Wall clock time and date at job start Tue Mar 31 2020 20:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 H 1.09003 * 109.46653 * 308.09166 * 3 2 1 5 5 C 1.52999 * 109.46921 * 188.09819 * 3 2 1 6 6 C 1.52998 * 109.47258 * 68.09311 * 3 2 1 7 7 H 1.08998 * 109.47051 * 172.64354 * 6 3 2 8 8 N 1.46499 * 109.46937 * 52.65012 * 6 3 2 9 9 C 1.34772 * 120.00557 * 92.07446 * 8 6 3 10 10 C 1.50698 * 120.00428 * 185.07425 * 9 8 6 11 11 O 1.21284 * 119.99939 * 5.07343 * 9 8 6 12 12 C 1.50696 * 109.47120 * 292.64763 * 6 3 2 13 13 O 1.21286 * 119.99626 * 115.89941 * 12 6 3 14 14 N 1.34774 * 120.00232 * 295.89342 * 12 6 3 15 15 C 1.47884 * 134.34458 * 185.74613 * 14 12 6 16 16 C 1.52373 * 85.58922 * 156.52179 * 15 14 12 17 17 C 1.47894 * 134.34080 * 5.75540 * 14 12 6 18 18 C 1.53660 * 116.39142 * 141.36462 * 16 15 14 19 19 C 1.54605 * 102.73071 * 95.48464 * 18 16 15 20 20 N 1.47134 * 107.36775 * 20.75476 * 19 18 16 21 21 C 1.36931 * 125.58703 * 180.93106 * 20 19 18 22 22 H 1.07996 * 120.00004 * 176.46479 * 21 20 19 23 23 C 1.38816 * 120.00235 * 356.45887 * 21 20 19 24 24 N 1.31619 * 120.00379 * 212.42755 * 23 21 20 25 25 Si 1.86804 * 119.99507 * 32.14730 * 23 21 20 26 26 H 1.48493 * 109.47188 * 275.61815 * 25 23 21 27 27 H 1.48493 * 109.47071 * 35.62190 * 25 23 21 28 28 H 1.48504 * 109.46599 * 155.62437 * 25 23 21 29 29 C 1.47729 * 108.82535 * 1.19070 * 20 19 18 30 30 H 1.08998 * 109.47163 * 287.73603 * 1 2 3 31 31 H 1.09002 * 109.47528 * 47.73926 * 1 2 3 32 32 H 1.08999 * 109.47181 * 167.73500 * 1 2 3 33 33 H 1.08998 * 109.47122 * 240.00188 * 2 1 3 34 34 H 1.08999 * 109.46952 * 119.99697 * 2 1 3 35 35 H 1.08999 * 109.47046 * 305.49619 * 5 3 2 36 36 H 1.09002 * 109.47289 * 65.50021 * 5 3 2 37 37 H 1.09004 * 109.46962 * 185.49729 * 5 3 2 38 38 H 0.97008 * 120.00191 * 272.07866 * 8 6 3 39 39 H 1.08997 * 109.46875 * 59.99987 * 10 9 8 40 40 H 1.09004 * 109.47186 * 180.02562 * 10 9 8 41 41 H 1.09006 * 109.46914 * 300.00086 * 10 9 8 42 42 H 1.09001 * 113.85229 * 42.35777 * 15 14 12 43 43 H 1.08996 * 113.97489 * 270.70015 * 15 14 12 44 44 H 1.09005 * 113.85249 * 89.31441 * 17 14 12 45 45 H 1.09002 * 113.85255 * 317.65117 * 17 14 12 46 46 H 1.09004 * 110.75356 * 337.17670 * 18 16 15 47 47 H 1.08994 * 110.91533 * 213.86802 * 18 16 15 48 48 H 1.09004 * 109.86545 * 261.30672 * 19 18 16 49 49 H 1.09002 * 109.97522 * 140.26953 * 19 18 16 50 50 H 0.96999 * 119.99306 * 354.70134 * 24 23 21 51 51 H 1.08997 * 110.39594 * 96.07367 * 29 20 19 52 52 H 1.08996 * 110.39684 * 218.48253 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5633 1.9963 -0.8088 5 6 3.5564 1.4473 -0.2032 6 6 1.7026 2.1028 1.3383 7 1 2.1773 3.0826 1.3900 8 7 2.1937 1.2638 2.4343 9 6 3.4239 1.4726 2.9437 10 6 3.9741 0.5393 3.9912 11 8 4.0881 2.4117 2.5592 12 6 0.2087 2.2614 1.4577 13 8 -0.3969 1.6667 2.3240 14 7 -0.4542 3.0643 0.6019 15 6 -1.8544 3.5277 0.4935 16 6 -1.2810 4.7031 -0.2884 17 6 -0.0709 3.8322 -0.6025 18 6 -2.1036 5.1894 -1.4917 19 6 -2.9274 6.3529 -0.8935 20 7 -2.2356 6.7992 0.3260 21 6 -2.6558 7.8015 1.1590 22 1 -2.1068 8.0177 2.0635 23 6 -3.7876 8.5397 0.8409 24 7 -3.8655 9.8071 1.1872 25 14 -5.1966 7.7363 -0.0858 26 1 -4.9177 7.7778 -1.5437 27 1 -5.3354 6.3241 0.3518 28 1 -6.4569 8.4688 0.1980 29 6 -1.0100 5.9931 0.5010 30 1 -0.3633 0.3131 0.9788 31 1 -0.3634 0.6911 -0.7606 32 1 -0.3633 -1.0042 -0.2183 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.0257 0.8131 0.5488 36 1 3.7910 1.0666 -1.1973 37 1 3.9328 2.4656 -0.1060 38 1 1.6336 0.5579 2.7933 39 1 4.0248 -0.4715 3.5865 40 1 4.9731 0.8660 4.2802 41 1 3.3222 0.5488 4.8648 42 1 -2.3008 3.8087 1.4474 43 1 -2.4929 2.8732 -0.0997 44 1 -0.1621 3.2694 -1.5316 45 1 0.8826 4.3519 -0.5090 46 1 -2.7597 4.3987 -1.8559 47 1 -1.4525 5.5471 -2.2892 48 1 -3.9306 6.0069 -0.6446 49 1 -2.9855 7.1739 -1.6080 50 1 -3.1676 10.2050 1.7308 51 1 -0.1478 6.5188 0.0908 52 1 -0.8517 5.7665 1.5553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148819949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:17 Heat of formation + Delta-G solvation = -29.120326 kcal Electronic energy + Delta-G solvation = -31507.516291 eV Core-core repulsion = 27508.321421 eV Total energy + Delta-G solvation = -3999.194870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.30869 -41.09447 -39.69542 -37.56268 -37.37520 -34.60683 -34.40203 -32.00849 -31.52660 -30.60845 -30.23533 -28.66802 -27.42670 -26.71522 -24.87725 -24.30362 -22.61354 -22.12782 -21.13985 -20.57102 -19.86973 -19.27943 -18.50751 -17.95630 -17.49044 -17.07848 -16.86551 -16.73807 -16.29747 -15.87527 -15.72299 -15.35018 -15.17947 -14.85786 -14.76105 -14.47013 -14.22295 -14.15169 -13.89188 -13.73361 -13.43662 -13.36320 -13.27494 -13.05026 -12.99158 -12.98482 -12.85957 -12.73023 -12.53108 -11.99590 -11.92762 -11.90289 -11.82667 -11.59894 -11.45585 -11.41754 -11.05143 -10.99948 -10.83134 -10.52563 -10.12593 -9.76984 -9.12878 -8.72663 -5.36479 1.39745 1.42599 1.48810 1.52972 1.66658 1.71260 2.28156 2.52373 2.95913 3.15419 3.20996 3.50871 3.58731 3.68480 3.78128 3.87249 3.92430 4.00801 4.10017 4.28582 4.37242 4.39114 4.42867 4.51333 4.52659 4.56323 4.60241 4.63899 4.67454 4.71948 4.76104 4.78124 4.79158 4.89338 4.94969 4.99870 5.03303 5.04843 5.10093 5.14709 5.18901 5.24692 5.31410 5.34540 5.38437 5.48141 5.56781 6.08598 6.47228 6.59255 6.84196 6.94797 7.18845 7.49902 8.14974 8.80290 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.003033 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.351409 B = 9230.914188 C = 9790.911615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.111 4.111 3 C -0.092 4.092 4 H 0.098 0.902 5 C -0.133 4.133 6 C 0.136 3.864 7 H 0.097 0.903 8 N -0.706 5.706 9 C 0.508 3.492 10 C -0.167 4.167 11 O -0.586 6.586 12 C 0.541 3.459 13 O -0.576 6.576 14 N -0.636 5.636 15 C 0.127 3.873 16 C -0.102 4.102 17 C 0.128 3.872 18 C -0.095 4.095 19 C 0.094 3.906 20 N -0.631 5.631 21 C -0.333 4.333 22 H 0.037 0.963 23 C -0.076 4.076 24 N -0.946 5.946 25 Si 1.110 2.890 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.310 1.310 29 C 0.161 3.839 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.415 0.585 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.049 0.951 43 H 0.118 0.882 44 H 0.138 0.862 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.029 0.971 49 H 0.029 0.971 50 H 0.247 0.753 51 H 0.036 0.964 52 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.831 -26.634 -7.439 30.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.148 4.148 3 C -0.111 4.111 4 H 0.116 0.884 5 C -0.190 4.190 6 C 0.027 3.973 7 H 0.115 0.885 8 N -0.360 5.360 9 C 0.298 3.702 10 C -0.226 4.226 11 O -0.466 6.466 12 C 0.332 3.668 13 O -0.457 6.457 14 N -0.370 5.370 15 C 0.005 3.995 16 C -0.104 4.104 17 C 0.006 3.994 18 C -0.133 4.133 19 C -0.030 4.030 20 N -0.359 5.359 21 C -0.461 4.461 22 H 0.055 0.945 23 C -0.271 4.271 24 N -0.589 5.589 25 Si 0.937 3.063 26 H -0.186 1.186 27 H -0.200 1.200 28 H -0.239 1.239 29 C 0.036 3.964 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.252 0.748 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.067 0.933 43 H 0.135 0.865 44 H 0.155 0.845 45 H 0.114 0.886 46 H 0.130 0.870 47 H 0.122 0.878 48 H 0.046 0.954 49 H 0.047 0.953 50 H 0.057 0.943 51 H 0.054 0.946 52 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 12.647 -26.062 -7.737 29.984 hybrid contribution 1.019 0.471 2.010 2.302 sum 13.666 -25.591 -5.727 29.572 Atomic orbital electron populations 1.22284 0.96359 1.02129 1.02966 1.21519 0.95291 0.95013 1.03001 1.21618 0.97860 0.97583 0.94060 0.88391 1.21718 0.93596 1.01688 1.02010 1.20781 0.89505 0.97205 0.89853 0.88482 1.45780 1.17215 1.36693 1.36282 1.21545 0.80563 0.85655 0.82462 1.21939 1.03322 0.99932 0.97389 1.90714 1.59837 1.33095 1.62991 1.20383 0.89670 0.76503 0.80262 1.90647 1.70189 1.47662 1.37213 1.50132 1.11919 1.46741 1.28228 1.23021 0.84373 0.92475 0.99592 1.22398 0.97689 0.93278 0.96992 1.23351 0.98091 0.89441 0.88496 1.22356 0.98339 0.96696 0.95940 1.22022 0.96155 0.96651 0.88146 1.44912 1.24479 1.40581 1.25901 1.19789 1.11209 1.10181 1.04947 0.94509 1.27042 1.02473 0.94016 1.03526 1.71051 1.40210 1.09725 1.37947 0.83290 0.72662 0.73932 0.76407 1.18609 1.20039 1.23877 1.21201 0.89115 0.89667 0.96442 0.92316 0.92451 0.92359 0.90121 0.91745 0.93634 0.90609 0.93474 0.74771 0.86692 0.88836 0.87923 0.93278 0.86462 0.84469 0.88580 0.87041 0.87831 0.95388 0.95303 0.94326 0.94603 0.96675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 8.64 71.98 0.62 -2.30 16 2 C -0.11 -1.48 5.28 30.59 0.16 -1.32 16 3 C -0.09 -1.38 2.33 -10.79 -0.03 -1.40 16 4 H 0.10 1.22 6.08 -2.39 -0.01 1.21 16 5 C -0.13 -2.05 8.01 71.98 0.58 -1.47 16 6 C 0.14 2.87 2.14 44.24 0.09 2.96 16 7 H 0.10 2.47 7.29 -2.39 -0.02 2.45 16 8 N -0.71 -13.65 3.71 -446.12 -1.65 -15.30 16 9 C 0.51 10.30 6.55 87.66 0.57 10.88 16 10 C -0.17 -1.84 10.32 71.24 0.74 -1.10 16 11 O -0.59 -16.78 15.51 -3.04 -0.05 -16.82 16 12 C 0.54 13.77 4.74 87.66 0.42 14.19 16 13 O -0.58 -18.19 14.75 -3.05 -0.04 -18.24 16 14 N -0.64 -14.73 3.54 -863.68 -3.06 -17.79 16 15 C 0.13 3.29 8.16 85.91 0.70 4.00 16 16 C -0.10 -2.60 0.99 -52.08 -0.05 -2.65 16 17 C 0.13 2.16 6.30 85.90 0.54 2.70 16 18 C -0.10 -2.27 6.36 31.36 0.20 -2.07 16 19 C 0.09 3.66 4.87 86.80 0.42 4.08 16 20 N -0.63 -30.29 3.39 -692.86 -2.35 -32.64 16 21 C -0.33 -19.80 10.41 84.04 0.88 -18.93 16 22 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 23 C -0.08 -4.59 5.44 84.86 0.46 -4.13 16 24 N -0.95 -61.67 13.70 21.65 0.30 -61.38 16 25 Si 1.11 53.42 24.66 68.60 1.69 55.11 16 26 H -0.26 -11.15 6.40 99.48 0.64 -10.51 16 27 H -0.27 -12.13 6.47 99.48 0.64 -11.49 16 28 H -0.31 -15.30 7.11 99.48 0.71 -14.60 16 29 C 0.16 6.15 6.65 86.36 0.57 6.73 16 30 H 0.06 1.30 4.31 -2.39 -0.01 1.29 16 31 H 0.06 0.87 7.96 -2.39 -0.02 0.85 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.85 8.13 -2.39 -0.02 0.83 16 34 H 0.06 0.86 6.93 -2.39 -0.02 0.85 16 35 H 0.04 0.77 6.77 -2.39 -0.02 0.76 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.89 8.04 -2.39 -0.02 0.88 16 38 H 0.41 7.17 7.62 -92.70 -0.71 6.46 16 39 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 41 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 43 H 0.12 2.33 8.04 -2.39 -0.02 2.31 16 44 H 0.14 1.23 8.02 -2.38 -0.02 1.21 16 45 H 0.10 1.53 8.12 -2.39 -0.02 1.51 16 46 H 0.11 1.88 7.99 -2.39 -0.02 1.86 16 47 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.03 1.14 4.29 -2.39 -0.01 1.13 16 49 H 0.03 1.20 6.93 -2.39 -0.02 1.19 16 50 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 51 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.01 0.64 8.08 -2.39 -0.02 0.62 16 Total: -1.00 -82.82 392.90 1.75 -81.07 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.04 Total: 15.84 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 6.88 Total: 10.15 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -6.76 Total: -127.11 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.09 Total: -35.06 kcal Atomic # 14 Polarization: 53.42 SS G_CDS: 1.69 Total: 55.11 kcal Total: -82.82 1.75 -81.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148819949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.949 kcal (2) G-P(sol) polarization free energy of solvation -82.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds