Wall clock time and date at job start Tue Mar 31 2020 20:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99611 * 2 1 4 4 H 1.08996 * 109.47787 * 0.02562 * 3 2 1 5 5 C 1.53008 * 109.47247 * 120.00178 * 3 2 1 6 6 C 1.52998 * 109.46700 * 294.43045 * 5 3 2 7 7 C 1.53004 * 109.47015 * 239.99764 * 3 2 1 8 8 C 1.50699 * 109.46966 * 65.97899 * 7 3 2 9 9 O 1.21280 * 120.00082 * 5.89559 * 8 7 3 10 10 N 1.34780 * 120.00071 * 185.89827 * 8 7 3 11 11 C 1.47747 * 121.64723 * 359.97438 * 10 8 7 12 12 C 1.53009 * 108.79229 * 271.21851 * 11 10 8 13 13 C 1.50703 * 109.44016 * 304.76566 * 12 11 10 14 14 O 1.21279 * 120.24251 * 296.07906 * 13 12 11 15 15 N 1.35498 * 119.52156 * 116.10098 * 13 12 11 16 16 C 1.47129 * 118.10885 * 180.29853 * 15 13 12 17 17 C 1.53016 * 109.09628 * 99.92923 * 16 15 13 18 18 N 1.47774 * 108.78553 * 301.47896 * 17 16 15 19 19 C 1.36934 * 121.64725 * 276.62943 * 18 17 16 20 20 H 1.08006 * 119.99382 * 30.63747 * 19 18 17 21 21 C 1.38805 * 120.00449 * 210.63923 * 19 18 17 22 22 N 1.31626 * 119.99932 * 10.23278 * 21 19 18 23 23 Si 1.86799 * 120.00090 * 190.24312 * 21 19 18 24 24 H 1.48494 * 109.47155 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47370 * 119.99830 * 23 21 19 26 26 H 1.48507 * 109.46968 * 239.99272 * 23 21 19 27 27 C 1.47748 * 116.70958 * 96.90592 * 18 17 16 28 28 C 1.47772 * 121.65247 * 179.97438 * 10 8 7 29 29 H 1.07999 * 119.99726 * 359.97438 * 1 2 3 30 30 H 1.07993 * 119.99685 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00415 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46771 * 54.43083 * 5 3 2 33 33 H 1.09000 * 109.46861 * 174.42915 * 5 3 2 34 34 H 1.09003 * 109.47140 * 305.16472 * 6 5 3 35 35 H 1.08991 * 109.47250 * 65.16489 * 6 5 3 36 36 H 1.09001 * 109.47106 * 185.16963 * 6 5 3 37 37 H 1.08993 * 109.47470 * 305.97747 * 7 3 2 38 38 H 1.09002 * 109.47479 * 185.97711 * 7 3 2 39 39 H 1.09005 * 109.58636 * 151.42657 * 11 10 8 40 40 H 1.09002 * 109.58783 * 31.01105 * 11 10 8 41 41 H 1.08999 * 109.48141 * 184.77368 * 12 11 10 42 42 H 1.09003 * 109.47328 * 64.74905 * 12 11 10 43 43 H 0.97006 * 120.94964 * 0.31883 * 15 13 12 44 44 H 1.08992 * 109.53530 * 340.04322 * 16 15 13 45 45 H 1.09008 * 109.59760 * 219.84600 * 16 15 13 46 46 H 1.09001 * 109.58241 * 181.69269 * 17 16 15 47 47 H 1.09006 * 109.70127 * 61.34191 * 17 16 15 48 48 H 0.97003 * 119.99707 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.57501 * 345.18764 * 27 18 17 50 50 H 1.09001 * 109.57281 * 105.57913 * 27 18 17 51 51 H 1.08993 * 109.58439 * 170.38567 * 28 10 8 52 52 H 1.08994 * 109.58263 * 290.67008 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3862 1.2493 6 6 2.0562 1.4450 2.4945 7 6 2.9431 1.3862 -1.2492 8 6 2.0694 1.4542 -2.4752 9 8 0.8659 1.5472 -2.3578 10 7 2.6255 1.4116 -3.7023 11 6 4.0870 1.2992 -3.8876 12 6 4.6895 2.7053 -3.9186 13 6 4.0049 3.5209 -4.9849 14 8 4.0991 3.2034 -6.1516 15 7 3.2835 4.6119 -4.6309 16 6 2.6227 5.3817 -5.6964 17 6 1.1448 4.9895 -5.7544 18 7 1.0476 3.5365 -6.0055 19 6 1.1269 3.0191 -7.2709 20 1 1.7219 3.5178 -8.0218 21 6 0.4426 1.8540 -7.5886 22 7 -0.4374 1.3569 -6.7454 23 14 0.7707 0.9914 -9.2127 24 1 1.7962 1.7469 -9.9761 25 1 1.2620 -0.3854 -8.9516 26 1 -0.4857 0.9272 -10.0018 27 6 0.8543 2.6699 -4.8246 28 6 1.8036 1.4751 -4.9287 29 1 -0.5399 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8501 -0.9352 0.0004 32 1 3.5835 0.5057 1.3005 33 1 3.5613 2.2827 1.2007 34 1 1.3528 2.2725 2.4009 35 1 1.5056 0.5096 2.5929 36 1 2.6783 1.5951 3.3769 37 1 3.5783 0.5022 -1.3044 38 1 3.5665 2.2788 -1.1974 39 1 4.2980 0.7904 -4.8282 40 1 4.5179 0.7352 -3.0603 41 1 5.7549 2.6394 -4.1394 42 1 4.5480 3.1827 -2.9490 43 1 3.2053 4.8781 -3.7013 44 1 3.0961 5.1607 -6.6529 45 1 2.7087 6.4476 -5.4847 46 1 0.6538 5.5333 -6.5614 47 1 0.6634 5.2295 -4.8063 48 1 -0.9153 0.5424 -6.9673 49 1 1.0745 3.2336 -3.9180 50 1 -0.1764 2.3164 -4.7958 51 1 2.4514 1.5974 -5.7967 52 1 1.2268 0.5558 -5.0299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131376783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:51 Heat of formation + Delta-G solvation = -45.439617 kcal Electronic energy + Delta-G solvation = -32636.291250 eV Core-core repulsion = 28636.388722 eV Total energy + Delta-G solvation = -3999.902528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.28180 -40.11839 -37.94227 -37.41992 -36.55187 -35.28421 -33.19028 -32.57250 -31.95729 -31.56628 -30.30190 -28.30510 -26.54427 -25.15895 -24.98251 -23.34982 -22.41978 -21.99248 -21.12769 -20.51089 -19.60810 -18.55749 -18.15379 -17.46946 -17.37841 -16.57801 -16.52260 -16.30059 -16.02961 -15.57480 -15.36064 -15.12484 -15.10632 -14.66005 -14.56257 -14.47098 -14.17158 -14.09129 -13.69552 -13.57630 -13.22307 -13.09712 -12.95985 -12.89231 -12.80115 -12.73116 -12.32066 -12.27790 -12.07628 -12.00854 -11.89539 -11.82666 -11.76515 -11.60521 -11.52341 -11.27473 -10.70604 -10.50805 -10.47043 -9.98354 -9.84583 -9.46832 -8.48762 -7.68253 -5.27432 1.38782 1.41718 1.51865 1.57816 1.92071 2.00515 2.22431 2.52372 2.67950 3.37745 3.63800 3.75996 3.90840 3.98070 4.00444 4.13823 4.36894 4.43059 4.43746 4.47256 4.53884 4.54123 4.59706 4.63555 4.71657 4.73765 4.79584 4.81711 4.87817 4.89246 4.96419 5.05054 5.08993 5.09210 5.14322 5.17224 5.25901 5.29340 5.34138 5.48305 5.54807 5.69508 5.80429 5.84342 5.87753 5.92529 6.10378 6.40918 6.79592 6.91371 7.22175 7.50013 7.70085 7.90033 8.47699 9.25555 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.004350 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.913617 B = 6434.613755 C = 7309.624091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.146 4.146 3 C -0.043 4.043 4 H 0.057 0.943 5 C -0.106 4.106 6 C -0.152 4.152 7 C -0.121 4.121 8 C 0.501 3.499 9 O -0.572 6.572 10 N -0.621 5.621 11 C 0.113 3.887 12 C -0.148 4.148 13 C 0.507 3.493 14 O -0.572 6.572 15 N -0.715 5.715 16 C 0.102 3.898 17 C 0.120 3.880 18 N -0.600 5.600 19 C -0.214 4.214 20 H 0.049 0.951 21 C -0.045 4.045 22 N -0.926 5.926 23 Si 0.945 3.055 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.292 1.292 27 C 0.201 3.799 28 C 0.144 3.856 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.064 0.936 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.113 0.887 43 H 0.408 0.592 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.044 0.956 47 H 0.049 0.951 48 H 0.241 0.759 49 H 0.035 0.965 50 H 0.005 0.995 51 H 0.076 0.924 52 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.614 2.979 18.820 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.164 4.164 3 C -0.062 4.062 4 H 0.076 0.924 5 C -0.143 4.143 6 C -0.210 4.210 7 C -0.160 4.160 8 C 0.291 3.709 9 O -0.450 6.450 10 N -0.356 5.356 11 C -0.010 4.010 12 C -0.189 4.189 13 C 0.295 3.705 14 O -0.451 6.451 15 N -0.368 5.368 16 C -0.024 4.024 17 C -0.007 4.007 18 N -0.324 5.324 19 C -0.345 4.345 20 H 0.067 0.933 21 C -0.240 4.240 22 N -0.574 5.574 23 Si 0.776 3.224 24 H -0.199 1.199 25 H -0.223 1.223 26 H -0.219 1.219 27 C 0.076 3.924 28 C 0.021 3.979 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.083 0.917 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.131 0.869 43 H 0.244 0.756 44 H 0.072 0.928 45 H 0.116 0.884 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.054 0.946 50 H 0.023 0.977 51 H 0.095 0.905 52 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 13.936 2.683 18.034 22.948 hybrid contribution -0.985 -0.772 -1.288 1.796 sum 12.951 1.911 16.746 21.256 Atomic orbital electron populations 1.23684 0.96918 1.00609 1.01487 1.22930 0.95627 0.98510 0.99293 1.20175 0.96643 0.95268 0.94143 0.92433 1.21500 0.97360 1.03482 0.92006 1.21767 0.99908 1.01244 0.98067 1.21831 0.98008 1.06598 0.89581 1.21436 0.89069 0.75532 0.84840 1.90733 1.17339 1.50328 1.86630 1.49152 1.08045 1.72659 1.05709 1.21962 0.78753 0.96033 1.04213 1.22232 1.02164 0.95610 0.98854 1.21274 0.78439 0.80647 0.90157 1.90727 1.63028 1.69062 1.22234 1.45999 1.51562 1.29006 1.10200 1.21981 0.93782 0.94971 0.91705 1.21680 0.95270 0.85046 0.98671 1.44662 1.84723 1.00872 1.02158 1.18920 1.19923 1.07208 0.88444 0.93302 1.25634 0.97249 1.01421 0.99729 1.70204 1.27883 1.22408 1.36874 0.85507 0.76988 0.78344 0.81603 1.19888 1.22267 1.21950 1.20707 0.95890 0.89637 0.86164 1.21793 0.93346 0.97281 0.85495 0.90459 0.89239 0.86765 0.90361 0.89889 0.93793 0.93542 0.91517 0.86592 0.85572 0.91728 0.85097 0.85240 0.86905 0.75630 0.92782 0.88418 0.93755 0.93213 0.94967 0.94649 0.97708 0.90545 0.97353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.35 13.41 67.77 0.91 -4.44 16 2 C -0.15 -3.43 6.99 25.64 0.18 -3.25 16 3 C -0.04 -0.85 1.80 -11.54 -0.02 -0.87 16 4 H 0.06 1.44 7.48 -2.39 -0.02 1.43 16 5 C -0.11 -1.32 5.39 30.60 0.16 -1.16 16 6 C -0.15 -2.16 9.65 71.98 0.69 -1.46 16 7 C -0.12 -2.14 3.99 29.85 0.12 -2.02 16 8 C 0.50 15.75 6.74 87.66 0.59 16.34 16 9 O -0.57 -23.99 12.90 -3.03 -0.04 -24.03 16 10 N -0.62 -20.78 2.44 -815.41 -1.99 -22.77 16 11 C 0.11 2.63 5.51 86.14 0.47 3.10 16 12 C -0.15 -2.87 6.19 29.85 0.18 -2.69 16 13 C 0.51 16.12 4.72 87.54 0.41 16.53 16 14 O -0.57 -24.79 14.89 -3.03 -0.05 -24.83 16 15 N -0.72 -20.31 4.71 -460.67 -2.17 -22.48 16 16 C 0.10 3.34 6.58 86.26 0.57 3.90 16 17 C 0.12 4.85 6.08 86.14 0.52 5.38 16 18 N -0.60 -30.46 2.26 -695.57 -1.57 -32.03 16 19 C -0.21 -12.20 8.36 84.03 0.70 -11.50 16 20 H 0.05 2.89 7.85 -2.91 -0.02 2.87 16 21 C -0.05 -2.65 4.53 84.86 0.38 -2.27 16 22 N -0.93 -57.63 10.07 21.65 0.22 -57.41 16 23 Si 0.95 48.48 29.57 68.60 2.03 50.51 16 24 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 26 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 27 C 0.20 10.22 3.55 86.13 0.31 10.52 16 28 C 0.14 6.88 3.85 86.12 0.33 7.22 16 29 H 0.08 2.44 7.83 -2.91 -0.02 2.42 16 30 H 0.09 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.11 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.74 7.57 -2.39 -0.02 0.72 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.12 1.46 7.21 -2.39 -0.02 1.44 16 38 H 0.13 1.37 7.40 -2.39 -0.02 1.35 16 39 H 0.06 1.83 7.83 -2.38 -0.02 1.82 16 40 H 0.13 1.71 6.56 -2.39 -0.02 1.70 16 41 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.11 1.35 7.18 -2.39 -0.02 1.33 16 43 H 0.41 8.69 8.70 -92.70 -0.81 7.89 16 44 H 0.05 2.15 7.02 -2.39 -0.02 2.13 16 45 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.04 1.83 8.13 -2.39 -0.02 1.81 16 47 H 0.05 1.88 7.77 -2.38 -0.02 1.87 16 48 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 49 H 0.04 1.67 6.00 -2.39 -0.01 1.65 16 50 H 0.00 0.31 6.67 -2.39 -0.02 0.29 16 51 H 0.08 4.04 4.59 -2.39 -0.01 4.03 16 52 H 0.01 0.46 7.60 -2.39 -0.02 0.44 16 Total: -1.00 -83.50 392.14 3.05 -80.45 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.10 Total: 19.27 kcal Atomic # 6 Polarization: 26.80 SS G_CDS: 6.52 Total: 33.33 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -5.51 Total: -134.69 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.08 Total: -48.86 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -83.50 3.05 -80.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131376783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.008 kcal (2) G-P(sol) polarization free energy of solvation -83.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds