Wall clock time and date at job start Tue Mar 31 2020 20:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46525 * 2 1 4 4 H 1.09004 * 109.47675 * 55.00143 * 3 2 1 5 5 C 1.53001 * 109.47211 * 294.99795 * 3 2 1 6 6 C 1.52999 * 109.46856 * 175.00172 * 3 2 1 7 7 C 1.50707 * 109.47188 * 184.99816 * 6 3 2 8 8 O 1.21275 * 119.99748 * 359.97438 * 7 6 3 9 9 N 1.34779 * 119.99821 * 179.97438 * 7 6 3 10 10 C 1.47890 * 134.33985 * 180.02562 * 9 7 6 11 11 C 1.52386 * 85.59352 * 156.48652 * 10 9 7 12 12 C 1.47886 * 134.34474 * 359.97182 * 9 7 6 13 13 C 1.53637 * 116.37921 * 141.33966 * 11 10 9 14 14 C 1.54595 * 102.81370 * 95.34845 * 13 11 10 15 15 N 1.47557 * 107.32808 * 20.84134 * 14 13 11 16 16 C 1.46906 * 110.99755 * 123.21876 * 15 14 13 17 17 C 1.50699 * 109.47140 * 69.87674 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46949 * 60.00154 * 24 22 20 26 26 H 1.48496 * 109.47431 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47561 * 300.00356 * 24 22 20 28 28 C 1.48139 * 108.68546 * 0.87288 * 15 14 13 29 29 H 1.08997 * 109.47367 * 60.00312 * 1 2 3 30 30 H 1.09006 * 109.46478 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47079 * 299.99615 * 1 2 3 32 32 H 1.08990 * 109.47151 * 239.99998 * 2 1 3 33 33 H 1.08998 * 109.46922 * 119.99394 * 2 1 3 34 34 H 1.08998 * 109.47418 * 60.00343 * 5 3 2 35 35 H 1.09006 * 109.47449 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47284 * 300.00234 * 5 3 2 37 37 H 1.09000 * 109.47333 * 64.99774 * 6 3 2 38 38 H 1.08999 * 109.47349 * 304.99362 * 6 3 2 39 39 H 1.09000 * 113.85537 * 42.31825 * 10 9 7 40 40 H 1.09002 * 113.96434 * 270.66536 * 10 9 7 41 41 H 1.08999 * 113.85743 * 89.34816 * 12 9 7 42 42 H 1.08999 * 113.85213 * 317.67871 * 12 9 7 43 43 H 1.09001 * 110.74629 * 337.01966 * 13 11 10 44 44 H 1.09000 * 110.74819 * 213.67876 * 13 11 10 45 45 H 1.08999 * 109.87377 * 261.41188 * 14 13 11 46 46 H 1.08997 * 109.99576 * 140.34369 * 14 13 11 47 47 H 1.09004 * 109.47040 * 189.87611 * 16 15 14 48 48 H 1.09000 * 109.47033 * 309.87564 * 16 15 14 49 49 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 50 50 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 51 51 H 1.08999 * 110.41105 * 96.34150 * 28 15 14 52 52 H 1.09008 * 110.40619 * 218.76786 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1265 -1.3074 6 6 3.5647 1.4444 0.1257 7 6 4.0568 2.8635 0.2492 8 8 3.2659 3.7828 0.2373 9 7 5.3759 3.1110 0.3728 10 6 6.1887 4.3386 0.5121 11 6 7.2328 3.4335 1.1546 12 6 6.5864 2.2629 0.4240 13 6 8.6997 3.7295 0.8068 14 6 9.1571 4.6231 1.9824 15 7 8.2293 4.3825 3.1043 16 6 8.9559 3.9448 4.3037 17 6 9.7598 5.0955 4.8519 18 8 9.7301 6.1742 4.2982 19 7 10.5118 4.9258 5.9574 20 6 11.2428 5.9728 6.4565 21 1 11.2164 6.9334 5.9635 22 6 12.0178 5.7981 7.5965 23 7 12.0496 4.6294 8.1966 24 14 13.0143 7.2244 8.2761 25 1 12.1020 8.3414 8.6302 26 1 13.7482 6.7821 9.4888 27 1 13.9843 7.6839 7.2500 28 6 7.2333 3.3684 2.6872 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 0.5488 2.1252 -1.3970 35 1 1.9987 3.1542 -1.3076 36 1 2.0698 1.5875 -2.1492 37 1 4.0029 0.9837 -0.7597 38 1 3.8570 0.8803 1.0113 39 1 5.7629 5.0741 1.1947 40 1 6.5043 4.7708 -0.4375 41 1 7.0229 2.0582 -0.5535 42 1 6.4727 1.3692 1.0376 43 1 8.7714 4.2681 -0.1381 44 1 9.2818 2.8086 0.7727 45 1 9.1181 5.6718 1.6878 46 1 10.1724 4.3591 2.2782 47 1 8.2438 3.6076 5.0570 48 1 9.6254 3.1249 4.0438 49 1 10.5353 4.0632 6.4004 50 1 12.5908 4.5074 8.9923 51 1 7.5355 2.3772 3.0254 52 1 6.2476 3.6203 3.0787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147451867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:39 Heat of formation + Delta-G solvation = -42.716052 kcal Electronic energy + Delta-G solvation = -29254.090426 eV Core-core repulsion = 25254.306000 eV Total energy + Delta-G solvation = -3999.784425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15607 -39.33016 -38.21914 -36.70353 -36.13026 -33.86157 -31.86549 -31.21960 -30.92765 -29.34041 -28.14495 -27.27037 -26.48597 -25.33237 -24.19054 -23.74610 -21.20476 -20.40763 -19.66428 -19.08185 -18.73909 -17.82687 -17.13614 -16.39389 -16.16421 -15.93523 -15.57578 -15.20993 -15.05141 -14.73322 -14.49184 -14.20034 -14.03792 -13.83095 -13.62069 -13.40188 -13.20281 -13.03893 -12.72943 -12.55888 -12.25844 -12.17830 -12.09458 -11.89267 -11.81855 -11.65522 -11.47266 -11.35739 -11.18392 -11.11184 -11.00743 -10.90725 -10.87224 -10.86414 -10.55741 -10.43181 -10.19881 -9.72769 -9.47221 -8.90110 -8.43876 -7.95110 -7.88758 -6.40080 -3.80744 2.46067 2.58196 3.21110 3.26583 3.31017 3.82123 3.93433 4.06653 4.18446 4.26118 4.39863 4.43643 4.54938 4.66838 4.74844 4.83471 4.93663 5.04088 5.08076 5.13672 5.15100 5.20256 5.25504 5.30132 5.32051 5.37470 5.43092 5.46329 5.53054 5.60458 5.63280 5.64876 5.65490 5.74778 5.76076 5.76277 5.79521 5.90150 5.90225 5.94869 6.08112 6.10774 6.21732 6.30708 6.43144 7.22942 7.24587 7.50528 7.56459 8.00667 8.07897 8.64019 9.20097 9.56590 10.08858 10.77711 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.001821 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.585495 B =15375.582553 C =15820.116021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.131 4.131 7 C 0.534 3.466 8 O -0.537 6.537 9 N -0.646 5.646 10 C 0.128 3.872 11 C -0.103 4.103 12 C 0.116 3.884 13 C -0.130 4.130 14 C 0.058 3.942 15 N -0.505 5.505 16 C 0.041 3.959 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.069 3.931 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.049 0.951 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.052 0.948 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.649 -13.807 -17.941 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.096 4.096 4 H 0.097 0.903 5 C -0.211 4.211 6 C -0.171 4.171 7 C 0.324 3.676 8 O -0.414 6.414 9 N -0.382 5.382 10 C 0.006 3.994 11 C -0.105 4.105 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.070 4.070 15 N -0.229 5.229 16 C -0.091 4.091 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.204 5.204 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.059 4.059 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.075 0.925 47 H 0.105 0.895 48 H 0.067 0.933 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.070 0.930 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.463 -12.210 -18.018 26.699 hybrid contribution 1.120 -0.776 0.561 1.473 sum -14.344 -12.986 -17.457 26.060 Atomic orbital electron populations 1.21809 0.95678 1.01452 1.02146 1.21587 0.96244 0.96019 1.01873 1.20938 0.92657 0.96058 0.99960 0.90316 1.21990 1.01210 1.02081 0.95796 1.21716 0.97637 0.93792 1.03962 1.20416 0.80192 0.91648 0.75366 1.90682 1.53513 1.47004 1.50239 1.50264 1.04139 1.10708 1.73106 1.22936 0.87014 0.89398 1.00015 1.22428 0.95329 0.96174 0.96536 1.23036 0.82159 0.95351 1.00154 1.22645 0.93606 1.00627 1.00011 1.22770 0.95081 1.00433 0.88678 1.63317 1.14779 1.41002 1.03755 1.22082 0.97089 0.96336 0.93548 1.19738 0.84110 0.89600 0.83632 1.90521 1.67361 1.27148 1.60893 1.41855 1.40780 1.13664 1.24067 1.19644 1.21687 0.92935 1.08510 0.88008 1.25246 0.98271 0.97783 0.96665 1.69605 1.41281 1.22797 1.20804 0.85923 0.79536 0.80700 0.78086 1.19917 1.21017 1.19957 1.22623 0.97660 0.94406 0.91199 0.92408 0.92879 0.92658 0.92031 0.91988 0.92669 0.90811 0.93528 0.89211 0.89082 0.89164 0.89638 0.89257 0.89767 0.90313 0.90850 0.89829 0.92494 0.89509 0.93303 0.77563 0.91884 0.93017 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 37.16 0.36 -0.58 16 2 C -0.12 -0.75 5.40 -26.73 -0.14 -0.90 16 3 C -0.08 -0.63 2.04 -90.62 -0.18 -0.82 16 4 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 5 C -0.15 -1.34 8.69 37.16 0.32 -1.02 16 6 C -0.13 -1.01 4.92 -27.88 -0.14 -1.15 16 7 C 0.53 6.03 7.77 -10.98 -0.09 5.94 16 8 O -0.54 -8.13 14.69 5.56 0.08 -8.05 16 9 N -0.65 -6.47 3.62 -186.83 -0.68 -7.14 16 10 C 0.13 1.36 8.14 -3.59 -0.03 1.33 16 11 C -0.10 -0.98 0.99 -154.85 -0.15 -1.14 16 12 C 0.12 0.83 7.98 -3.60 -0.03 0.80 16 13 C -0.13 -1.26 6.35 -25.56 -0.16 -1.42 16 14 C 0.06 0.85 5.67 -2.63 -0.01 0.83 16 15 N -0.50 -8.02 4.86 -233.13 -1.13 -9.15 16 16 C 0.04 0.71 5.03 -4.97 -0.02 0.69 16 17 C 0.44 10.38 7.43 -10.99 -0.08 10.30 16 18 O -0.58 -15.47 15.12 5.55 0.08 -15.39 16 19 N -0.57 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 24 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C 0.07 0.82 6.09 -2.93 -0.02 0.80 16 29 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.07 0.84 5.95 -51.93 -0.31 0.53 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.15 8.12 -51.93 -0.42 0.73 16 40 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 43 H 0.08 0.66 7.99 -51.93 -0.41 0.25 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.06 0.91 7.31 -51.93 -0.38 0.53 16 47 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 48 H 0.05 0.76 7.96 -51.93 -0.41 0.34 16 49 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.05 0.54 7.80 -51.93 -0.40 0.14 16 52 H 0.08 1.04 8.07 -51.92 -0.42 0.62 16 LS Contribution 412.15 15.07 6.21 6.21 Total: -1.00 -33.26 412.15 -9.59 -42.85 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -9.18 Total: 7.03 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.62 Total: 5.71 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -1.14 Total: -54.41 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.26 -9.59 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147451867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.130 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds