Wall clock time and date at job start Tue Mar 31 2020 20:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47806 * 2 1 4 4 H 1.09003 * 109.46569 * 55.25404 * 3 2 1 5 5 C 1.50697 * 109.47351 * 175.25230 * 3 2 1 6 6 O 1.21279 * 119.99680 * 122.64778 * 5 3 2 7 7 N 1.34778 * 120.00005 * 302.64794 * 5 3 2 8 8 C 1.46500 * 119.99622 * 174.88811 * 7 5 3 9 9 C 1.53005 * 109.46832 * 180.02562 * 8 7 5 10 10 H 1.08991 * 109.47209 * 64.99770 * 9 8 7 11 11 C 1.53004 * 109.46957 * 185.00130 * 9 8 7 12 12 N 1.46503 * 109.46671 * 304.99943 * 9 8 7 13 13 C 1.36934 * 119.99875 * 118.51488 * 12 9 8 14 14 H 1.07999 * 119.99992 * 213.17628 * 13 12 9 15 15 C 1.38811 * 120.00102 * 33.17257 * 13 12 9 16 16 N 1.31611 * 119.99980 * 12.31973 * 15 13 12 17 17 Si 1.86809 * 119.99951 * 192.31828 * 15 13 12 18 18 H 1.48496 * 109.46977 * 89.99999 * 17 15 13 19 19 H 1.48499 * 109.46913 * 210.00195 * 17 15 13 20 20 H 1.48499 * 109.46908 * 330.00069 * 17 15 13 21 21 C 1.46501 * 120.00372 * 298.50465 * 12 9 8 22 22 C 1.52998 * 109.46814 * 95.52498 * 21 12 9 23 23 C 1.50702 * 109.47002 * 295.25706 * 3 2 1 24 24 C 1.41379 * 128.00619 * 119.99651 * 23 3 2 25 25 C 1.50695 * 126.80609 * 359.97438 * 24 23 3 26 26 N 1.30182 * 106.39182 * 179.97438 * 24 23 3 27 27 O 1.20922 * 111.60465 * 359.97438 * 26 24 23 28 28 C 1.34036 * 111.56667 * 359.76735 * 27 26 24 29 29 C 1.50700 * 126.77416 * 180.28617 * 28 27 26 30 30 H 1.09009 * 109.46890 * 305.29703 * 1 2 3 31 31 H 1.09003 * 109.46932 * 65.28694 * 1 2 3 32 32 H 1.09000 * 109.47620 * 185.29066 * 1 2 3 33 33 H 1.08999 * 109.47160 * 239.99749 * 2 1 3 34 34 H 1.09001 * 109.46998 * 120.00247 * 2 1 3 35 35 H 0.96998 * 119.99874 * 354.89087 * 7 5 3 36 36 H 1.09002 * 109.47124 * 299.99730 * 8 7 5 37 37 H 1.08997 * 109.47074 * 60.00520 * 8 7 5 38 38 H 1.09006 * 109.46943 * 59.99710 * 11 9 8 39 39 H 1.08998 * 109.46958 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.47217 * 299.99785 * 11 9 8 41 41 H 0.97007 * 119.99899 * 180.02562 * 16 15 13 42 42 H 1.08998 * 109.47436 * 215.52763 * 21 12 9 43 43 H 1.09006 * 109.46771 * 335.53078 * 21 12 9 44 44 H 1.09004 * 109.47104 * 180.02562 * 22 21 12 45 45 H 1.08998 * 109.47335 * 300.00327 * 22 21 12 46 46 H 1.09006 * 109.46978 * 60.00706 * 22 21 12 47 47 H 1.09001 * 109.47111 * 89.99872 * 25 24 23 48 48 H 1.08993 * 109.47421 * 209.99769 * 25 24 23 49 49 H 1.09002 * 109.46789 * 330.00164 * 25 24 23 50 50 H 1.09000 * 109.47035 * 270.10178 * 29 28 27 51 51 H 1.08994 * 109.47175 * 30.10787 * 29 28 27 52 52 H 1.09001 * 109.47267 * 150.10838 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6090 1.9802 0.8445 5 6 3.5425 1.4439 0.1176 6 8 4.2167 1.9865 -0.7321 7 7 4.1369 0.8423 1.1670 8 6 5.5976 0.7457 1.2249 9 6 6.0103 0.0228 2.5087 10 1 5.6543 -1.0068 2.4765 11 6 7.5355 0.0315 2.6310 12 7 5.4238 0.7065 3.6641 13 6 4.5473 0.0425 4.4801 14 1 3.7387 0.5790 4.9542 15 6 4.6979 -1.3201 4.6980 16 7 5.8051 -1.9273 4.3271 17 14 3.3292 -2.2919 5.5176 18 1 2.4022 -2.8123 4.4807 19 1 3.9135 -3.4281 6.2744 20 1 2.5837 -1.4078 6.4491 21 6 5.7752 2.1004 3.9466 22 6 4.7191 3.0257 3.3387 23 6 1.6361 2.1181 -1.2850 24 6 0.8298 3.2680 -1.4478 25 6 0.1874 4.0823 -0.3546 26 7 0.7524 3.4840 -2.7292 27 8 1.3749 2.6599 -3.3581 28 6 1.9666 1.7682 -2.5511 29 6 2.8274 0.6043 -2.9699 30 1 -0.3633 0.5939 0.8388 31 1 -0.3633 0.4297 -0.9336 32 1 -0.3634 -1.0233 0.0948 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.5976 0.4733 1.8838 36 1 5.9593 0.1871 0.3615 37 1 6.0285 1.7468 1.2166 38 1 7.8915 1.0613 2.6632 39 1 7.8295 -0.4830 3.5459 40 1 7.9718 -0.4771 1.7714 41 1 5.9103 -2.8796 4.4790 42 1 5.8152 2.2537 5.0250 43 1 6.7489 2.3250 3.5112 44 1 4.9807 4.0629 3.5485 45 1 4.6790 2.8724 2.2603 46 1 3.7453 2.8011 3.7741 47 1 0.8697 4.8726 -0.0414 48 1 -0.7360 4.5259 -0.7268 49 1 -0.0361 3.4374 0.4953 50 1 2.2009 -0.2745 -3.1228 51 1 3.3428 0.8492 -3.8986 52 1 3.5612 0.3962 -2.1911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155851012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:36 Heat of formation + Delta-G solvation = 11.993861 kcal Electronic energy + Delta-G solvation = -31910.664395 eV Core-core repulsion = 27913.252369 eV Total energy + Delta-G solvation = -3997.412025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.88338 -40.96680 -38.68273 -37.03479 -35.27235 -34.98226 -33.73751 -33.45009 -32.51026 -29.97982 -29.74446 -29.52438 -28.26412 -26.52806 -25.73429 -23.74611 -23.33214 -22.56536 -21.45920 -20.96025 -20.33054 -18.80591 -18.62598 -18.13268 -17.75028 -17.00158 -16.54327 -16.42080 -15.99780 -15.57289 -15.30084 -14.86997 -14.71492 -14.52142 -14.28272 -14.26825 -13.98429 -13.95169 -13.82169 -13.69854 -13.63727 -13.43027 -13.31871 -13.15757 -12.97444 -12.83825 -12.73088 -12.68756 -12.52353 -12.35952 -12.30619 -12.00738 -11.81562 -11.74462 -11.68985 -11.30004 -11.15702 -10.89230 -10.61584 -10.37627 -10.01257 -9.80205 -8.46527 -7.75195 -5.28321 0.53265 1.21855 1.53895 1.59092 1.63922 1.73575 2.16916 2.49856 2.59539 3.22375 3.39809 3.53540 3.69640 3.70731 3.80578 4.01815 4.15372 4.28576 4.33218 4.42701 4.48956 4.50618 4.61245 4.62011 4.64929 4.65293 4.71879 4.75287 4.79023 4.84779 4.91226 4.93325 4.93511 4.97919 5.03293 5.07958 5.10296 5.16466 5.20591 5.26096 5.26718 5.35397 5.41235 5.57602 5.64188 5.78740 5.82465 5.93747 6.56378 6.79516 7.30075 7.31506 7.39252 7.98179 8.50014 9.27691 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.003825 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.702619 B = 7317.977663 C = 7857.241530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.020 4.020 4 H 0.118 0.882 5 C 0.513 3.487 6 O -0.578 6.578 7 N -0.695 5.695 8 C 0.117 3.883 9 C 0.177 3.823 10 H 0.084 0.916 11 C -0.134 4.134 12 N -0.590 5.590 13 C -0.255 4.255 14 H 0.062 0.938 15 C -0.030 4.030 16 N -0.917 5.917 17 Si 0.951 3.049 18 H -0.280 1.280 19 H -0.306 1.306 20 H -0.276 1.276 21 C 0.138 3.862 22 C -0.155 4.155 23 C -0.187 4.187 24 C 0.025 3.975 25 C -0.078 4.078 26 N -0.399 5.399 27 O 0.076 5.924 28 C -0.005 4.005 29 C -0.074 4.074 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.410 0.590 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.247 0.753 42 H 0.030 0.970 43 H 0.041 0.959 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.043 0.957 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.099 0.901 50 H 0.108 0.892 51 H 0.091 0.909 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 4.072 -9.180 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.041 4.041 4 H 0.136 0.864 5 C 0.300 3.700 6 O -0.459 6.459 7 N -0.345 5.345 8 C -0.009 4.009 9 C 0.070 3.930 10 H 0.101 0.899 11 C -0.193 4.193 12 N -0.312 5.312 13 C -0.386 4.386 14 H 0.080 0.920 15 C -0.227 4.227 16 N -0.562 5.562 17 Si 0.781 3.219 18 H -0.206 1.206 19 H -0.233 1.233 20 H -0.202 1.202 21 C 0.013 3.987 22 C -0.214 4.214 23 C -0.191 4.191 24 C -0.134 4.134 25 C -0.135 4.135 26 N -0.109 5.109 27 O 0.016 5.984 28 C -0.068 4.068 29 C -0.131 4.131 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.117 0.883 50 H 0.126 0.874 51 H 0.110 0.890 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.056 5.178 -10.498 14.800 hybrid contribution -0.092 -1.104 1.514 1.876 sum -9.148 4.074 -8.984 13.453 Atomic orbital electron populations 1.21693 0.93662 1.02630 1.01924 1.21598 0.97810 0.92263 1.03511 1.19587 0.91152 0.98624 0.94783 0.86379 1.20723 0.90527 0.77611 0.81160 1.90653 1.66750 1.46004 1.42464 1.45889 1.08003 1.57745 1.22866 1.21868 0.80261 0.99749 0.99032 1.20463 0.92071 0.96960 0.83482 0.89856 1.21864 0.97233 0.99403 1.00799 1.43999 1.51491 1.08496 1.27262 1.19268 1.04895 0.91292 1.23101 0.92007 1.25684 0.97761 0.99249 1.00051 1.70080 1.25290 1.09431 1.51398 0.85525 0.79704 0.78169 0.78480 1.20619 1.23340 1.20154 1.20825 0.95637 0.85132 0.97133 1.22248 1.00073 0.98474 1.00609 1.20327 1.04648 0.99075 0.95058 1.23863 0.99762 0.96706 0.93048 1.20323 1.00525 0.98853 0.93831 1.73779 1.16903 1.12664 1.07587 1.84718 1.49023 1.30017 1.34601 1.24532 0.97447 0.95268 0.89579 1.20521 0.97295 0.91493 1.03811 0.91651 0.93414 0.91365 0.90928 0.90540 0.75269 0.92828 0.93647 0.94250 0.93766 0.93213 0.94305 0.95159 0.94076 0.92996 0.93577 0.93743 0.89871 0.89613 0.88261 0.87380 0.89047 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.63 71.98 0.69 -1.82 16 2 C -0.11 -2.39 5.27 30.59 0.16 -2.23 16 3 C -0.02 -0.48 2.48 -12.29 -0.03 -0.51 16 4 H 0.12 2.58 7.34 -2.39 -0.02 2.56 16 5 C 0.51 15.76 6.13 87.66 0.54 16.30 16 6 O -0.58 -21.21 14.10 -3.03 -0.04 -21.25 16 7 N -0.70 -22.31 3.93 -463.06 -1.82 -24.14 16 8 C 0.12 4.13 4.35 86.38 0.38 4.50 16 9 C 0.18 7.14 1.93 44.99 0.09 7.23 16 10 H 0.08 3.88 5.76 -2.39 -0.01 3.87 16 11 C -0.13 -5.22 9.03 71.98 0.65 -4.57 16 12 N -0.59 -24.87 1.88 -678.02 -1.27 -26.14 16 13 C -0.26 -11.86 9.20 84.03 0.77 -11.08 16 14 H 0.06 2.87 7.86 -2.91 -0.02 2.85 16 15 C -0.03 -1.46 4.99 84.86 0.42 -1.04 16 16 N -0.92 -46.98 10.47 21.65 0.23 -46.75 16 17 Si 0.95 39.70 29.57 68.60 2.03 41.73 16 18 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.31 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 21 C 0.14 5.24 5.72 86.38 0.49 5.73 16 22 C -0.15 -5.08 9.90 71.98 0.71 -4.37 16 23 C -0.19 -4.90 3.59 -19.74 -0.07 -4.97 16 24 C 0.03 0.66 7.33 43.57 0.32 0.98 16 25 C -0.08 -1.49 10.26 71.23 0.73 -0.76 16 26 N -0.40 -11.93 12.07 -49.54 -0.60 -12.52 16 27 O 0.08 2.22 11.20 71.67 0.80 3.02 16 28 C 0.00 -0.13 6.85 25.04 0.17 0.04 16 29 C -0.07 -1.56 8.70 71.24 0.62 -0.94 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.05 0.89 7.55 -2.39 -0.02 0.87 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.47 6.37 -2.39 -0.02 1.46 16 34 H 0.08 1.69 7.39 -2.39 -0.02 1.67 16 35 H 0.41 13.54 7.17 -92.71 -0.66 12.88 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.68 6.99 -2.39 -0.02 1.66 16 38 H 0.04 1.42 6.61 -2.38 -0.02 1.40 16 39 H 0.04 1.99 7.63 -2.39 -0.02 1.97 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.25 12.63 8.31 -92.70 -0.77 11.86 16 42 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 43 H 0.04 1.51 6.36 -2.38 -0.02 1.49 16 44 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.05 1.57 5.14 -2.39 -0.01 1.56 16 46 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.10 1.50 7.55 -2.39 -0.02 1.48 16 50 H 0.11 1.68 7.96 -2.39 -0.02 1.66 16 51 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.08 2.06 5.66 -2.39 -0.01 2.04 16 Total: -1.00 -57.99 402.93 6.23 -51.76 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.26 Total: 31.80 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 6.65 Total: 2.50 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -3.47 Total: -109.56 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.76 Total: -18.23 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -57.99 6.23 -51.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155851012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.756 kcal (2) G-P(sol) polarization free energy of solvation -57.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds