46 4.89 -26.61 -0.13 -2.59 16 18 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 19 N -0.59 -14.29 2.99 -172.32 -0.52 -14.81 16 20 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 21 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 22 C 0.00 0.11 4.90 -17.43 -0.09 0.03 16 23 N -0.90 -26.12 11.22 55.49 0.62 -25.50 16 24 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 28 C 0.15 2.86 6.52 -3.71 -0.02 2.84 16 29 C -0.13 -1.95 5.09 -26.61 -0.14 -2.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.40 2.41 8.60 -40.82 -0.35 2.06 16 38 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.41 5.59 6.73 -40.82 -0.27 5.32 16 43 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 44 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 45 H 0.05 0.88 6.16 -51.93 -0.32 0.56 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 51 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.06 0.92 6.51 -51.93 -0.34 0.58 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -33.79 399.16 -9.62 -43.41 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.98 Total: 4.92 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.42 Total: 3.10 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.39 Total: -56.22 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.19 Total: -18.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.79 -9.62 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130266401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.171 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds