Wall clock time and date at job start Tue Mar 31 2020 20:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99808 * 2 1 4 4 H 1.08997 * 109.47339 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46973 * 239.99320 * 3 2 1 6 6 C 1.52999 * 109.46941 * 65.00025 * 5 3 2 7 7 C 1.53006 * 109.46909 * 119.99694 * 3 2 1 8 8 C 1.50706 * 109.46719 * 184.99655 * 7 3 2 9 9 O 1.21280 * 119.99990 * 359.97438 * 8 7 3 10 10 N 1.34783 * 119.99680 * 179.97438 * 8 7 3 11 11 C 1.47740 * 121.65368 * 359.72079 * 10 8 7 12 12 C 1.53600 * 108.48102 * 87.79924 * 11 10 8 13 13 C 1.50702 * 109.49530 * 55.01800 * 12 11 10 14 14 O 1.21281 * 120.23860 * 65.63986 * 13 12 11 15 15 N 1.35513 * 119.52162 * 245.66002 * 13 12 11 16 16 C 1.47114 * 118.11130 * 179.97438 * 15 13 12 17 17 C 1.52984 * 109.17543 * 259.43925 * 16 15 13 18 18 N 1.47767 * 108.82213 * 57.74498 * 17 16 15 19 19 C 1.36940 * 121.64657 * 83.02891 * 18 17 16 20 20 H 1.08001 * 119.99624 * 328.40603 * 19 18 17 21 21 C 1.38809 * 120.00114 * 148.39879 * 19 18 17 22 22 N 1.31624 * 119.99737 * 157.57410 * 21 19 18 23 23 Si 1.86796 * 120.00133 * 337.58144 * 21 19 18 24 24 H 1.48498 * 109.47457 * 91.17907 * 23 21 19 25 25 H 1.48508 * 109.47077 * 211.17936 * 23 21 19 26 26 H 1.48498 * 109.46954 * 331.17335 * 23 21 19 27 27 C 1.47738 * 116.71176 * 263.00920 * 18 17 16 28 28 C 1.47770 * 121.65170 * 180.02562 * 10 8 7 29 29 H 1.08004 * 119.99729 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00116 * 179.72553 * 1 2 3 31 31 H 1.08001 * 120.00195 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47113 * 185.00134 * 5 3 2 33 33 H 1.08999 * 109.46981 * 305.00014 * 5 3 2 34 34 H 1.09001 * 109.46907 * 60.00535 * 6 5 3 35 35 H 1.09005 * 109.46960 * 179.97438 * 6 5 3 36 36 H 1.08999 * 109.47306 * 299.99991 * 6 5 3 37 37 H 1.08996 * 109.47057 * 304.99414 * 7 3 2 38 38 H 1.08993 * 109.47197 * 65.00154 * 7 3 2 39 39 H 1.08996 * 109.58504 * 207.43266 * 11 10 8 40 40 H 1.09002 * 109.58480 * 327.84526 * 11 10 8 41 41 H 1.09005 * 109.49863 * 294.98021 * 12 11 10 42 42 H 1.09004 * 109.40597 * 174.99836 * 12 11 10 43 43 H 0.97002 * 120.94481 * 359.94080 * 15 13 12 44 44 H 1.08994 * 109.52282 * 139.52751 * 16 15 13 45 45 H 1.09003 * 109.56815 * 19.37765 * 16 15 13 46 46 H 1.08998 * 109.57954 * 297.94945 * 17 16 15 47 47 H 1.08994 * 109.69112 * 177.61584 * 17 16 15 48 48 H 0.97000 * 119.99492 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.57831 * 14.87151 * 27 18 17 50 50 H 1.09001 * 109.57908 * 254.47591 * 27 18 17 51 51 H 1.09001 * 109.58148 * 69.83911 * 28 10 8 52 52 H 1.08997 * 109.58320 * 190.12077 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3861 -1.2492 6 6 2.0566 1.4305 -2.4953 7 6 2.9430 1.3862 1.2493 8 6 3.6019 2.7401 1.3127 9 8 3.3893 3.5592 0.4440 10 7 4.4274 3.0406 2.3349 11 6 4.7074 2.0729 3.4156 12 6 5.8943 1.1963 2.9889 13 6 7.0662 2.0747 2.6338 14 8 7.6060 2.7471 3.4866 15 7 7.5122 2.1081 1.3546 16 6 8.6578 2.9767 1.0424 17 6 8.1487 4.2685 0.4003 18 7 7.2023 4.9214 1.3286 19 6 7.6362 5.7182 2.3543 20 1 8.5821 5.5138 2.8338 21 6 6.8604 6.7885 2.7777 22 7 7.0172 7.2760 3.9903 23 14 5.5936 7.5369 1.6268 24 1 4.2852 6.8633 1.8254 25 1 5.4538 8.9861 1.9196 26 1 6.0349 7.3565 0.2204 27 6 5.7648 4.6726 1.0952 28 6 5.0922 4.3566 2.4337 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0045 31 1 1.8500 -0.9353 0.0004 32 1 3.5541 2.2878 -1.2055 33 1 3.5906 0.5104 -1.2949 34 1 1.4092 2.3063 -2.4495 35 1 2.6833 1.4887 -3.3852 36 1 1.4457 0.5289 -2.5389 37 1 2.3277 1.2397 2.1370 38 1 3.7084 0.6114 1.2057 39 1 4.9592 2.6095 4.3303 40 1 3.8289 1.4502 3.5851 41 1 5.6121 0.5987 2.1220 42 1 6.1709 0.5360 3.8109 43 1 7.0885 1.5741 0.6645 44 1 9.3254 2.4642 0.3498 45 1 9.1969 3.2137 1.9597 46 1 7.6404 4.0357 -0.5354 47 1 8.9873 4.9364 0.2041 48 1 6.4748 8.0237 4.2862 49 1 5.6457 3.8259 0.4193 50 1 5.3071 5.5595 0.6569 51 1 4.3520 5.1236 2.6615 52 1 5.8436 4.3281 3.2227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131376784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:54 Heat of formation + Delta-G solvation = -40.664178 kcal Electronic energy + Delta-G solvation = -32838.934785 eV Core-core repulsion = 28839.239336 eV Total energy + Delta-G solvation = -3999.695449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.47740 -40.21803 -38.15770 -37.56068 -36.69345 -35.31736 -33.66705 -32.59943 -32.11796 -31.74063 -30.61938 -28.46012 -26.58326 -25.32144 -25.04476 -23.64706 -22.55357 -21.99137 -21.17685 -20.44078 -19.81146 -18.77757 -18.26846 -17.97202 -17.45466 -16.87248 -16.61991 -16.42071 -15.90353 -15.76687 -15.67057 -15.46363 -14.97924 -14.72377 -14.68532 -14.54558 -14.22466 -14.17085 -14.03293 -13.74332 -13.56038 -13.37736 -13.27683 -13.12989 -12.79252 -12.64530 -12.42669 -12.32988 -12.24671 -12.06645 -11.97517 -11.90859 -11.87543 -11.56021 -11.54095 -11.42283 -10.72419 -10.52458 -10.49948 -10.12772 -9.91888 -9.65437 -8.69450 -8.16750 -5.44414 1.24504 1.31496 1.40450 1.48093 1.72375 1.94272 2.08079 2.38675 2.64341 3.03893 3.38922 3.57568 3.85181 3.92482 4.04690 4.13972 4.16264 4.23197 4.34966 4.35974 4.41116 4.45210 4.49296 4.52310 4.59570 4.63260 4.65508 4.69123 4.75058 4.78542 4.88280 4.88674 4.98512 5.02513 5.03116 5.07825 5.10249 5.16679 5.26919 5.30694 5.46954 5.53620 5.54587 5.79289 5.83245 5.92574 6.03322 6.21231 6.58796 6.87743 6.96073 7.28323 7.63932 7.70951 8.11758 9.04637 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012645 B = 0.004711 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.718449 B = 5942.349669 C = 6609.648860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.045 4.045 4 H 0.050 0.950 5 C -0.119 4.119 6 C -0.145 4.145 7 C -0.120 4.120 8 C 0.507 3.493 9 O -0.577 6.577 10 N -0.614 5.614 11 C 0.113 3.887 12 C -0.147 4.147 13 C 0.504 3.496 14 O -0.569 6.569 15 N -0.715 5.715 16 C 0.102 3.898 17 C 0.118 3.882 18 N -0.611 5.611 19 C -0.202 4.202 20 H 0.046 0.954 21 C -0.012 4.012 22 N -0.946 5.946 23 Si 0.924 3.076 24 H -0.288 1.288 25 H -0.314 1.314 26 H -0.281 1.281 27 C 0.152 3.848 28 C 0.112 3.888 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.410 0.590 44 H 0.103 0.897 45 H 0.050 0.950 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.257 0.743 49 H 0.078 0.922 50 H -0.011 1.011 51 H 0.015 0.985 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 -24.209 -8.713 27.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.157 4.157 3 C -0.064 4.064 4 H 0.069 0.931 5 C -0.157 4.157 6 C -0.202 4.202 7 C -0.160 4.160 8 C 0.298 3.702 9 O -0.457 6.457 10 N -0.348 5.348 11 C -0.009 4.009 12 C -0.188 4.188 13 C 0.291 3.709 14 O -0.447 6.447 15 N -0.369 5.369 16 C -0.024 4.024 17 C -0.008 4.008 18 N -0.336 5.336 19 C -0.332 4.332 20 H 0.064 0.936 21 C -0.207 4.207 22 N -0.592 5.592 23 Si 0.757 3.243 24 H -0.216 1.216 25 H -0.243 1.243 26 H -0.207 1.207 27 C 0.027 3.973 28 C -0.012 4.012 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.151 0.849 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.147 0.853 39 H 0.084 0.916 40 H 0.153 0.847 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.246 0.754 44 H 0.121 0.879 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.096 0.904 50 H 0.006 0.994 51 H 0.034 0.966 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.145 -23.185 -8.478 26.326 hybrid contribution -0.711 1.661 -0.432 1.858 sum -9.856 -21.524 -8.910 25.294 Atomic orbital electron populations 1.23976 0.96227 1.02011 1.01192 1.22906 0.95743 0.97557 0.99458 1.20099 0.96528 0.95890 0.93840 0.93117 1.21602 0.98111 1.02259 0.93708 1.21700 0.99676 1.01241 0.97598 1.21815 1.00752 0.92589 1.00804 1.21480 0.77851 0.90932 0.79981 1.90686 1.63119 1.52265 1.39620 1.49001 1.45816 1.14919 1.25038 1.22141 0.98664 0.91027 0.89055 1.22329 0.92617 0.97972 1.05912 1.21319 0.84952 0.82065 0.82565 1.90807 1.59680 1.44390 1.49828 1.45985 1.34691 1.46272 1.09905 1.21931 0.88572 0.91454 1.00491 1.21809 0.93491 0.93772 0.91723 1.44896 1.00811 1.55098 1.32755 1.18356 1.05033 1.03264 1.06576 0.93633 1.25587 1.00084 0.98177 0.96839 1.69986 1.43837 1.28205 1.17172 0.86334 0.80550 0.76412 0.81040 1.21560 1.24269 1.20716 1.21335 0.83899 0.96956 0.95073 1.22150 0.94963 0.83673 1.00408 0.89948 0.86891 0.84922 0.92909 0.90286 0.94740 0.92859 0.91661 0.86750 0.85285 0.91553 0.84712 0.86449 0.85410 0.75399 0.87947 0.93114 0.91664 0.92746 0.93335 0.90385 0.99391 0.96648 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.51 14.32 67.78 0.97 -1.54 16 2 C -0.14 -1.70 7.75 25.65 0.20 -1.50 16 3 C -0.04 -0.79 1.80 -11.54 -0.02 -0.81 16 4 H 0.05 1.22 7.60 -2.39 -0.02 1.20 16 5 C -0.12 -2.29 5.18 30.59 0.16 -2.13 16 6 C -0.14 -2.70 9.73 71.98 0.70 -2.00 16 7 C -0.12 -1.91 3.84 29.85 0.11 -1.79 16 8 C 0.51 14.36 6.73 87.66 0.59 14.95 16 9 O -0.58 -21.86 12.36 -3.03 -0.04 -21.89 16 10 N -0.61 -19.05 2.42 -814.02 -1.97 -21.01 16 11 C 0.11 2.50 5.55 86.34 0.48 2.97 16 12 C -0.15 -2.71 6.20 30.05 0.19 -2.52 16 13 C 0.50 15.56 4.75 87.54 0.42 15.97 16 14 O -0.57 -25.22 15.08 -3.03 -0.05 -25.26 16 15 N -0.72 -18.82 4.70 -460.74 -2.16 -20.99 16 16 C 0.10 3.14 6.57 86.26 0.57 3.70 16 17 C 0.12 4.35 6.09 86.13 0.52 4.87 16 18 N -0.61 -29.09 1.96 -695.44 -1.36 -30.45 16 19 C -0.20 -11.73 8.69 84.03 0.73 -11.00 16 20 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 21 C -0.01 -0.70 4.63 84.86 0.39 -0.31 16 22 N -0.95 -61.58 13.97 21.65 0.30 -61.28 16 23 Si 0.92 51.51 23.64 68.60 1.62 53.13 16 24 H -0.29 -16.15 5.77 99.48 0.57 -15.57 16 25 H -0.31 -17.61 7.11 99.48 0.71 -16.91 16 26 H -0.28 -15.53 6.97 99.48 0.69 -14.83 16 27 C 0.15 6.98 3.44 86.17 0.30 7.27 16 28 C 0.11 5.03 3.85 86.17 0.33 5.36 16 29 H 0.08 1.25 7.83 -2.91 -0.02 1.23 16 30 H 0.11 1.05 8.06 -2.91 -0.02 1.02 16 31 H 0.13 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.05 1.40 5.88 -2.39 -0.01 1.39 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.06 1.01 7.38 -2.39 -0.02 0.99 16 37 H 0.11 1.37 7.51 -2.39 -0.02 1.35 16 38 H 0.13 1.12 7.06 -2.39 -0.02 1.11 16 39 H 0.07 1.87 7.80 -2.39 -0.02 1.85 16 40 H 0.14 1.60 6.77 -2.39 -0.02 1.59 16 41 H 0.12 1.17 6.85 -2.38 -0.02 1.15 16 42 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.41 7.57 8.71 -92.71 -0.81 6.76 16 44 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.05 2.01 7.02 -2.39 -0.02 1.99 16 46 H 0.07 2.10 7.76 -2.39 -0.02 2.08 16 47 H 0.05 2.05 8.13 -2.39 -0.02 2.03 16 48 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 49 H 0.08 3.18 5.89 -2.39 -0.01 3.17 16 50 H -0.01 -0.60 4.10 -2.39 -0.01 -0.61 16 51 H 0.02 0.79 6.23 -2.39 -0.01 0.77 16 52 H 0.09 4.88 4.72 -2.39 -0.01 4.87 16 Total: -1.00 -86.52 383.52 2.95 -83.57 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -0.03 Total: 12.69 kcal Atomic # 6 Polarization: 24.86 SS G_CDS: 6.64 Total: 31.50 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -5.19 Total: -133.73 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -0.08 Total: -47.15 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 1.62 Total: 53.13 kcal Total: -86.52 2.95 -83.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131376784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.901 kcal (2) G-P(sol) polarization free energy of solvation -86.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds