Wall clock time and date at job start Tue Mar 31 2020 20:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47364 * 2 1 4 4 H 1.09000 * 109.46927 * 304.99940 * 3 2 1 5 5 C 1.53000 * 109.47445 * 65.00066 * 3 2 1 6 6 C 1.53004 * 109.47195 * 184.99898 * 3 2 1 7 7 C 1.50700 * 109.47208 * 174.99698 * 6 3 2 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 3 10 10 C 1.47287 * 135.92023 * 359.35132 * 9 7 6 11 11 C 1.52531 * 87.57424 * 154.00363 * 10 9 7 12 12 C 1.47301 * 135.91070 * 179.72673 * 9 7 6 13 13 C 1.53129 * 116.54115 * 268.65492 * 11 10 9 14 14 C 1.54691 * 104.56541 * 228.35887 * 13 11 10 15 15 N 1.48661 * 104.65895 * 23.67954 * 14 13 11 16 16 C 1.46902 * 111.00404 * 201.53623 * 15 14 13 17 17 C 1.50700 * 109.46873 * 290.12642 * 16 15 14 18 18 O 1.21289 * 120.00435 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99806 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99815 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00226 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00003 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99822 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99904 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47290 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46943 * 120.00256 * 24 22 20 27 27 H 1.48498 * 109.47278 * 240.00185 * 24 22 20 28 28 C 1.48847 * 104.43471 * 321.21756 * 15 14 13 29 29 H 1.09001 * 109.46944 * 60.00119 * 1 2 3 30 30 H 1.08989 * 109.47473 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46793 * 300.00360 * 1 2 3 32 32 H 1.08994 * 109.46995 * 239.99392 * 2 1 3 33 33 H 1.09001 * 109.46944 * 119.99880 * 2 1 3 34 34 H 1.09000 * 109.47161 * 60.00017 * 5 3 2 35 35 H 1.09003 * 109.47289 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.46667 * 299.99759 * 5 3 2 37 37 H 1.09009 * 109.46730 * 54.99604 * 6 3 2 38 38 H 1.08998 * 109.46846 * 295.00148 * 6 3 2 39 39 H 1.09001 * 113.51832 * 268.66039 * 10 9 7 40 40 H 1.09003 * 113.51586 * 39.25724 * 10 9 7 41 41 H 1.08995 * 113.52061 * 320.74079 * 12 9 7 42 42 H 1.09000 * 113.51757 * 91.34993 * 12 9 7 43 43 H 1.09000 * 110.42378 * 347.12387 * 13 11 10 44 44 H 1.08992 * 110.41969 * 109.58996 * 13 11 10 45 45 H 1.08996 * 110.40391 * 142.47466 * 14 13 11 46 46 H 1.09000 * 110.40209 * 264.77154 * 14 13 11 47 47 H 1.09001 * 109.46757 * 50.12047 * 16 15 14 48 48 H 1.08994 * 109.47547 * 170.12485 * 16 15 14 49 49 H 0.97001 * 120.00309 * 0.02562 * 19 17 16 50 50 H 0.97002 * 120.00368 * 180.02562 * 23 22 20 51 51 H 1.09007 * 110.47088 * 279.67310 * 28 15 14 52 52 H 1.09004 * 110.47592 * 157.07134 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0572 2.8632 -0.2493 8 8 3.2661 3.7825 -0.2384 9 7 5.3758 3.1102 -0.3781 10 6 6.6044 2.2992 -0.4271 11 6 7.2408 3.4292 -1.2300 12 6 6.2182 4.3096 -0.5245 13 6 7.1226 3.3365 -2.7539 14 6 8.5569 3.5967 -3.2719 15 7 9.4400 3.2337 -2.1324 16 6 10.7525 3.8817 -2.2563 17 6 11.5116 3.2636 -3.4021 18 8 11.0090 2.3709 -4.0513 19 7 12.7492 3.7029 -3.7054 20 6 13.4400 3.1403 -4.7475 21 1 12.9924 2.3453 -5.3255 22 6 14.7157 3.5935 -5.0606 23 7 15.2601 4.5611 -4.3576 24 14 15.6571 2.8264 -6.4799 25 1 14.8297 1.7643 -7.1062 26 1 15.9685 3.8704 -7.4891 27 1 16.9215 2.2351 -5.9731 28 6 8.7141 3.7249 -0.9293 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0700 1.5875 2.1492 35 1 1.9984 3.1544 1.3071 36 1 0.5490 2.1253 1.3968 37 1 3.8571 0.8798 -1.0113 38 1 4.0030 0.9834 0.7597 39 1 7.0642 2.1468 0.5493 40 1 6.4919 1.3730 -0.9907 41 1 5.7815 5.0717 -1.1699 42 1 6.5717 4.7115 0.4250 43 1 6.7861 2.3428 -3.0496 44 1 6.4389 4.0978 -3.1293 45 1 8.7700 2.9647 -4.1340 46 1 8.6821 4.6477 -3.5321 47 1 10.6156 4.9467 -2.4437 48 1 11.3142 3.7446 -1.3323 49 1 13.1514 4.4167 -3.1861 50 1 16.1505 4.8778 -4.5764 51 1 8.8695 4.7963 -0.8013 52 1 9.0381 3.1830 -0.0408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147451866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:36 Heat of formation + Delta-G solvation = -40.477156 kcal Electronic energy + Delta-G solvation = -29110.823360 eV Core-core repulsion = 25111.136021 eV Total energy + Delta-G solvation = -3999.687339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22609 -39.33167 -38.27990 -36.73248 -36.18879 -33.88934 -31.83930 -31.25594 -30.90699 -29.60616 -28.15028 -27.06077 -26.38984 -25.30466 -24.19202 -23.66353 -21.38705 -20.40086 -19.68276 -19.21105 -18.63281 -17.84614 -17.13924 -16.49307 -16.04672 -16.01969 -15.56073 -15.12674 -15.02027 -14.74466 -14.52179 -14.33614 -14.15120 -13.86179 -13.76530 -13.44722 -13.11701 -12.99195 -12.78905 -12.41432 -12.27642 -12.18532 -12.13437 -11.88614 -11.66128 -11.56075 -11.50030 -11.31502 -11.17547 -11.13490 -11.12660 -10.94257 -10.86772 -10.82315 -10.45227 -10.34790 -10.23127 -9.81771 -9.50864 -8.92218 -8.52637 -8.04815 -7.95233 -6.42351 -3.83061 2.42779 2.58096 3.15682 3.26369 3.33368 3.80706 3.90573 4.11349 4.14687 4.30202 4.37948 4.43654 4.55256 4.69927 4.77868 4.84161 4.94445 5.06414 5.10542 5.15648 5.19432 5.23295 5.24753 5.30749 5.32520 5.37346 5.38433 5.46456 5.49393 5.51615 5.62344 5.65608 5.65863 5.74180 5.76081 5.77374 5.81485 5.85486 5.89864 5.94538 6.10064 6.13407 6.20040 6.26243 6.42069 7.06483 7.17130 7.51424 7.54811 7.96419 8.05900 8.61309 9.17895 9.54148 10.05936 10.75514 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030680 B = 0.001733 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.417577 B =16155.251715 C =16690.570974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.131 4.131 7 C 0.542 3.458 8 O -0.541 6.541 9 N -0.647 5.647 10 C 0.116 3.884 11 C -0.097 4.097 12 C 0.115 3.885 13 C -0.095 4.095 14 C 0.038 3.962 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.046 3.954 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.039 0.961 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.050 0.950 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.929 -3.388 12.217 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.171 4.171 7 C 0.333 3.667 8 O -0.418 6.418 9 N -0.383 5.383 10 C -0.006 4.006 11 C -0.098 4.098 12 C -0.008 4.008 13 C -0.133 4.133 14 C -0.090 4.090 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.082 4.082 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.641 -4.044 11.799 25.849 hybrid contribution 0.939 1.040 -0.273 1.428 sum -21.702 -3.003 11.526 24.756 Atomic orbital electron populations 1.21804 0.95691 1.01479 1.02075 1.21591 0.96209 0.95984 1.02007 1.20934 0.92617 0.96112 0.99883 0.90393 1.21992 1.01198 1.02019 0.95876 1.21715 0.97566 0.93561 1.04234 1.20307 0.79560 0.91693 0.75187 1.90672 1.53405 1.47058 1.50697 1.49794 1.04221 1.11498 1.72794 1.23071 0.81484 0.96154 0.99918 1.22116 0.94430 0.96680 0.96616 1.22924 0.87723 0.90171 0.99939 1.21986 0.97318 1.02612 0.91349 1.23243 0.90320 0.99512 0.95906 1.65212 1.01045 1.52994 1.01419 1.22067 0.91476 0.96315 0.99913 1.19692 0.83288 0.86735 0.87242 1.90503 1.68911 1.32662 1.54069 1.41869 1.13551 1.34527 1.30312 1.19746 0.97217 1.17645 1.08124 0.87872 1.25252 0.97099 0.96603 0.99008 1.69618 1.16821 1.27572 1.40358 0.85810 0.79218 0.78915 0.80466 1.19239 1.20810 1.20761 1.22891 0.90911 0.98868 0.95578 0.92708 0.92844 0.92434 0.91919 0.91948 0.93445 0.90882 0.92680 0.88905 0.89046 0.89295 0.89767 0.90280 0.89644 0.90522 0.91146 0.88113 0.94291 0.93197 0.89232 0.77528 0.91955 0.93138 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 37.16 0.36 -0.58 16 2 C -0.12 -0.78 5.40 -26.73 -0.14 -0.92 16 3 C -0.08 -0.62 2.04 -90.62 -0.18 -0.81 16 4 H 0.08 0.76 7.95 -51.93 -0.41 0.34 16 5 C -0.15 -1.32 8.69 37.16 0.32 -1.00 16 6 C -0.13 -1.05 5.00 -27.88 -0.14 -1.19 16 7 C 0.54 6.04 7.79 -10.98 -0.09 5.96 16 8 O -0.54 -7.86 14.74 5.55 0.08 -7.78 16 9 N -0.65 -6.45 3.68 -185.18 -0.68 -7.13 16 10 C 0.12 0.98 7.70 -7.65 -0.06 0.92 16 11 C -0.10 -0.95 1.29 -154.94 -0.20 -1.14 16 12 C 0.12 1.08 7.92 -7.77 -0.06 1.02 16 13 C -0.09 -1.08 6.53 -25.78 -0.17 -1.25 16 14 C 0.04 0.56 5.82 -1.96 -0.01 0.55 16 15 N -0.48 -7.37 5.06 -231.59 -1.17 -8.55 16 16 C 0.03 0.58 5.30 -4.97 -0.03 0.55 16 17 C 0.45 10.20 7.58 -10.98 -0.08 10.11 16 18 O -0.58 -15.16 14.43 5.55 0.08 -15.08 16 19 N -0.57 -14.05 5.29 -10.96 -0.06 -14.10 16 20 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 24 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.05 0.50 5.95 -2.62 -0.02 0.49 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.29 8.14 -51.94 -0.42 -0.13 16 31 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.81 5.95 -51.93 -0.31 0.50 16 36 H 0.05 0.43 6.57 -51.93 -0.34 0.09 16 37 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.61 7.99 -51.93 -0.41 0.20 16 40 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 41 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 44 H 0.07 0.76 7.83 -51.93 -0.41 0.35 16 45 H 0.10 1.81 6.93 -51.93 -0.36 1.45 16 46 H 0.04 0.57 7.82 -51.93 -0.41 0.16 16 47 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 48 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 49 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 51 H 0.05 0.50 7.98 -51.93 -0.41 0.09 16 52 H 0.09 0.83 7.86 -51.93 -0.41 0.42 16 LS Contribution 410.67 15.07 6.19 6.19 Total: -1.00 -32.47 410.67 -9.69 -42.16 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -9.09 Total: 7.19 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.74 Total: 4.85 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -1.19 Total: -53.33 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.16 Total: -22.86 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.47 -9.69 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147451866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.679 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds