Wall clock time and date at job start Tue Mar 31 2020 20:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 H 1.09003 * 109.46653 * 308.09166 * 3 2 1 5 5 C 1.52999 * 109.46921 * 188.09819 * 3 2 1 6 6 C 1.52998 * 109.47258 * 68.09311 * 3 2 1 7 7 H 1.08998 * 109.47051 * 172.64354 * 6 3 2 8 8 N 1.46499 * 109.46937 * 52.65012 * 6 3 2 9 9 C 1.34772 * 120.00557 * 92.07446 * 8 6 3 10 10 C 1.50698 * 120.00428 * 185.07425 * 9 8 6 11 11 O 1.21284 * 119.99939 * 5.07343 * 9 8 6 12 12 C 1.50696 * 109.47120 * 292.64763 * 6 3 2 13 13 O 1.21286 * 119.99626 * 115.89941 * 12 6 3 14 14 N 1.34774 * 120.00232 * 295.89342 * 12 6 3 15 15 C 1.47884 * 134.34458 * 185.74613 * 14 12 6 16 16 C 1.52373 * 85.58922 * 156.52179 * 15 14 12 17 17 C 1.47894 * 134.34080 * 5.75540 * 14 12 6 18 18 C 1.53660 * 116.39142 * 141.36462 * 16 15 14 19 19 C 1.54605 * 102.73071 * 95.48464 * 18 16 15 20 20 N 1.47134 * 107.36775 * 20.75476 * 19 18 16 21 21 C 1.36931 * 125.58703 * 180.93106 * 20 19 18 22 22 H 1.07996 * 120.00004 * 176.46479 * 21 20 19 23 23 C 1.38816 * 120.00235 * 356.45887 * 21 20 19 24 24 N 1.31619 * 120.00379 * 212.42755 * 23 21 20 25 25 Si 1.86804 * 119.99507 * 32.14730 * 23 21 20 26 26 H 1.48493 * 109.47188 * 275.61815 * 25 23 21 27 27 H 1.48493 * 109.47071 * 35.62190 * 25 23 21 28 28 H 1.48504 * 109.46599 * 155.62437 * 25 23 21 29 29 C 1.47729 * 108.82535 * 1.19070 * 20 19 18 30 30 H 1.08998 * 109.47163 * 287.73603 * 1 2 3 31 31 H 1.09002 * 109.47528 * 47.73926 * 1 2 3 32 32 H 1.08999 * 109.47181 * 167.73500 * 1 2 3 33 33 H 1.08998 * 109.47122 * 240.00188 * 2 1 3 34 34 H 1.08999 * 109.46952 * 119.99697 * 2 1 3 35 35 H 1.08999 * 109.47046 * 305.49619 * 5 3 2 36 36 H 1.09002 * 109.47289 * 65.50021 * 5 3 2 37 37 H 1.09004 * 109.46962 * 185.49729 * 5 3 2 38 38 H 0.97008 * 120.00191 * 272.07866 * 8 6 3 39 39 H 1.08997 * 109.46875 * 59.99987 * 10 9 8 40 40 H 1.09004 * 109.47186 * 180.02562 * 10 9 8 41 41 H 1.09006 * 109.46914 * 300.00086 * 10 9 8 42 42 H 1.09001 * 113.85229 * 42.35777 * 15 14 12 43 43 H 1.08996 * 113.97489 * 270.70015 * 15 14 12 44 44 H 1.09005 * 113.85249 * 89.31441 * 17 14 12 45 45 H 1.09002 * 113.85255 * 317.65117 * 17 14 12 46 46 H 1.09004 * 110.75356 * 337.17670 * 18 16 15 47 47 H 1.08994 * 110.91533 * 213.86802 * 18 16 15 48 48 H 1.09004 * 109.86545 * 261.30672 * 19 18 16 49 49 H 1.09002 * 109.97522 * 140.26953 * 19 18 16 50 50 H 0.96999 * 119.99306 * 354.70134 * 24 23 21 51 51 H 1.08997 * 110.39594 * 96.07367 * 29 20 19 52 52 H 1.08996 * 110.39684 * 218.48253 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5633 1.9963 -0.8088 5 6 3.5564 1.4473 -0.2032 6 6 1.7026 2.1028 1.3383 7 1 2.1773 3.0826 1.3900 8 7 2.1937 1.2638 2.4343 9 6 3.4239 1.4726 2.9437 10 6 3.9741 0.5393 3.9912 11 8 4.0881 2.4117 2.5592 12 6 0.2087 2.2614 1.4577 13 8 -0.3969 1.6667 2.3240 14 7 -0.4542 3.0643 0.6019 15 6 -1.8544 3.5277 0.4935 16 6 -1.2810 4.7031 -0.2884 17 6 -0.0709 3.8322 -0.6025 18 6 -2.1036 5.1894 -1.4917 19 6 -2.9274 6.3529 -0.8935 20 7 -2.2356 6.7992 0.3260 21 6 -2.6558 7.8015 1.1590 22 1 -2.1068 8.0177 2.0635 23 6 -3.7876 8.5397 0.8409 24 7 -3.8655 9.8071 1.1872 25 14 -5.1966 7.7363 -0.0858 26 1 -4.9177 7.7778 -1.5437 27 1 -5.3354 6.3241 0.3518 28 1 -6.4569 8.4688 0.1980 29 6 -1.0100 5.9931 0.5010 30 1 -0.3633 0.3131 0.9788 31 1 -0.3634 0.6911 -0.7606 32 1 -0.3633 -1.0042 -0.2183 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.0257 0.8131 0.5488 36 1 3.7910 1.0666 -1.1973 37 1 3.9328 2.4656 -0.1060 38 1 1.6336 0.5579 2.7933 39 1 4.0248 -0.4715 3.5865 40 1 4.9731 0.8660 4.2802 41 1 3.3222 0.5488 4.8648 42 1 -2.3008 3.8087 1.4474 43 1 -2.4929 2.8732 -0.0997 44 1 -0.1621 3.2694 -1.5316 45 1 0.8826 4.3519 -0.5090 46 1 -2.7597 4.3987 -1.8559 47 1 -1.4525 5.5471 -2.2892 48 1 -3.9306 6.0069 -0.6446 49 1 -2.9855 7.1739 -1.6080 50 1 -3.1676 10.2050 1.7308 51 1 -0.1478 6.5188 0.0908 52 1 -0.8517 5.7665 1.5553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148819949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:18 Heat of formation + Delta-G solvation = -3.699135 kcal Electronic energy + Delta-G solvation = -31506.413945 eV Core-core repulsion = 27508.321421 eV Total energy + Delta-G solvation = -3998.092525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.31009 -40.09278 -38.63354 -36.59326 -35.97099 -33.74052 -32.45792 -31.07564 -30.22639 -29.88165 -28.93658 -27.51485 -26.25964 -25.54995 -23.72166 -23.13371 -21.37066 -20.81225 -20.22858 -19.61327 -18.55627 -17.68047 -17.33302 -17.02108 -16.52845 -16.14497 -15.69516 -15.27954 -15.10442 -14.85564 -14.68825 -14.09417 -13.89093 -13.61381 -13.48200 -13.37644 -13.24404 -13.14468 -12.95008 -12.86242 -12.67318 -12.38258 -12.24605 -12.07229 -11.90718 -11.81418 -11.58869 -11.24988 -11.19557 -11.00284 -10.89657 -10.74722 -10.60600 -10.39575 -10.19734 -10.13188 -9.81906 -9.67540 -9.26737 -9.19565 -8.74772 -8.35075 -7.09954 -6.39264 -3.12894 2.34409 2.42986 2.54772 3.09623 3.40165 3.49526 3.67014 4.08249 4.36906 4.42237 4.49997 4.55513 4.59182 4.71128 4.77808 4.87929 4.96087 5.05091 5.10196 5.18639 5.20756 5.26759 5.28868 5.29222 5.33022 5.41284 5.44230 5.47344 5.52728 5.61439 5.65997 5.72295 5.78317 5.79664 5.81954 5.90619 5.92989 6.04089 6.06689 6.15418 6.18112 6.20064 6.45122 6.49700 6.53665 6.76516 7.25172 7.58398 7.68997 7.93305 8.01621 8.33090 9.03661 9.60228 10.26421 11.12076 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.003033 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.351409 B = 9230.914188 C = 9790.911615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.116 4.116 3 C -0.099 4.099 4 H 0.085 0.915 5 C -0.139 4.139 6 C 0.132 3.868 7 H 0.117 0.883 8 N -0.710 5.710 9 C 0.514 3.486 10 C -0.174 4.174 11 O -0.543 6.543 12 C 0.543 3.457 13 O -0.543 6.543 14 N -0.634 5.634 15 C 0.130 3.870 16 C -0.109 4.109 17 C 0.113 3.887 18 C -0.113 4.113 19 C 0.108 3.892 20 N -0.608 5.608 21 C -0.340 4.340 22 H 0.078 0.922 23 C -0.017 4.017 24 N -0.910 5.910 25 Si 1.064 2.936 26 H -0.292 1.292 27 H -0.293 1.293 28 H -0.300 1.300 29 C 0.166 3.834 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.409 0.591 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.034 0.966 49 H 0.043 0.957 50 H 0.264 0.736 51 H 0.033 0.967 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.313 -22.855 -4.232 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.153 4.153 3 C -0.119 4.119 4 H 0.103 0.897 5 C -0.196 4.196 6 C 0.023 3.977 7 H 0.135 0.865 8 N -0.364 5.364 9 C 0.301 3.699 10 C -0.233 4.233 11 O -0.420 6.420 12 C 0.332 3.668 13 O -0.423 6.423 14 N -0.368 5.368 15 C 0.008 3.992 16 C -0.111 4.111 17 C -0.010 4.010 18 C -0.151 4.151 19 C -0.017 4.017 20 N -0.336 5.336 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.219 4.219 24 N -0.550 5.550 25 Si 0.898 3.102 26 H -0.220 1.220 27 H -0.221 1.221 28 H -0.228 1.228 29 C 0.040 3.960 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.246 0.754 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.051 0.949 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.050 0.950 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.090 -22.235 -4.505 25.707 hybrid contribution 1.099 -0.750 0.868 1.589 sum 13.189 -22.985 -3.637 26.749 Atomic orbital electron populations 1.22361 0.95609 1.01781 1.04416 1.21548 0.96155 0.95530 1.02112 1.21628 0.97738 0.97130 0.95412 0.89666 1.21785 0.93886 1.02800 1.01161 1.20810 0.91354 0.97472 0.88027 0.86534 1.45734 1.17187 1.36954 1.36496 1.20796 0.80966 0.85776 0.82359 1.21911 1.03436 0.99706 0.98256 1.90733 1.58782 1.31098 1.61381 1.20045 0.88973 0.76920 0.80811 1.90664 1.69420 1.46200 1.35978 1.50093 1.12307 1.46958 1.27490 1.22989 0.83356 0.91803 1.01002 1.22622 0.95315 0.95452 0.97685 1.23154 0.99543 0.90596 0.87742 1.22332 0.98368 0.98329 0.96119 1.21791 0.95322 0.94695 0.89887 1.44834 1.22729 1.40699 1.25321 1.19920 1.12027 1.08982 1.05715 0.90465 1.25645 0.99965 0.94285 1.01976 1.70923 1.40237 1.08108 1.35755 0.83863 0.76520 0.74223 0.75610 1.21965 1.22132 1.22802 1.21098 0.90693 0.87280 0.96969 0.89821 0.92836 0.92972 0.91847 0.91787 0.92839 0.92578 0.91776 0.75426 0.89375 0.88833 0.89253 0.89408 0.89629 0.89117 0.89517 0.91022 0.90558 0.94896 0.93919 0.92566 0.94968 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.64 37.16 0.32 -1.47 16 2 C -0.12 -0.97 5.28 -26.73 -0.14 -1.11 16 3 C -0.10 -0.89 2.33 -90.62 -0.21 -1.10 16 4 H 0.09 0.72 6.08 -51.93 -0.32 0.40 16 5 C -0.14 -1.23 8.01 37.16 0.30 -0.94 16 6 C 0.13 1.47 2.14 -69.09 -0.15 1.32 16 7 H 0.12 1.48 7.29 -51.93 -0.38 1.11 16 8 N -0.71 -7.15 3.71 -54.94 -0.20 -7.35 16 9 C 0.51 5.36 6.55 -10.99 -0.07 5.29 16 10 C -0.17 -1.10 10.32 36.00 0.37 -0.73 16 11 O -0.54 -7.70 15.51 5.55 0.09 -7.61 16 12 C 0.54 7.20 4.74 -10.99 -0.05 7.14 16 13 O -0.54 -8.64 14.75 5.55 0.08 -8.56 16 14 N -0.63 -8.03 3.54 -186.92 -0.66 -8.69 16 15 C 0.13 1.83 8.16 -3.60 -0.03 1.80 16 16 C -0.11 -1.55 0.99 -154.72 -0.15 -1.70 16 17 C 0.11 1.19 6.30 -3.60 -0.02 1.17 16 18 C -0.11 -1.62 6.36 -25.55 -0.16 -1.78 16 19 C 0.11 2.21 4.87 -2.85 -0.01 2.20 16 20 N -0.61 -14.46 3.39 -170.35 -0.58 -15.03 16 21 C -0.34 -9.66 10.41 -15.06 -0.16 -9.81 16 22 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 23 C -0.02 -0.51 5.44 -17.43 -0.09 -0.60 16 24 N -0.91 -28.36 13.70 55.49 0.76 -27.60 16 25 Si 1.06 26.34 24.66 -169.99 -4.19 22.15 16 26 H -0.29 -6.73 6.40 56.52 0.36 -6.37 16 27 H -0.29 -6.88 6.47 56.52 0.37 -6.51 16 28 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 29 C 0.17 3.16 6.65 -3.03 -0.02 3.14 16 30 H 0.08 1.01 4.31 -51.93 -0.22 0.79 16 31 H 0.05 0.52 7.96 -51.93 -0.41 0.11 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 34 H 0.06 0.52 6.93 -51.93 -0.36 0.16 16 35 H 0.05 0.50 6.77 -51.93 -0.35 0.15 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 38 H 0.41 3.73 7.62 -40.82 -0.31 3.42 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 43 H 0.09 1.04 8.04 -51.93 -0.42 0.62 16 44 H 0.09 0.73 8.02 -51.93 -0.42 0.32 16 45 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 46 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.03 0.72 4.29 -51.93 -0.22 0.49 16 49 H 0.04 0.94 6.93 -51.93 -0.36 0.58 16 50 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 51 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -34.61 392.90 -7.97 -42.58 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.90 Total: 1.39 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.29 Total: 2.82 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.68 Total: -58.68 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.17 Total: -16.17 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -4.19 Total: 22.15 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.61 -7.97 -42.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148819949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.881 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds