Wall clock time and date at job start Tue Mar 31 2020 20:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47364 * 2 1 4 4 H 1.09000 * 109.46927 * 304.99940 * 3 2 1 5 5 C 1.53000 * 109.47445 * 65.00066 * 3 2 1 6 6 C 1.53004 * 109.47195 * 184.99898 * 3 2 1 7 7 C 1.50700 * 109.47208 * 174.99698 * 6 3 2 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 3 10 10 C 1.47287 * 135.92023 * 359.35132 * 9 7 6 11 11 C 1.52531 * 87.57424 * 154.00363 * 10 9 7 12 12 C 1.47301 * 135.91070 * 179.72673 * 9 7 6 13 13 C 1.53129 * 116.54115 * 268.65492 * 11 10 9 14 14 C 1.54691 * 104.56541 * 228.35887 * 13 11 10 15 15 N 1.48661 * 104.65895 * 23.67954 * 14 13 11 16 16 C 1.46902 * 111.00404 * 201.53623 * 15 14 13 17 17 C 1.50700 * 109.46873 * 290.12642 * 16 15 14 18 18 O 1.21289 * 120.00435 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99806 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99815 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00226 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00003 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99822 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99904 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47290 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46943 * 120.00256 * 24 22 20 27 27 H 1.48498 * 109.47278 * 240.00185 * 24 22 20 28 28 C 1.48847 * 104.43471 * 321.21756 * 15 14 13 29 29 H 1.09001 * 109.46944 * 60.00119 * 1 2 3 30 30 H 1.08989 * 109.47473 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46793 * 300.00360 * 1 2 3 32 32 H 1.08994 * 109.46995 * 239.99392 * 2 1 3 33 33 H 1.09001 * 109.46944 * 119.99880 * 2 1 3 34 34 H 1.09000 * 109.47161 * 60.00017 * 5 3 2 35 35 H 1.09003 * 109.47289 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.46667 * 299.99759 * 5 3 2 37 37 H 1.09009 * 109.46730 * 54.99604 * 6 3 2 38 38 H 1.08998 * 109.46846 * 295.00148 * 6 3 2 39 39 H 1.09001 * 113.51832 * 268.66039 * 10 9 7 40 40 H 1.09003 * 113.51586 * 39.25724 * 10 9 7 41 41 H 1.08995 * 113.52061 * 320.74079 * 12 9 7 42 42 H 1.09000 * 113.51757 * 91.34993 * 12 9 7 43 43 H 1.09000 * 110.42378 * 347.12387 * 13 11 10 44 44 H 1.08992 * 110.41969 * 109.58996 * 13 11 10 45 45 H 1.08996 * 110.40391 * 142.47466 * 14 13 11 46 46 H 1.09000 * 110.40209 * 264.77154 * 14 13 11 47 47 H 1.09001 * 109.46757 * 50.12047 * 16 15 14 48 48 H 1.08994 * 109.47547 * 170.12485 * 16 15 14 49 49 H 0.97001 * 120.00309 * 0.02562 * 19 17 16 50 50 H 0.97002 * 120.00368 * 180.02562 * 23 22 20 51 51 H 1.09007 * 110.47088 * 279.67310 * 28 15 14 52 52 H 1.09004 * 110.47592 * 157.07134 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0572 2.8632 -0.2493 8 8 3.2661 3.7825 -0.2384 9 7 5.3758 3.1102 -0.3781 10 6 6.6044 2.2992 -0.4271 11 6 7.2408 3.4292 -1.2300 12 6 6.2182 4.3096 -0.5245 13 6 7.1226 3.3365 -2.7539 14 6 8.5569 3.5967 -3.2719 15 7 9.4400 3.2337 -2.1324 16 6 10.7525 3.8817 -2.2563 17 6 11.5116 3.2636 -3.4021 18 8 11.0090 2.3709 -4.0513 19 7 12.7492 3.7029 -3.7054 20 6 13.4400 3.1403 -4.7475 21 1 12.9924 2.3453 -5.3255 22 6 14.7157 3.5935 -5.0606 23 7 15.2601 4.5611 -4.3576 24 14 15.6571 2.8264 -6.4799 25 1 14.8297 1.7643 -7.1062 26 1 15.9685 3.8704 -7.4891 27 1 16.9215 2.2351 -5.9731 28 6 8.7141 3.7249 -0.9293 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0700 1.5875 2.1492 35 1 1.9984 3.1544 1.3071 36 1 0.5490 2.1253 1.3968 37 1 3.8571 0.8798 -1.0113 38 1 4.0030 0.9834 0.7597 39 1 7.0642 2.1468 0.5493 40 1 6.4919 1.3730 -0.9907 41 1 5.7815 5.0717 -1.1699 42 1 6.5717 4.7115 0.4250 43 1 6.7861 2.3428 -3.0496 44 1 6.4389 4.0978 -3.1293 45 1 8.7700 2.9647 -4.1340 46 1 8.6821 4.6477 -3.5321 47 1 10.6156 4.9467 -2.4437 48 1 11.3142 3.7446 -1.3323 49 1 13.1514 4.4167 -3.1861 50 1 16.1505 4.8778 -4.5764 51 1 8.8695 4.7963 -0.8013 52 1 9.0381 3.1830 -0.0408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147451866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:36 Heat of formation + Delta-G solvation = -62.565620 kcal Electronic energy + Delta-G solvation = -29111.781188 eV Core-core repulsion = 25111.136021 eV Total energy + Delta-G solvation = -4000.645167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05394 -40.41125 -39.76401 -37.76748 -37.02454 -35.85831 -33.31524 -32.71520 -31.70107 -30.48748 -29.07297 -28.20634 -27.08350 -26.64449 -25.45912 -24.42632 -22.57857 -21.05218 -20.98758 -20.38251 -19.86829 -19.42162 -17.97500 -17.71889 -17.21957 -16.83062 -16.66989 -16.35483 -16.22413 -15.89378 -15.71104 -15.47854 -15.43183 -14.87303 -14.77004 -14.38528 -14.32661 -13.93725 -13.65863 -13.54414 -13.42936 -13.33052 -12.93713 -12.89746 -12.81870 -12.77703 -12.50842 -12.38292 -12.26013 -12.21963 -12.21211 -12.10472 -11.94974 -11.78033 -11.55075 -11.46236 -11.41215 -11.27883 -10.65648 -10.26722 -9.97745 -9.70666 -9.31521 -8.44624 -5.92694 1.37568 1.42788 1.56567 1.62993 1.83982 2.09690 2.30126 2.81005 3.22509 3.22784 3.40964 3.47458 3.65940 3.79071 3.83118 3.96721 4.00240 4.16499 4.25450 4.34625 4.42909 4.44734 4.46395 4.55848 4.57317 4.60031 4.60773 4.67136 4.68317 4.71150 4.75678 4.81428 4.85234 4.88468 4.91078 4.95773 4.98434 5.14146 5.16632 5.17110 5.23492 5.24090 5.30475 5.43354 5.50294 5.57423 5.88096 5.95521 6.12389 6.63839 6.74814 7.15722 7.16239 7.60384 8.16595 8.73051 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030680 B = 0.001733 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.417577 B =16155.251715 C =16690.570974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.075 4.075 4 H 0.055 0.945 5 C -0.149 4.149 6 C -0.125 4.125 7 C 0.534 3.466 8 O -0.583 6.583 9 N -0.650 5.650 10 C 0.122 3.878 11 C -0.092 4.092 12 C 0.115 3.885 13 C -0.086 4.086 14 C 0.039 3.961 15 N -0.504 5.504 16 C 0.047 3.953 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.577 5.577 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.051 3.949 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.037 0.963 47 H 0.069 0.931 48 H 0.114 0.886 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.065 0.935 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.884 -4.031 13.892 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.094 4.094 4 H 0.074 0.926 5 C -0.207 4.207 6 C -0.165 4.165 7 C 0.326 3.674 8 O -0.464 6.464 9 N -0.385 5.385 10 C 0.000 4.000 11 C -0.093 4.093 12 C -0.007 4.007 13 C -0.124 4.124 14 C -0.089 4.089 15 N -0.228 5.228 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.196 1.196 28 C -0.077 4.077 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.124 0.876 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.086 0.914 48 H 0.132 0.868 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.580 -4.680 13.496 26.719 hybrid contribution 0.887 1.256 -0.797 1.732 sum -21.693 -3.423 12.699 25.369 Atomic orbital electron populations 1.21819 0.95658 1.01984 1.01742 1.21557 0.96233 0.94678 1.02808 1.20904 0.92895 0.96952 0.98687 0.92617 1.21930 1.01448 1.00587 0.96688 1.21749 0.97272 0.91753 1.05704 1.20872 0.79555 0.92490 0.74454 1.90658 1.54519 1.48504 1.52734 1.49875 1.04380 1.12229 1.71998 1.23206 0.80239 0.95599 1.00941 1.21971 0.94106 0.97974 0.95278 1.22999 0.87250 0.89849 1.00648 1.21875 0.95016 1.02631 0.92878 1.23105 0.92463 0.98377 0.95003 1.65146 1.00729 1.53802 1.03101 1.21929 0.91975 0.96655 0.97902 1.20815 0.82634 0.85745 0.87865 1.90481 1.69601 1.34357 1.55716 1.41943 1.14366 1.34931 1.30209 1.19678 0.98404 1.18293 1.09640 0.90413 1.25993 0.97320 0.96828 1.01117 1.69673 1.17278 1.28009 1.41267 0.84897 0.77876 0.78090 0.77634 1.19879 1.19765 1.19628 1.22985 0.90561 1.00052 0.94080 0.93367 0.91889 0.92519 0.91344 0.90831 0.92185 0.93576 0.92336 0.87616 0.87016 0.86760 0.89199 0.91383 0.87592 0.90723 0.90699 0.92238 0.94430 0.91351 0.86775 0.77055 0.91399 0.91657 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.67 71.98 0.70 -1.02 16 2 C -0.12 -1.27 5.40 30.59 0.17 -1.11 16 3 C -0.08 -1.16 2.04 -10.79 -0.02 -1.18 16 4 H 0.06 1.10 7.95 -2.39 -0.02 1.08 16 5 C -0.15 -2.48 8.69 71.98 0.63 -1.85 16 6 C -0.13 -1.77 5.00 29.85 0.15 -1.62 16 7 C 0.53 11.32 7.79 87.66 0.68 12.01 16 8 O -0.58 -17.10 14.74 -3.04 -0.04 -17.15 16 9 N -0.65 -11.58 3.68 -858.18 -3.16 -14.73 16 10 C 0.12 1.65 7.70 83.61 0.64 2.30 16 11 C -0.09 -1.56 1.29 -52.45 -0.07 -1.63 16 12 C 0.12 1.90 7.92 83.53 0.66 2.56 16 13 C -0.09 -1.89 6.53 31.21 0.20 -1.68 16 14 C 0.04 1.15 5.82 86.54 0.50 1.65 16 15 N -0.50 -14.64 5.06 -886.62 -4.49 -19.13 16 16 C 0.05 1.52 5.30 85.56 0.45 1.97 16 17 C 0.44 20.50 7.58 87.66 0.66 21.16 16 18 O -0.62 -33.37 14.43 -3.06 -0.04 -33.41 16 19 N -0.58 -29.12 5.29 -306.98 -1.62 -30.74 16 20 C -0.33 -18.62 9.68 84.04 0.81 -17.80 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.27 13.05 21.66 0.28 -48.98 16 24 Si 0.99 42.73 29.55 68.60 2.03 44.75 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 C 0.05 0.94 5.95 86.01 0.51 1.45 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.63 6.57 -2.39 -0.02 0.61 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 1.03 5.95 -2.39 -0.01 1.02 16 36 H 0.06 0.89 6.57 -2.38 -0.02 0.88 16 37 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 1.05 7.99 -2.39 -0.02 1.03 16 40 H 0.09 1.17 7.95 -2.39 -0.02 1.15 16 41 H 0.07 1.29 7.93 -2.39 -0.02 1.27 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.66 7.85 -2.39 -0.02 1.64 16 44 H 0.07 1.57 7.83 -2.39 -0.02 1.55 16 45 H 0.06 2.25 6.93 -2.39 -0.02 2.23 16 46 H 0.04 1.10 7.82 -2.39 -0.02 1.08 16 47 H 0.07 1.98 7.88 -2.39 -0.02 1.96 16 48 H 0.11 3.15 8.13 -2.39 -0.02 3.13 16 49 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 50 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 51 H 0.07 1.06 7.98 -2.38 -0.02 1.04 16 52 H 0.11 1.58 7.86 -2.38 -0.02 1.56 16 Total: -1.00 -72.92 410.67 0.28 -72.65 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.17 Total: 31.77 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 7.15 Total: 14.97 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -8.98 Total: -113.58 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.09 Total: -50.56 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -72.92 0.28 -72.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147451866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.081 kcal (2) G-P(sol) polarization free energy of solvation -72.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds