Wall clock time and date at job start Tue Mar 31 2020 19:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46556 * 2 1 4 4 C 1.50707 * 109.46819 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99791 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00038 * 179.97438 * 4 3 2 7 7 C 1.46504 * 120.00011 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.60136 * 35.00599 * 7 6 4 9 9 C 1.53348 * 109.60520 * 274.68024 * 7 6 4 10 10 C 1.53004 * 108.45955 * 172.88566 * 9 7 6 11 11 C 1.50178 * 110.00961 * 48.63735 * 10 9 7 12 12 O 1.21279 * 118.24526 * 162.50784 * 11 10 9 13 13 N 1.33354 * 123.50316 * 342.52588 * 11 10 9 14 14 C 1.45752 * 124.10737 * 2.24647 * 13 11 10 15 15 H 1.09001 * 109.13462 * 101.11501 * 14 13 11 16 16 C 1.53007 * 109.29928 * 220.58800 * 14 13 11 17 17 C 1.53047 * 109.45683 * 61.10769 * 16 14 13 18 18 C 1.53190 * 109.31053 * 178.61350 * 17 16 14 19 19 N 1.46927 * 108.77663 * 54.63545 * 18 17 16 20 20 C 1.36934 * 120.62969 * 126.36743 * 19 18 17 21 21 H 1.08001 * 120.00194 * 208.02214 * 20 19 18 22 22 C 1.38815 * 120.00108 * 28.02417 * 20 19 18 23 23 N 1.31618 * 120.00118 * 17.52180 * 22 20 19 24 24 Si 1.86801 * 119.99907 * 197.52335 * 22 20 19 25 25 H 1.48492 * 109.47084 * 94.06925 * 24 22 20 26 26 H 1.48509 * 109.46734 * 214.06598 * 24 22 20 27 27 H 1.48502 * 109.47371 * 334.06093 * 24 22 20 28 28 C 1.46925 * 118.73886 * 306.38871 * 19 18 17 29 29 C 1.53034 * 109.46299 * 301.04235 * 16 14 13 30 30 H 1.08998 * 109.47487 * 60.00594 * 1 2 3 31 31 H 1.08999 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47322 * 300.00007 * 1 2 3 33 33 H 1.08998 * 109.46977 * 119.99537 * 2 1 3 34 34 H 1.08998 * 109.46851 * 239.99788 * 2 1 3 35 35 H 1.08998 * 109.47100 * 299.99462 * 3 2 1 36 36 H 1.08998 * 109.47714 * 60.00316 * 3 2 1 37 37 H 0.97004 * 120.00181 * 0.02562 * 6 4 3 38 38 H 1.08995 * 109.67067 * 292.44481 * 9 7 6 39 39 H 1.08994 * 109.67291 * 52.97892 * 9 7 6 40 40 H 1.09002 * 109.25201 * 288.52527 * 10 9 7 41 41 H 1.09004 * 109.36235 * 168.81317 * 10 9 7 42 42 H 0.97000 * 117.94092 * 182.22610 * 13 11 10 43 43 H 1.08999 * 109.46326 * 181.06371 * 16 14 13 44 44 H 1.09003 * 109.49444 * 298.56288 * 17 16 14 45 45 H 1.09001 * 109.49674 * 58.66164 * 17 16 14 46 46 H 1.08999 * 109.58492 * 294.84524 * 18 17 16 47 47 H 1.09001 * 109.70103 * 174.49479 * 18 17 16 48 48 H 0.96998 * 120.00038 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.58910 * 293.82317 * 28 19 18 50 50 H 1.08992 * 109.58638 * 173.39421 * 28 19 18 51 51 H 1.09006 * 109.49646 * 301.33441 * 29 16 14 52 52 H 1.09001 * 109.49896 * 61.43165 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6098 0.0002 7 6 5.6858 2.6098 0.0014 8 1 6.0520 1.7683 -0.5867 9 6 6.1992 2.4932 1.4417 10 6 7.7184 2.3162 1.4016 11 6 8.3321 3.3467 0.4978 12 8 9.5218 3.5611 0.5964 13 7 7.6388 4.0388 -0.4070 14 6 6.1992 3.9184 -0.6005 15 1 5.7020 4.7580 -0.1148 16 6 5.8865 3.9433 -2.0981 17 6 6.5732 2.7587 -2.7820 18 6 6.2297 2.7670 -4.2749 19 7 6.5872 4.0774 -4.8351 20 6 7.4027 4.1685 -5.9314 21 1 8.0183 5.0441 -6.0753 22 6 7.4380 3.1354 -6.8579 23 7 6.4697 2.2444 -6.8874 24 14 8.8600 3.0096 -8.0627 25 1 9.8976 2.1020 -7.5108 26 1 8.3671 2.4698 -9.3555 27 1 9.4455 4.3569 -8.2800 28 6 6.0536 5.2882 -4.1964 29 6 6.3990 5.2516 -2.7044 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.7357 3.4498 -0.0001 38 1 5.9527 3.4001 1.9937 39 1 5.7398 1.6317 1.9263 40 1 7.9545 1.3199 1.0277 41 1 8.1222 2.4305 2.4077 42 1 8.1230 4.6615 -0.9715 43 1 4.8089 3.8724 -2.2453 44 1 7.6528 2.8421 -2.6565 45 1 6.2251 1.8281 -2.3337 46 1 5.1616 2.5930 -4.4050 47 1 6.7921 1.9855 -4.7857 48 1 6.4942 1.5228 -7.5351 49 1 4.9712 5.3198 -4.3202 50 1 6.5017 6.1703 -4.6537 51 1 5.9270 6.0953 -2.2009 52 1 7.4802 5.3114 -2.5797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130266401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:46 Heat of formation + Delta-G solvation = -98.112059 kcal Electronic energy + Delta-G solvation = -31306.760143 eV Core-core repulsion = 27304.573567 eV Total energy + Delta-G solvation = -4002.186576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.01151 -40.49094 -39.45920 -37.74255 -35.56746 -35.17025 -34.69207 -33.49333 -32.32692 -31.47948 -29.99198 -28.40294 -26.99698 -25.37992 -24.42178 -23.55814 -22.78085 -22.32381 -21.35670 -20.91225 -20.02355 -18.77270 -18.18999 -17.95502 -17.17904 -17.02191 -16.75224 -16.59624 -16.12043 -15.71341 -15.49679 -15.33365 -15.06808 -15.01162 -14.88017 -14.72966 -14.59726 -14.19394 -13.92843 -13.89493 -13.36955 -13.18036 -13.03600 -12.82342 -12.70594 -12.66536 -12.60253 -12.57570 -12.25846 -12.06360 -11.98717 -11.97198 -11.92519 -11.74153 -11.57187 -11.24086 -11.10439 -10.84703 -10.73046 -10.57726 -10.06333 -10.03431 -8.69486 -7.90493 -5.34692 1.41315 1.44342 1.51995 1.59214 1.73316 2.00232 2.47641 2.47982 3.23809 3.38502 3.52833 3.62015 3.70810 3.85192 3.88547 4.03907 4.07940 4.12452 4.13853 4.19470 4.32793 4.45138 4.49505 4.56328 4.64712 4.71233 4.75573 4.77998 4.80205 4.84582 4.90665 4.94926 4.98404 5.04010 5.08868 5.18459 5.23622 5.27634 5.29275 5.33640 5.37635 5.46157 5.52072 5.52963 5.63159 5.73968 5.76164 6.33953 6.36831 6.62981 7.12924 7.16476 7.36446 7.86342 8.35740 9.15186 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.003888 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.942154 B = 7200.667025 C = 9188.425956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.510 3.490 5 O -0.586 6.586 6 N -0.706 5.706 7 C 0.132 3.868 8 H 0.071 0.929 9 C -0.119 4.119 10 C -0.128 4.128 11 C 0.515 3.485 12 O -0.609 6.609 13 N -0.700 5.700 14 C 0.150 3.850 15 H 0.122 0.878 16 C -0.079 4.079 17 C -0.118 4.118 18 C 0.182 3.818 19 N -0.610 5.610 20 C -0.261 4.261 21 H 0.065 0.935 22 C -0.050 4.050 23 N -0.933 5.933 24 Si 0.960 3.040 25 H -0.292 1.292 26 H -0.293 1.293 27 H -0.266 1.266 28 C 0.140 3.860 29 C -0.119 4.119 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.420 0.580 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.401 0.599 43 H 0.092 0.908 44 H 0.038 0.962 45 H 0.051 0.949 46 H -0.004 1.004 47 H 0.039 0.961 48 H 0.248 0.752 49 H 0.021 0.979 50 H 0.051 0.949 51 H 0.100 0.900 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 4.035 21.076 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.173 4.173 4 C 0.298 3.702 5 O -0.465 6.465 6 N -0.359 5.359 7 C 0.026 3.974 8 H 0.089 0.911 9 C -0.158 4.158 10 C -0.168 4.168 11 C 0.304 3.696 12 O -0.492 6.492 13 N -0.351 5.351 14 C 0.045 3.955 15 H 0.139 0.861 16 C -0.098 4.098 17 C -0.157 4.157 18 C 0.056 3.944 19 N -0.333 5.333 20 C -0.392 4.392 21 H 0.083 0.917 22 C -0.245 4.245 23 N -0.580 5.580 24 Si 0.788 3.212 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.190 1.190 28 C 0.014 3.986 29 C -0.158 4.158 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.258 0.742 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.238 0.762 43 H 0.110 0.890 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.014 0.986 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.039 0.961 50 H 0.070 0.930 51 H 0.118 0.882 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.842 3.161 21.136 24.432 hybrid contribution 1.017 -0.183 -1.750 2.032 sum -10.825 2.978 19.386 22.402 Atomic orbital electron populations 1.21757 0.93798 1.02201 1.02768 1.21261 0.96675 0.95361 1.01744 1.21765 0.88866 0.99860 1.06767 1.21398 0.91681 0.82958 0.74158 1.90716 1.71611 1.33126 1.51086 1.45694 1.05431 1.09572 1.75201 1.21105 0.81619 0.97748 0.96932 0.91095 1.21974 0.93098 1.04637 0.96065 1.21588 0.96675 0.97853 1.00723 1.20690 0.86255 0.81794 0.80885 1.90736 1.17903 1.68577 1.71993 1.45622 1.09277 1.43190 1.37060 1.21307 0.80370 0.98259 0.95575 0.86079 1.21353 1.00979 0.94970 0.92501 1.21995 0.99285 0.97792 0.96671 1.20464 0.95438 0.87971 0.90533 1.44297 1.56346 1.01487 1.31212 1.19518 1.15749 1.04653 0.99232 0.91693 1.25729 0.99702 0.99768 0.99343 1.70176 1.32089 1.17492 1.38206 0.85364 0.79501 0.78087 0.78221 1.21936 1.21987 1.19043 1.21081 0.95817 0.88889 0.92763 1.21983 1.00555 0.97207 0.96083 0.92124 0.92740 0.91078 0.92487 0.93896 0.87103 0.85545 0.74185 0.88306 0.90125 0.88637 0.86293 0.76160 0.88993 0.94285 0.93098 0.98616 0.94224 0.94283 0.96115 0.93042 0.88200 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.11 -1.84 5.22 30.60 0.16 -1.68 16 3 C -0.13 -1.63 5.70 29.85 0.17 -1.46 16 4 C 0.51 9.99 7.80 87.66 0.68 10.67 16 5 O -0.59 -17.61 15.65 -3.05 -0.05 -17.66 16 6 N -0.71 -10.12 4.72 -442.10 -2.09 -12.21 16 7 C 0.13 2.49 1.73 45.08 0.08 2.57 16 8 H 0.07 1.94 5.39 -2.39 -0.01 1.93 16 9 C -0.12 -1.86 5.62 30.71 0.17 -1.69 16 10 C -0.13 -2.55 6.03 29.69 0.18 -2.37 16 11 C 0.52 13.88 7.72 87.71 0.68 14.56 16 12 O -0.61 -22.16 17.78 -3.03 -0.05 -22.21 16 13 N -0.70 -16.39 4.42 -446.64 -1.97 -18.37 16 14 C 0.15 2.72 2.35 45.11 0.11 2.82 16 15 H 0.12 1.28 8.13 -2.39 -0.02 1.26 16 16 C -0.08 -1.99 1.94 -10.76 -0.02 -2.01 16 17 C -0.12 -4.32 4.89 30.67 0.15 -4.17 16 18 C 0.18 8.77 5.31 86.36 0.46 9.23 16 19 N -0.61 -29.92 2.99 -699.11 -2.09 -32.02 16 20 C -0.26 -14.47 9.58 84.03 0.81 -13.66 16 21 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 22 C -0.05 -2.85 4.90 84.86 0.42 -2.43 16 23 N -0.93 -56.37 11.22 21.65 0.24 -56.12 16 24 Si 0.96 46.17 29.59 68.60 2.03 48.20 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 C 0.14 5.23 6.52 86.36 0.56 5.79 16 29 C -0.12 -3.17 5.09 30.67 0.16 -3.02 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.42 2.84 8.60 -92.71 -0.80 2.05 16 38 H 0.10 1.05 8.13 -2.39 -0.02 1.03 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.40 10.28 6.73 -92.71 -0.62 9.66 16 43 H 0.09 2.16 7.88 -2.39 -0.02 2.14 16 44 H 0.04 1.55 7.67 -2.39 -0.02 1.54 16 45 H 0.05 1.85 6.16 -2.39 -0.01 1.83 16 46 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.04 2.26 6.06 -2.39 -0.01 2.24 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 51 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 52 H 0.05 1.45 6.51 -2.39 -0.02 1.44 16 Total: -1.00 -79.93 399.16 0.99 -78.94 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.50 Total: 19.27 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 5.47 Total: 12.17 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -5.91 Total: -118.71 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.10 Total: -39.87 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -79.93 0.99 -78.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130266401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.171 kcal (2) G-P(sol) polarization free energy of solvation -79.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds