Wall clock time and date at job start Tue Mar 31 2020 20:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47113 * 2 1 4 4 H 1.09001 * 109.47160 * 306.15150 * 3 2 1 5 5 C 1.50696 * 109.47236 * 186.15523 * 3 2 1 6 6 O 1.21286 * 120.00073 * 240.00037 * 5 3 2 7 7 N 1.34776 * 120.00201 * 59.99607 * 5 3 2 8 8 C 1.46506 * 120.00045 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.46930 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.47670 * 64.99457 * 9 8 7 11 11 C 1.52999 * 109.47072 * 184.99823 * 9 8 7 12 12 N 1.46506 * 109.47045 * 304.99201 * 9 8 7 13 13 C 1.36934 * 120.00031 * 122.00172 * 12 9 8 14 14 H 1.07999 * 120.00590 * 214.28297 * 13 12 9 15 15 C 1.38811 * 119.99854 * 34.28764 * 13 12 9 16 16 N 1.31623 * 120.00207 * 7.50434 * 15 13 12 17 17 Si 1.86808 * 120.00280 * 187.50945 * 15 13 12 18 18 H 1.48502 * 109.46621 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47372 * 119.99779 * 17 15 13 20 20 H 1.48497 * 109.46671 * 239.99783 * 17 15 13 21 21 C 1.46501 * 120.00056 * 302.01191 * 12 9 8 22 22 C 1.52998 * 109.47427 * 95.41528 * 21 12 9 23 23 C 1.50701 * 109.47364 * 66.15207 * 3 2 1 24 24 C 1.41377 * 128.00418 * 63.39830 * 23 3 2 25 25 C 1.50699 * 126.80392 * 359.76196 * 24 23 3 26 26 N 1.30178 * 106.39537 * 179.73544 * 24 23 3 27 27 O 1.20921 * 111.60283 * 0.02562 * 26 24 23 28 28 C 1.34040 * 111.57130 * 359.97438 * 27 26 24 29 29 C 1.50694 * 126.77945 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47291 * 300.00836 * 1 2 3 31 31 H 1.09007 * 109.46818 * 60.00086 * 1 2 3 32 32 H 1.08997 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47143 * 239.99547 * 2 1 3 34 34 H 1.09002 * 109.46633 * 119.99462 * 2 1 3 35 35 H 0.96997 * 120.00085 * 0.02562 * 7 5 3 36 36 H 1.09004 * 109.46674 * 299.99774 * 8 7 5 37 37 H 1.08992 * 109.47527 * 60.00104 * 8 7 5 38 38 H 1.08997 * 109.47088 * 179.97438 * 11 9 8 39 39 H 1.08999 * 109.46899 * 299.99714 * 11 9 8 40 40 H 1.09001 * 109.47381 * 59.99741 * 11 9 8 41 41 H 0.97002 * 120.00608 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.47001 * 215.41838 * 21 12 9 43 43 H 1.09000 * 109.46615 * 335.41538 * 21 12 9 44 44 H 1.08995 * 109.47283 * 300.00137 * 22 21 12 45 45 H 1.09006 * 109.46991 * 59.99714 * 22 21 12 46 46 H 1.08995 * 109.47066 * 179.97438 * 22 21 12 47 47 H 1.08997 * 109.47560 * 95.15650 * 25 24 23 48 48 H 1.09001 * 109.47228 * 215.15674 * 25 24 23 49 49 H 1.08997 * 109.47249 * 335.15131 * 25 24 23 50 50 H 1.08995 * 109.46982 * 274.84575 * 29 28 27 51 51 H 1.09003 * 109.47422 * 34.84917 * 29 28 27 52 52 H 1.09003 * 109.47147 * 154.84817 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5895 1.9871 -0.8298 5 6 3.5392 1.4452 -0.1523 6 8 4.2355 1.9387 0.7095 7 7 4.1065 0.8993 -1.2463 8 6 5.5641 0.9015 -1.3941 9 6 5.9438 0.2269 -2.7137 10 1 5.5686 0.8211 -3.5468 11 6 7.4668 0.1173 -2.8107 12 7 5.3536 -1.1131 -2.7648 13 6 4.5077 -1.4501 -3.7874 14 1 3.6799 -2.1194 -3.6053 15 6 4.7141 -0.9316 -5.0584 16 7 5.8019 -0.2371 -5.3172 17 14 3.4481 -1.2191 -6.4016 18 1 2.3246 -2.0243 -5.8586 19 1 2.9333 0.0873 -6.8846 20 1 4.0803 -1.9496 -7.5294 21 6 5.6683 -2.0923 -1.7216 22 6 4.5791 -2.0612 -0.6475 23 6 1.6659 2.1076 1.2995 24 6 2.0885 1.7671 2.6049 25 6 3.0166 0.6437 2.9892 26 7 1.5177 2.6167 3.4093 27 8 0.8267 3.4051 2.8067 28 6 0.8513 3.1735 1.4866 29 6 0.1178 3.9466 0.4212 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.5497 0.5049 -1.9357 36 1 5.9276 1.9291 -1.3939 37 1 6.0143 0.3566 -0.5644 38 1 7.7373 -0.3637 -3.7506 39 1 7.9059 1.1141 -2.7727 40 1 7.8421 -0.4771 -1.9776 41 1 5.9464 0.1249 -6.2054 42 1 5.7168 -3.0885 -2.1611 43 1 6.6300 -1.8468 -1.2710 44 1 4.5306 -1.0650 -0.2079 45 1 3.6174 -2.3067 -1.0981 46 1 4.8131 -2.7901 0.1284 47 1 4.0337 1.0259 3.0754 48 1 2.7036 0.2248 3.9456 49 1 2.9837 -0.1324 2.2246 50 1 -0.8946 3.5556 0.3206 51 1 0.0747 4.9993 0.7007 52 1 0.6429 3.8441 -0.5286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155851013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:40 Heat of formation + Delta-G solvation = 27.160257 kcal Electronic energy + Delta-G solvation = -32040.738124 eV Core-core repulsion = 28043.983763 eV Total energy + Delta-G solvation = -3996.754361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.81741 -39.65340 -37.10789 -35.90560 -34.01239 -33.56444 -32.78822 -31.91504 -30.99877 -28.90446 -28.46151 -28.16779 -27.22947 -25.11165 -23.98133 -22.79400 -21.74855 -21.47563 -20.10099 -19.63623 -19.16662 -17.64029 -17.14822 -16.77911 -16.42816 -15.71022 -15.19070 -14.81641 -14.65050 -14.28984 -13.98761 -13.75586 -13.46154 -13.43665 -13.30428 -13.03543 -12.93179 -12.74303 -12.69145 -12.43968 -12.26299 -12.23400 -12.07834 -11.87924 -11.81805 -11.48181 -11.26803 -11.09114 -10.98622 -10.94650 -10.87133 -10.67871 -10.56300 -10.32060 -10.09965 -9.69224 -9.63283 -9.49824 -9.40865 -8.98107 -8.56532 -8.38267 -6.67343 -5.90637 -3.44660 1.53041 2.33921 3.02671 3.16353 3.26322 3.35826 3.36672 3.75418 4.30058 4.36859 4.50704 4.70817 4.79001 4.98794 5.10034 5.18172 5.25443 5.26922 5.31267 5.35386 5.40752 5.47168 5.63251 5.68107 5.71030 5.79725 5.85249 5.92241 5.97349 5.99331 6.02594 6.12674 6.16501 6.18682 6.24739 6.35884 6.39012 6.48281 6.55040 6.62734 6.68996 6.82478 6.88201 7.07041 7.12374 7.52555 7.61628 7.72169 8.13663 8.40817 8.41070 8.72346 9.14112 9.73534 10.30095 11.14923 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.003789 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.517777 B = 7387.934641 C = 8050.744716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.030 4.030 4 H 0.104 0.896 5 C 0.509 3.491 6 O -0.548 6.548 7 N -0.698 5.698 8 C 0.103 3.897 9 C 0.175 3.825 10 H 0.109 0.891 11 C -0.141 4.141 12 N -0.584 5.584 13 C -0.258 4.258 14 H 0.064 0.936 15 C 0.011 3.989 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.141 3.859 22 C -0.173 4.173 23 C -0.166 4.166 24 C 0.056 3.944 25 C -0.072 4.072 26 N -0.377 5.377 27 O 0.090 5.910 28 C -0.037 4.037 29 C -0.073 4.073 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.410 0.590 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.254 0.746 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.054 0.946 45 H 0.046 0.954 46 H 0.031 0.969 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 3.569 8.945 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.052 4.052 4 H 0.122 0.878 5 C 0.294 3.706 6 O -0.427 6.427 7 N -0.349 5.349 8 C -0.023 4.023 9 C 0.067 3.933 10 H 0.127 0.873 11 C -0.200 4.200 12 N -0.305 5.305 13 C -0.387 4.387 14 H 0.082 0.918 15 C -0.189 4.189 16 N -0.540 5.540 17 Si 0.729 3.271 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.014 3.986 22 C -0.232 4.232 23 C -0.170 4.170 24 C -0.103 4.103 25 C -0.129 4.129 26 N -0.085 5.085 27 O 0.028 5.972 28 C -0.100 4.100 29 C -0.130 4.130 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.726 4.164 10.690 14.414 hybrid contribution -0.616 -0.569 -1.868 2.048 sum -9.343 3.595 8.822 13.343 Atomic orbital electron populations 1.21747 0.95070 1.01929 1.01746 1.21627 0.96613 0.93450 1.03769 1.19660 0.93952 0.97776 0.93846 0.87814 1.20259 0.89412 0.78615 0.82337 1.90662 1.64156 1.46283 1.41556 1.45972 1.08947 1.58208 1.21763 1.22166 0.79237 0.99735 1.01143 1.20594 0.92251 0.87064 0.93365 0.87348 1.22006 0.97307 0.98999 1.01713 1.43882 1.53686 1.07358 1.25610 1.19149 1.04985 1.27585 0.87027 0.91818 1.25240 0.96348 1.00241 0.97035 1.69917 1.25007 1.38366 1.20670 0.86281 0.80961 0.77547 0.82299 1.20263 1.21648 1.21678 1.20739 0.94585 0.93377 0.89860 1.22509 1.01104 1.00590 0.99019 1.20271 1.02178 0.99084 0.95474 1.23225 0.99109 0.98457 0.89487 1.20210 0.97629 0.93594 1.01515 1.73782 1.09608 1.04066 1.21049 1.84760 1.51736 1.44057 1.16682 1.24101 1.01678 0.98175 0.86079 1.20320 0.99606 0.99454 0.93627 0.93009 0.92382 0.92315 0.89827 0.91086 0.75313 0.93130 0.93009 0.90409 0.95027 0.95527 0.93561 0.94225 0.94607 0.92682 0.93445 0.94955 0.89511 0.91413 0.90391 0.89572 0.89919 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.74 37.16 0.36 -1.10 16 2 C -0.12 -1.37 5.31 -26.73 -0.14 -1.51 16 3 C -0.03 -0.39 2.45 -92.93 -0.23 -0.62 16 4 H 0.10 1.16 6.99 -51.93 -0.36 0.79 16 5 C 0.51 8.20 6.54 -10.99 -0.07 8.12 16 6 O -0.55 -10.48 14.07 5.55 0.08 -10.41 16 7 N -0.70 -11.61 3.67 -60.29 -0.22 -11.83 16 8 C 0.10 1.88 4.32 -4.04 -0.02 1.86 16 9 C 0.17 3.58 1.90 -67.93 -0.13 3.45 16 10 H 0.11 2.55 5.88 -51.93 -0.31 2.25 16 11 C -0.14 -2.83 9.02 37.16 0.34 -2.49 16 12 N -0.58 -12.38 1.84 -165.66 -0.31 -12.69 16 13 C -0.26 -6.05 9.42 -15.06 -0.14 -6.19 16 14 H 0.06 1.50 7.84 -52.49 -0.41 1.09 16 15 C 0.01 0.26 5.09 -17.43 -0.09 0.17 16 16 N -0.90 -22.82 9.97 55.49 0.55 -22.27 16 17 Si 0.90 19.57 29.56 -169.99 -5.03 14.55 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.14 2.69 5.62 -4.04 -0.02 2.67 16 22 C -0.17 -2.86 9.82 37.16 0.36 -2.50 16 23 C -0.17 -2.28 3.56 -104.42 -0.37 -2.65 16 24 C 0.06 0.85 6.65 -82.10 -0.55 0.31 16 25 C -0.07 -0.99 9.06 36.01 0.33 -0.67 16 26 N -0.38 -5.97 12.07 33.42 0.40 -5.56 16 27 O 0.09 1.29 11.20 17.18 0.19 1.48 16 28 C -0.04 -0.45 7.49 -35.30 -0.26 -0.72 16 29 C -0.07 -0.58 10.26 36.00 0.37 -0.21 16 30 H 0.05 0.53 7.42 -51.93 -0.39 0.14 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.03 7.40 -51.93 -0.38 0.65 16 34 H 0.07 0.87 5.68 -51.93 -0.29 0.57 16 35 H 0.41 6.93 7.35 -40.82 -0.30 6.63 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.98 7.08 -51.93 -0.37 0.61 16 38 H 0.08 1.78 7.28 -51.93 -0.38 1.40 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.03 0.49 6.75 -51.93 -0.35 0.14 16 41 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 42 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.04 0.67 6.54 -51.93 -0.34 0.33 16 44 H 0.05 0.93 4.77 -51.93 -0.25 0.68 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 1.30 7.74 -51.93 -0.40 0.90 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.08 1.03 5.73 -51.93 -0.30 0.73 16 50 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.09 0.66 7.15 -51.93 -0.37 0.29 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -27.73 401.22 -7.10 -34.83 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.56 Total: 7.92 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.27 Total: -2.07 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.43 Total: -52.36 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.27 Total: -8.93 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -27.73 -7.10 -34.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155851013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.995 kcal (2) G-P(sol) polarization free energy of solvation -27.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds