Wall clock time and date at job start Tue Mar 31 2020 20:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47806 * 2 1 4 4 H 1.09003 * 109.46569 * 55.25404 * 3 2 1 5 5 C 1.50697 * 109.47351 * 175.25230 * 3 2 1 6 6 O 1.21279 * 119.99680 * 122.64778 * 5 3 2 7 7 N 1.34778 * 120.00005 * 302.64794 * 5 3 2 8 8 C 1.46500 * 119.99622 * 174.88811 * 7 5 3 9 9 C 1.53005 * 109.46832 * 180.02562 * 8 7 5 10 10 H 1.08991 * 109.47209 * 64.99770 * 9 8 7 11 11 C 1.53004 * 109.46957 * 185.00130 * 9 8 7 12 12 N 1.46503 * 109.46671 * 304.99943 * 9 8 7 13 13 C 1.36934 * 119.99875 * 118.51488 * 12 9 8 14 14 H 1.07999 * 119.99992 * 213.17628 * 13 12 9 15 15 C 1.38811 * 120.00102 * 33.17257 * 13 12 9 16 16 N 1.31611 * 119.99980 * 12.31973 * 15 13 12 17 17 Si 1.86809 * 119.99951 * 192.31828 * 15 13 12 18 18 H 1.48496 * 109.46977 * 89.99999 * 17 15 13 19 19 H 1.48499 * 109.46913 * 210.00195 * 17 15 13 20 20 H 1.48499 * 109.46908 * 330.00069 * 17 15 13 21 21 C 1.46501 * 120.00372 * 298.50465 * 12 9 8 22 22 C 1.52998 * 109.46814 * 95.52498 * 21 12 9 23 23 C 1.50702 * 109.47002 * 295.25706 * 3 2 1 24 24 C 1.41379 * 128.00619 * 119.99651 * 23 3 2 25 25 C 1.50695 * 126.80609 * 359.97438 * 24 23 3 26 26 N 1.30182 * 106.39182 * 179.97438 * 24 23 3 27 27 O 1.20922 * 111.60465 * 359.97438 * 26 24 23 28 28 C 1.34036 * 111.56667 * 359.76735 * 27 26 24 29 29 C 1.50700 * 126.77416 * 180.28617 * 28 27 26 30 30 H 1.09009 * 109.46890 * 305.29703 * 1 2 3 31 31 H 1.09003 * 109.46932 * 65.28694 * 1 2 3 32 32 H 1.09000 * 109.47620 * 185.29066 * 1 2 3 33 33 H 1.08999 * 109.47160 * 239.99749 * 2 1 3 34 34 H 1.09001 * 109.46998 * 120.00247 * 2 1 3 35 35 H 0.96998 * 119.99874 * 354.89087 * 7 5 3 36 36 H 1.09002 * 109.47124 * 299.99730 * 8 7 5 37 37 H 1.08997 * 109.47074 * 60.00520 * 8 7 5 38 38 H 1.09006 * 109.46943 * 59.99710 * 11 9 8 39 39 H 1.08998 * 109.46958 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.47217 * 299.99785 * 11 9 8 41 41 H 0.97007 * 119.99899 * 180.02562 * 16 15 13 42 42 H 1.08998 * 109.47436 * 215.52763 * 21 12 9 43 43 H 1.09006 * 109.46771 * 335.53078 * 21 12 9 44 44 H 1.09004 * 109.47104 * 180.02562 * 22 21 12 45 45 H 1.08998 * 109.47335 * 300.00327 * 22 21 12 46 46 H 1.09006 * 109.46978 * 60.00706 * 22 21 12 47 47 H 1.09001 * 109.47111 * 89.99872 * 25 24 23 48 48 H 1.08993 * 109.47421 * 209.99769 * 25 24 23 49 49 H 1.09002 * 109.46789 * 330.00164 * 25 24 23 50 50 H 1.09000 * 109.47035 * 270.10178 * 29 28 27 51 51 H 1.08994 * 109.47175 * 30.10787 * 29 28 27 52 52 H 1.09001 * 109.47267 * 150.10838 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6090 1.9802 0.8445 5 6 3.5425 1.4439 0.1176 6 8 4.2167 1.9865 -0.7321 7 7 4.1369 0.8423 1.1670 8 6 5.5976 0.7457 1.2249 9 6 6.0103 0.0228 2.5087 10 1 5.6543 -1.0068 2.4765 11 6 7.5355 0.0315 2.6310 12 7 5.4238 0.7065 3.6641 13 6 4.5473 0.0425 4.4801 14 1 3.7387 0.5790 4.9542 15 6 4.6979 -1.3201 4.6980 16 7 5.8051 -1.9273 4.3271 17 14 3.3292 -2.2919 5.5176 18 1 2.4022 -2.8123 4.4807 19 1 3.9135 -3.4281 6.2744 20 1 2.5837 -1.4078 6.4491 21 6 5.7752 2.1004 3.9466 22 6 4.7191 3.0257 3.3387 23 6 1.6361 2.1181 -1.2850 24 6 0.8298 3.2680 -1.4478 25 6 0.1874 4.0823 -0.3546 26 7 0.7524 3.4840 -2.7292 27 8 1.3749 2.6599 -3.3581 28 6 1.9666 1.7682 -2.5511 29 6 2.8274 0.6043 -2.9699 30 1 -0.3633 0.5939 0.8388 31 1 -0.3633 0.4297 -0.9336 32 1 -0.3634 -1.0233 0.0948 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.5976 0.4733 1.8838 36 1 5.9593 0.1871 0.3615 37 1 6.0285 1.7468 1.2166 38 1 7.8915 1.0613 2.6632 39 1 7.8295 -0.4830 3.5459 40 1 7.9718 -0.4771 1.7714 41 1 5.9103 -2.8796 4.4790 42 1 5.8152 2.2537 5.0250 43 1 6.7489 2.3250 3.5112 44 1 4.9807 4.0629 3.5485 45 1 4.6790 2.8724 2.2603 46 1 3.7453 2.8011 3.7741 47 1 0.8697 4.8726 -0.0414 48 1 -0.7360 4.5259 -0.7268 49 1 -0.0361 3.4374 0.4953 50 1 2.2009 -0.2745 -3.1228 51 1 3.3428 0.8492 -3.8986 52 1 3.5612 0.3962 -2.1911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155851012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:37 Heat of formation + Delta-G solvation = 24.893618 kcal Electronic energy + Delta-G solvation = -31910.105019 eV Core-core repulsion = 27913.252369 eV Total energy + Delta-G solvation = -3996.852650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.82358 -39.67010 -37.13245 -35.90241 -34.06848 -33.74435 -32.48132 -31.92603 -31.01171 -28.88849 -28.57912 -28.19773 -27.21023 -25.14179 -23.98008 -22.76374 -21.83717 -21.41404 -20.37484 -19.41511 -19.04971 -17.62565 -17.08289 -17.06231 -16.42384 -15.64378 -15.16137 -14.90188 -14.63266 -14.22303 -13.93451 -13.82389 -13.48995 -13.43681 -13.27997 -13.06912 -12.90199 -12.72522 -12.70532 -12.50102 -12.39241 -12.20772 -11.99996 -11.88032 -11.81641 -11.54725 -11.41485 -11.08701 -10.99244 -10.88414 -10.82787 -10.75523 -10.67650 -10.33063 -10.09192 -9.81992 -9.66251 -9.50600 -9.35909 -8.95025 -8.57492 -8.39537 -6.70613 -5.91732 -3.43718 1.58593 2.26402 3.00251 3.19252 3.25684 3.35308 3.35940 3.77698 4.20354 4.36410 4.51204 4.70586 4.81971 4.98359 5.17579 5.20490 5.23976 5.31736 5.34731 5.41235 5.42364 5.45491 5.52945 5.62503 5.67251 5.79175 5.85930 5.89944 5.93240 6.02264 6.02991 6.07825 6.12289 6.17957 6.24269 6.28703 6.34844 6.46108 6.52346 6.60354 6.65399 6.80205 6.87589 7.05362 7.12252 7.46895 7.57759 7.69970 8.13147 8.37090 8.39332 8.70322 9.12159 9.72697 10.29244 11.13761 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.003825 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.702619 B = 7317.977663 C = 7857.241530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.029 4.029 4 H 0.105 0.895 5 C 0.509 3.491 6 O -0.550 6.550 7 N -0.697 5.697 8 C 0.102 3.898 9 C 0.171 3.829 10 H 0.110 0.890 11 C -0.142 4.142 12 N -0.583 5.583 13 C -0.259 4.259 14 H 0.064 0.936 15 C 0.010 3.990 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.140 3.860 22 C -0.170 4.170 23 C -0.174 4.174 24 C 0.028 3.972 25 C -0.076 4.076 26 N -0.374 5.374 27 O 0.089 5.911 28 C -0.001 4.001 29 C -0.075 4.075 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.411 0.589 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.255 0.745 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.032 0.968 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 3.651 -9.068 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.051 4.051 4 H 0.123 0.877 5 C 0.294 3.706 6 O -0.429 6.429 7 N -0.348 5.348 8 C -0.023 4.023 9 C 0.064 3.936 10 H 0.128 0.872 11 C -0.201 4.201 12 N -0.304 5.304 13 C -0.389 4.389 14 H 0.082 0.918 15 C -0.189 4.189 16 N -0.537 5.537 17 Si 0.728 3.272 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.013 3.987 22 C -0.229 4.229 23 C -0.179 4.179 24 C -0.131 4.131 25 C -0.134 4.134 26 N -0.082 5.082 27 O 0.026 5.974 28 C -0.065 4.065 29 C -0.133 4.133 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.698 4.746 -10.372 13.761 hybrid contribution -0.565 -1.018 1.474 1.879 sum -8.263 3.728 -8.898 12.703 Atomic orbital electron populations 1.21736 0.94998 1.01872 1.01835 1.21604 0.96740 0.93551 1.03594 1.19626 0.93565 0.97377 0.94568 0.87661 1.20290 0.89369 0.78754 0.82165 1.90662 1.65756 1.44882 1.41631 1.45956 1.08728 1.57529 1.22570 1.22185 0.79209 1.00624 1.00324 1.20620 0.91957 0.98225 0.82793 0.87214 1.21988 0.97406 0.99072 1.01667 1.43883 1.51611 1.07842 1.27075 1.19125 1.04903 0.91204 1.23630 0.91836 1.25173 0.96303 0.98413 0.99037 1.69935 1.23933 1.09873 1.49997 0.86367 0.81643 0.79847 0.79333 1.21347 1.21753 1.20463 1.20761 0.94641 0.85732 0.97517 1.22441 1.01084 0.97986 1.01428 1.20189 1.04147 0.98704 0.94824 1.23328 1.00289 0.96703 0.92820 1.20165 1.00243 0.98753 0.94218 1.73791 1.15723 1.11877 1.06788 1.84747 1.48627 1.29721 1.34255 1.24056 0.97839 0.95154 0.89404 1.20446 0.97481 0.91332 1.04002 0.92407 0.92991 0.92307 0.91166 0.90099 0.75171 0.93153 0.92971 0.95245 0.90735 0.94800 0.93507 0.94171 0.94485 0.94918 0.92958 0.93510 0.90199 0.90677 0.90063 0.89979 0.90124 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.63 37.16 0.36 -1.13 16 2 C -0.12 -1.34 5.27 -26.73 -0.14 -1.48 16 3 C -0.03 -0.38 2.48 -92.93 -0.23 -0.62 16 4 H 0.11 1.28 7.34 -51.93 -0.38 0.90 16 5 C 0.51 8.14 6.13 -10.99 -0.07 8.08 16 6 O -0.55 -10.35 14.10 5.56 0.08 -10.27 16 7 N -0.70 -11.57 3.93 -60.29 -0.24 -11.81 16 8 C 0.10 1.84 4.35 -4.04 -0.02 1.83 16 9 C 0.17 3.48 1.93 -67.92 -0.13 3.35 16 10 H 0.11 2.54 5.76 -51.93 -0.30 2.24 16 11 C -0.14 -2.79 9.03 37.16 0.34 -2.45 16 12 N -0.58 -12.44 1.88 -165.66 -0.31 -12.75 16 13 C -0.26 -6.10 9.20 -15.06 -0.14 -6.23 16 14 H 0.06 1.51 7.86 -52.49 -0.41 1.10 16 15 C 0.01 0.25 4.99 -17.43 -0.09 0.16 16 16 N -0.89 -22.67 10.47 55.49 0.58 -22.09 16 17 Si 0.90 19.45 29.57 -169.99 -5.03 14.42 16 18 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 21 C 0.14 2.72 5.72 -4.04 -0.02 2.70 16 22 C -0.17 -2.96 9.90 37.16 0.37 -2.59 16 23 C -0.17 -2.41 3.59 -104.42 -0.38 -2.79 16 24 C 0.03 0.38 7.33 -82.10 -0.60 -0.22 16 25 C -0.08 -0.81 10.26 36.00 0.37 -0.44 16 26 N -0.37 -5.74 12.07 33.42 0.40 -5.33 16 27 O 0.09 1.32 11.20 17.19 0.19 1.52 16 28 C 0.00 -0.02 6.85 -35.30 -0.24 -0.26 16 29 C -0.08 -0.84 8.70 36.01 0.31 -0.53 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.05 0.54 7.55 -51.93 -0.39 0.15 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.78 6.37 -51.93 -0.33 0.45 16 34 H 0.08 0.97 7.39 -51.93 -0.38 0.58 16 35 H 0.41 7.02 7.17 -40.82 -0.29 6.73 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.99 6.99 -51.93 -0.36 0.63 16 38 H 0.03 0.54 6.61 -51.93 -0.34 0.19 16 39 H 0.07 1.67 7.63 -51.93 -0.40 1.27 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.25 6.40 8.31 -40.82 -0.34 6.06 16 42 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 43 H 0.04 0.70 6.36 -51.93 -0.33 0.37 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.94 5.14 -51.93 -0.27 0.68 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 0.73 7.55 -51.93 -0.39 0.34 16 50 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 51 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.10 1.28 5.66 -51.93 -0.29 0.98 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -27.37 402.93 -7.21 -34.58 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -8.65 Total: 8.29 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.31 Total: -2.62 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.44 Total: -51.98 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.27 Total: -8.75 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -27.37 -7.21 -34.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155851012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.475 kcal (2) G-P(sol) polarization free energy of solvation -27.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds