Wall clock time and date at job start Tue Mar 31 2020 20:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99611 * 2 1 4 4 H 1.08996 * 109.47787 * 0.02562 * 3 2 1 5 5 C 1.53008 * 109.47247 * 120.00178 * 3 2 1 6 6 C 1.52998 * 109.46700 * 294.43045 * 5 3 2 7 7 C 1.53004 * 109.47015 * 239.99764 * 3 2 1 8 8 C 1.50699 * 109.46966 * 65.97899 * 7 3 2 9 9 O 1.21280 * 120.00082 * 5.89559 * 8 7 3 10 10 N 1.34780 * 120.00071 * 185.89827 * 8 7 3 11 11 C 1.47747 * 121.64723 * 359.97438 * 10 8 7 12 12 C 1.53009 * 108.79229 * 271.21851 * 11 10 8 13 13 C 1.50703 * 109.44016 * 304.76566 * 12 11 10 14 14 O 1.21279 * 120.24251 * 296.07906 * 13 12 11 15 15 N 1.35498 * 119.52156 * 116.10098 * 13 12 11 16 16 C 1.47129 * 118.10885 * 180.29853 * 15 13 12 17 17 C 1.53016 * 109.09628 * 99.92923 * 16 15 13 18 18 N 1.47774 * 108.78553 * 301.47896 * 17 16 15 19 19 C 1.36934 * 121.64725 * 276.62943 * 18 17 16 20 20 H 1.08006 * 119.99382 * 30.63747 * 19 18 17 21 21 C 1.38805 * 120.00449 * 210.63923 * 19 18 17 22 22 N 1.31626 * 119.99932 * 10.23278 * 21 19 18 23 23 Si 1.86799 * 120.00090 * 190.24312 * 21 19 18 24 24 H 1.48494 * 109.47155 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47370 * 119.99830 * 23 21 19 26 26 H 1.48507 * 109.46968 * 239.99272 * 23 21 19 27 27 C 1.47748 * 116.70958 * 96.90592 * 18 17 16 28 28 C 1.47772 * 121.65247 * 179.97438 * 10 8 7 29 29 H 1.07999 * 119.99726 * 359.97438 * 1 2 3 30 30 H 1.07993 * 119.99685 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00415 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46771 * 54.43083 * 5 3 2 33 33 H 1.09000 * 109.46861 * 174.42915 * 5 3 2 34 34 H 1.09003 * 109.47140 * 305.16472 * 6 5 3 35 35 H 1.08991 * 109.47250 * 65.16489 * 6 5 3 36 36 H 1.09001 * 109.47106 * 185.16963 * 6 5 3 37 37 H 1.08993 * 109.47470 * 305.97747 * 7 3 2 38 38 H 1.09002 * 109.47479 * 185.97711 * 7 3 2 39 39 H 1.09005 * 109.58636 * 151.42657 * 11 10 8 40 40 H 1.09002 * 109.58783 * 31.01105 * 11 10 8 41 41 H 1.08999 * 109.48141 * 184.77368 * 12 11 10 42 42 H 1.09003 * 109.47328 * 64.74905 * 12 11 10 43 43 H 0.97006 * 120.94964 * 0.31883 * 15 13 12 44 44 H 1.08992 * 109.53530 * 340.04322 * 16 15 13 45 45 H 1.09008 * 109.59760 * 219.84600 * 16 15 13 46 46 H 1.09001 * 109.58241 * 181.69269 * 17 16 15 47 47 H 1.09006 * 109.70127 * 61.34191 * 17 16 15 48 48 H 0.97003 * 119.99707 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.57501 * 345.18764 * 27 18 17 50 50 H 1.09001 * 109.57281 * 105.57913 * 27 18 17 51 51 H 1.08993 * 109.58439 * 170.38567 * 28 10 8 52 52 H 1.08994 * 109.58263 * 290.67008 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3862 1.2493 6 6 2.0562 1.4450 2.4945 7 6 2.9431 1.3862 -1.2492 8 6 2.0694 1.4542 -2.4752 9 8 0.8659 1.5472 -2.3578 10 7 2.6255 1.4116 -3.7023 11 6 4.0870 1.2992 -3.8876 12 6 4.6895 2.7053 -3.9186 13 6 4.0049 3.5209 -4.9849 14 8 4.0991 3.2034 -6.1516 15 7 3.2835 4.6119 -4.6309 16 6 2.6227 5.3817 -5.6964 17 6 1.1448 4.9895 -5.7544 18 7 1.0476 3.5365 -6.0055 19 6 1.1269 3.0191 -7.2709 20 1 1.7219 3.5178 -8.0218 21 6 0.4426 1.8540 -7.5886 22 7 -0.4374 1.3569 -6.7454 23 14 0.7707 0.9914 -9.2127 24 1 1.7962 1.7469 -9.9761 25 1 1.2620 -0.3854 -8.9516 26 1 -0.4857 0.9272 -10.0018 27 6 0.8543 2.6699 -4.8246 28 6 1.8036 1.4751 -4.9287 29 1 -0.5399 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8501 -0.9352 0.0004 32 1 3.5835 0.5057 1.3005 33 1 3.5613 2.2827 1.2007 34 1 1.3528 2.2725 2.4009 35 1 1.5056 0.5096 2.5929 36 1 2.6783 1.5951 3.3769 37 1 3.5783 0.5022 -1.3044 38 1 3.5665 2.2788 -1.1974 39 1 4.2980 0.7904 -4.8282 40 1 4.5179 0.7352 -3.0603 41 1 5.7549 2.6394 -4.1394 42 1 4.5480 3.1827 -2.9490 43 1 3.2053 4.8781 -3.7013 44 1 3.0961 5.1607 -6.6529 45 1 2.7087 6.4476 -5.4847 46 1 0.6538 5.5333 -6.5614 47 1 0.6634 5.2295 -4.8063 48 1 -0.9153 0.5424 -6.9673 49 1 1.0745 3.2336 -3.9180 50 1 -0.1764 2.3164 -4.7958 51 1 2.4514 1.5974 -5.7967 52 1 1.2268 0.5558 -5.0299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131376783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:52 Heat of formation + Delta-G solvation = -22.633698 kcal Electronic energy + Delta-G solvation = -32635.302311 eV Core-core repulsion = 28636.388722 eV Total energy + Delta-G solvation = -3998.913589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.93909 -38.80141 -36.78543 -35.76584 -35.20073 -33.71821 -31.72252 -31.30254 -30.61591 -30.32793 -28.83606 -26.57480 -25.03450 -23.91883 -23.55281 -21.97221 -21.48976 -20.16213 -19.74912 -19.53476 -18.32743 -17.03083 -16.47280 -16.21115 -15.81989 -15.22810 -15.10287 -14.93076 -14.56397 -14.32322 -14.22592 -13.76639 -13.50222 -13.31940 -13.21165 -13.16289 -12.95218 -12.66319 -12.42862 -12.29869 -12.03189 -11.75639 -11.63637 -11.39659 -11.29635 -11.21693 -11.14487 -11.02343 -10.79666 -10.75573 -10.44427 -10.43289 -10.19321 -9.89538 -9.79419 -9.59522 -9.23047 -9.11455 -8.83865 -8.66676 -8.26837 -7.95976 -6.43131 -5.52664 -3.09334 2.59821 3.19466 3.28967 3.45985 3.53729 3.56188 3.59064 3.87181 4.61677 4.67163 4.76824 4.89755 4.99651 5.07972 5.18193 5.25742 5.37380 5.40334 5.45471 5.47599 5.53148 5.58218 5.65623 5.71628 5.72438 5.82699 5.85531 5.89739 5.94394 6.07632 6.09577 6.16632 6.18250 6.24856 6.32275 6.58580 6.66545 6.70072 6.82146 6.89027 7.03305 7.09124 7.11324 7.17339 7.60953 7.89061 8.01626 8.11877 8.22761 8.54787 8.82358 8.94371 9.36867 9.96126 10.58709 11.45391 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.004350 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.913617 B = 6434.613755 C = 7309.624091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.082 0.918 5 C -0.115 4.115 6 C -0.150 4.150 7 C -0.134 4.134 8 C 0.508 3.492 9 O -0.523 6.523 10 N -0.619 5.619 11 C 0.118 3.882 12 C -0.159 4.159 13 C 0.520 3.480 14 O -0.517 6.517 15 N -0.723 5.723 16 C 0.089 3.911 17 C 0.127 3.873 18 N -0.588 5.588 19 C -0.223 4.223 20 H 0.062 0.938 21 C 0.001 3.999 22 N -0.900 5.900 23 Si 0.894 3.106 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.177 3.823 28 C 0.116 3.884 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.390 0.610 44 H 0.085 0.915 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.038 0.962 48 H 0.249 0.751 49 H 0.023 0.977 50 H 0.063 0.937 51 H 0.100 0.900 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.726 2.119 16.185 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C -0.062 4.062 4 H 0.101 0.899 5 C -0.152 4.152 6 C -0.207 4.207 7 C -0.174 4.174 8 C 0.296 3.704 9 O -0.399 6.399 10 N -0.354 5.354 11 C -0.007 4.007 12 C -0.200 4.200 13 C 0.305 3.695 14 O -0.391 6.391 15 N -0.374 5.374 16 C -0.038 4.038 17 C -0.001 4.001 18 N -0.311 5.311 19 C -0.354 4.354 20 H 0.080 0.920 21 C -0.197 4.197 22 N -0.545 5.545 23 Si 0.725 3.275 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.220 1.220 27 C 0.052 3.948 28 C -0.005 4.005 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.223 0.777 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.041 0.959 50 H 0.081 0.919 51 H 0.118 0.882 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.999 1.774 15.344 18.400 hybrid contribution 0.245 -0.574 -0.502 0.801 sum 10.244 1.200 14.842 18.074 Atomic orbital electron populations 1.23714 0.95958 1.01361 0.98814 1.22597 0.95962 0.96977 1.01722 1.20152 0.96579 0.97119 0.92384 0.89940 1.21538 0.97839 1.01658 0.94212 1.21750 0.99776 1.02148 0.97061 1.21771 0.98742 1.03361 0.93523 1.20327 0.88938 0.77237 0.83938 1.90726 1.14695 1.48472 1.85969 1.49199 1.06562 1.72431 1.07222 1.21659 0.81493 0.94458 1.03069 1.22203 1.01303 0.97605 0.98922 1.20276 0.78848 0.80633 0.89716 1.90742 1.61069 1.67822 1.19475 1.46026 1.52433 1.29381 1.09598 1.22313 0.96979 0.92359 0.92126 1.21446 0.92606 0.87712 0.98379 1.44514 1.84754 0.98860 1.02981 1.18923 1.21343 1.07486 0.87607 0.92025 1.25104 0.96820 1.00497 0.97251 1.70016 1.26576 1.22371 1.35532 0.86316 0.77287 0.79519 0.84371 1.20318 1.21903 1.21993 1.21164 0.98661 0.89096 0.85927 1.22607 0.94031 1.00404 0.83432 0.88475 0.89382 0.88388 0.92056 0.92014 0.92749 0.92521 0.93155 0.89688 0.89495 0.89443 0.90399 0.88345 0.90816 0.77749 0.89687 0.92955 0.93126 0.94357 0.94038 0.95856 0.91900 0.88174 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 13.41 29.01 0.39 -1.82 16 2 C -0.15 -1.94 6.99 -36.03 -0.25 -2.19 16 3 C -0.04 -0.49 1.80 -91.77 -0.17 -0.66 16 4 H 0.08 1.09 7.48 -51.93 -0.39 0.70 16 5 C -0.11 -0.99 5.39 -26.73 -0.14 -1.13 16 6 C -0.15 -1.26 9.65 37.16 0.36 -0.91 16 7 C -0.13 -1.53 3.99 -27.88 -0.11 -1.64 16 8 C 0.51 8.48 6.74 -10.98 -0.07 8.41 16 9 O -0.52 -10.80 12.90 5.56 0.07 -10.73 16 10 N -0.62 -10.78 2.44 -171.66 -0.42 -11.20 16 11 C 0.12 1.59 5.51 -3.35 -0.02 1.57 16 12 C -0.16 -1.93 6.19 -27.88 -0.17 -2.11 16 13 C 0.52 8.84 4.72 -10.66 -0.05 8.79 16 14 O -0.52 -11.24 14.89 5.56 0.08 -11.16 16 15 N -0.72 -11.23 4.71 -59.67 -0.28 -11.51 16 16 C 0.09 1.52 6.58 -3.69 -0.02 1.49 16 17 C 0.13 2.57 6.08 -3.34 -0.02 2.55 16 18 N -0.59 -14.46 2.26 -171.20 -0.39 -14.85 16 19 C -0.22 -6.13 8.36 -15.06 -0.13 -6.26 16 20 H 0.06 1.76 7.85 -52.48 -0.41 1.34 16 21 C 0.00 0.04 4.53 -17.43 -0.08 -0.04 16 22 N -0.90 -26.42 10.07 55.49 0.56 -25.86 16 23 Si 0.89 22.67 29.57 -169.99 -5.03 17.64 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 27 C 0.18 4.30 3.55 -3.38 -0.01 4.29 16 28 C 0.12 2.67 3.85 -3.36 -0.01 2.65 16 29 H 0.10 1.42 7.83 -52.49 -0.41 1.01 16 30 H 0.09 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.50 7.57 -51.93 -0.39 0.11 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.84 7.21 -51.93 -0.37 0.46 16 38 H 0.09 0.81 7.40 -51.93 -0.38 0.42 16 39 H 0.09 1.32 7.83 -51.93 -0.41 0.91 16 40 H 0.08 0.77 6.56 -51.93 -0.34 0.43 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.71 7.18 -51.93 -0.37 0.34 16 43 H 0.39 4.98 8.70 -40.82 -0.36 4.63 16 44 H 0.08 1.70 7.02 -51.93 -0.36 1.34 16 45 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 46 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 47 H 0.04 0.74 7.77 -51.93 -0.40 0.34 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.02 0.54 6.00 -51.93 -0.31 0.23 16 50 H 0.06 1.85 6.67 -51.93 -0.35 1.50 16 51 H 0.10 2.54 4.59 -51.93 -0.24 2.31 16 52 H 0.06 1.50 7.60 -51.93 -0.39 1.10 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -33.60 392.14 -8.84 -42.44 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.84 Total: 6.31 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -0.51 Total: 13.00 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.53 Total: -63.42 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.15 Total: -21.89 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.60 -8.84 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131376783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.809 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds