Wall clock time and date at job start Tue Mar 31 2020 20:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47113 * 2 1 4 4 H 1.09001 * 109.47160 * 306.15150 * 3 2 1 5 5 C 1.50696 * 109.47236 * 186.15523 * 3 2 1 6 6 O 1.21286 * 120.00073 * 240.00037 * 5 3 2 7 7 N 1.34776 * 120.00201 * 59.99607 * 5 3 2 8 8 C 1.46506 * 120.00045 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.46930 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.47670 * 64.99457 * 9 8 7 11 11 C 1.52999 * 109.47072 * 184.99823 * 9 8 7 12 12 N 1.46506 * 109.47045 * 304.99201 * 9 8 7 13 13 C 1.36934 * 120.00031 * 122.00172 * 12 9 8 14 14 H 1.07999 * 120.00590 * 214.28297 * 13 12 9 15 15 C 1.38811 * 119.99854 * 34.28764 * 13 12 9 16 16 N 1.31623 * 120.00207 * 7.50434 * 15 13 12 17 17 Si 1.86808 * 120.00280 * 187.50945 * 15 13 12 18 18 H 1.48502 * 109.46621 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47372 * 119.99779 * 17 15 13 20 20 H 1.48497 * 109.46671 * 239.99783 * 17 15 13 21 21 C 1.46501 * 120.00056 * 302.01191 * 12 9 8 22 22 C 1.52998 * 109.47427 * 95.41528 * 21 12 9 23 23 C 1.50701 * 109.47364 * 66.15207 * 3 2 1 24 24 C 1.41377 * 128.00418 * 63.39830 * 23 3 2 25 25 C 1.50699 * 126.80392 * 359.76196 * 24 23 3 26 26 N 1.30178 * 106.39537 * 179.73544 * 24 23 3 27 27 O 1.20921 * 111.60283 * 0.02562 * 26 24 23 28 28 C 1.34040 * 111.57130 * 359.97438 * 27 26 24 29 29 C 1.50694 * 126.77945 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47291 * 300.00836 * 1 2 3 31 31 H 1.09007 * 109.46818 * 60.00086 * 1 2 3 32 32 H 1.08997 * 109.47391 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47143 * 239.99547 * 2 1 3 34 34 H 1.09002 * 109.46633 * 119.99462 * 2 1 3 35 35 H 0.96997 * 120.00085 * 0.02562 * 7 5 3 36 36 H 1.09004 * 109.46674 * 299.99774 * 8 7 5 37 37 H 1.08992 * 109.47527 * 60.00104 * 8 7 5 38 38 H 1.08997 * 109.47088 * 179.97438 * 11 9 8 39 39 H 1.08999 * 109.46899 * 299.99714 * 11 9 8 40 40 H 1.09001 * 109.47381 * 59.99741 * 11 9 8 41 41 H 0.97002 * 120.00608 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.47001 * 215.41838 * 21 12 9 43 43 H 1.09000 * 109.46615 * 335.41538 * 21 12 9 44 44 H 1.08995 * 109.47283 * 300.00137 * 22 21 12 45 45 H 1.09006 * 109.46991 * 59.99714 * 22 21 12 46 46 H 1.08995 * 109.47066 * 179.97438 * 22 21 12 47 47 H 1.08997 * 109.47560 * 95.15650 * 25 24 23 48 48 H 1.09001 * 109.47228 * 215.15674 * 25 24 23 49 49 H 1.08997 * 109.47249 * 335.15131 * 25 24 23 50 50 H 1.08995 * 109.46982 * 274.84575 * 29 28 27 51 51 H 1.09003 * 109.47422 * 34.84917 * 29 28 27 52 52 H 1.09003 * 109.47147 * 154.84817 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5895 1.9871 -0.8298 5 6 3.5392 1.4452 -0.1523 6 8 4.2355 1.9387 0.7095 7 7 4.1065 0.8993 -1.2463 8 6 5.5641 0.9015 -1.3941 9 6 5.9438 0.2269 -2.7137 10 1 5.5686 0.8211 -3.5468 11 6 7.4668 0.1173 -2.8107 12 7 5.3536 -1.1131 -2.7648 13 6 4.5077 -1.4501 -3.7874 14 1 3.6799 -2.1194 -3.6053 15 6 4.7141 -0.9316 -5.0584 16 7 5.8019 -0.2371 -5.3172 17 14 3.4481 -1.2191 -6.4016 18 1 2.3246 -2.0243 -5.8586 19 1 2.9333 0.0873 -6.8846 20 1 4.0803 -1.9496 -7.5294 21 6 5.6683 -2.0923 -1.7216 22 6 4.5791 -2.0612 -0.6475 23 6 1.6659 2.1076 1.2995 24 6 2.0885 1.7671 2.6049 25 6 3.0166 0.6437 2.9892 26 7 1.5177 2.6167 3.4093 27 8 0.8267 3.4051 2.8067 28 6 0.8513 3.1735 1.4866 29 6 0.1178 3.9466 0.4212 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.5497 0.5049 -1.9357 36 1 5.9276 1.9291 -1.3939 37 1 6.0143 0.3566 -0.5644 38 1 7.7373 -0.3637 -3.7506 39 1 7.9059 1.1141 -2.7727 40 1 7.8421 -0.4771 -1.9776 41 1 5.9464 0.1249 -6.2054 42 1 5.7168 -3.0885 -2.1611 43 1 6.6300 -1.8468 -1.2710 44 1 4.5306 -1.0650 -0.2079 45 1 3.6174 -2.3067 -1.0981 46 1 4.8131 -2.7901 0.1284 47 1 4.0337 1.0259 3.0754 48 1 2.7036 0.2248 3.9456 49 1 2.9837 -0.1324 2.2246 50 1 -0.8946 3.5556 0.3206 51 1 0.0747 4.9993 0.7007 52 1 0.6429 3.8441 -0.5286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155851013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:39 Heat of formation + Delta-G solvation = 13.762856 kcal Electronic energy + Delta-G solvation = -32041.319079 eV Core-core repulsion = 28043.983763 eV Total energy + Delta-G solvation = -3997.335316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.88765 -40.95742 -38.66139 -37.04279 -35.30474 -34.76036 -33.77293 -33.60881 -32.51524 -30.01465 -29.74776 -29.44332 -28.19230 -26.51645 -25.72571 -23.81791 -23.24825 -22.60903 -21.10566 -21.01630 -20.66994 -18.82030 -18.63400 -18.09769 -17.55994 -17.05343 -16.53617 -16.41425 -15.98894 -15.48490 -15.36261 -15.05505 -14.71716 -14.36718 -14.26387 -14.18241 -14.09389 -13.90923 -13.82297 -13.72800 -13.60489 -13.40596 -13.22933 -13.12895 -13.02780 -12.83131 -12.76549 -12.64102 -12.50413 -12.30002 -12.17115 -11.97866 -11.93304 -11.78544 -11.52837 -11.27039 -11.15785 -10.82457 -10.64529 -10.38558 -10.01117 -9.79902 -8.43130 -7.74561 -5.29397 0.54408 1.24455 1.52665 1.58818 1.64815 1.75762 2.24023 2.48288 2.59127 3.24862 3.41910 3.58096 3.63164 3.72839 3.83406 4.03090 4.15457 4.25732 4.33935 4.42869 4.49634 4.52961 4.59439 4.63924 4.66611 4.72974 4.74619 4.77881 4.81714 4.86206 4.86886 4.95223 4.97887 5.00329 5.04654 5.08306 5.13516 5.20153 5.25962 5.28206 5.29761 5.38538 5.44763 5.59703 5.66768 5.79881 5.83165 5.96904 6.57852 6.79827 7.31566 7.37045 7.41160 7.98801 8.50687 9.28645 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.003789 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.517777 B = 7387.934641 C = 8050.744716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.020 4.020 4 H 0.127 0.873 5 C 0.511 3.489 6 O -0.579 6.579 7 N -0.695 5.695 8 C 0.118 3.882 9 C 0.182 3.818 10 H 0.080 0.920 11 C -0.133 4.133 12 N -0.591 5.591 13 C -0.252 4.252 14 H 0.065 0.935 15 C -0.033 4.033 16 N -0.920 5.920 17 Si 0.954 3.046 18 H -0.267 1.267 19 H -0.293 1.293 20 H -0.304 1.304 21 C 0.139 3.861 22 C -0.157 4.157 23 C -0.185 4.185 24 C 0.040 3.960 25 C -0.068 4.068 26 N -0.404 5.404 27 O 0.084 5.916 28 C -0.023 4.023 29 C -0.075 4.075 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.411 0.589 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.246 0.754 42 H 0.030 0.970 43 H 0.038 0.962 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.112 0.888 51 H 0.097 0.903 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 3.623 9.116 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.042 4.042 4 H 0.144 0.856 5 C 0.297 3.703 6 O -0.459 6.459 7 N -0.346 5.346 8 C -0.008 4.008 9 C 0.075 3.925 10 H 0.098 0.902 11 C -0.192 4.192 12 N -0.313 5.313 13 C -0.382 4.382 14 H 0.083 0.917 15 C -0.230 4.230 16 N -0.565 5.565 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.220 1.220 20 H -0.232 1.232 21 C 0.014 3.986 22 C -0.217 4.217 23 C -0.190 4.190 24 C -0.118 4.118 25 C -0.125 4.125 26 N -0.114 5.114 27 O 0.022 5.978 28 C -0.087 4.087 29 C -0.132 4.132 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.130 0.870 51 H 0.116 0.884 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.801 4.207 10.881 15.898 hybrid contribution 0.049 -0.583 -1.888 1.977 sum -10.752 3.624 8.993 14.478 Atomic orbital electron populations 1.21703 0.93368 1.02561 1.02260 1.21592 0.98011 0.92332 1.03076 1.19635 0.91256 0.98925 0.94337 0.85550 1.20797 0.90793 0.77385 0.81279 1.90657 1.65291 1.47495 1.42457 1.45900 1.08100 1.58439 1.22115 1.21826 0.80489 0.99029 0.99466 1.20398 0.92183 0.86605 0.93360 0.90165 1.21879 0.97349 0.99599 1.00366 1.43983 1.53541 1.08050 1.25724 1.19325 1.04949 1.26569 0.87384 0.91710 1.25772 0.97703 1.00826 0.98678 1.70070 1.26423 1.39608 1.20383 0.85421 0.79461 0.76971 0.79785 1.19102 1.22010 1.23235 1.20816 0.95704 0.92269 0.89847 1.22312 0.99924 1.01003 0.98445 1.20377 1.03316 1.00147 0.95134 1.23525 0.99289 0.98661 0.90362 1.20171 0.96505 0.93465 1.02390 1.73766 1.10708 1.04881 1.21997 1.84723 1.51527 1.43800 1.17706 1.24861 1.00553 0.97390 0.85907 1.20600 1.00436 0.99869 0.92273 0.93337 0.90945 0.91691 0.90372 0.91865 0.75256 0.93485 0.93401 0.93437 0.93743 0.94504 0.94402 0.95197 0.94382 0.92992 0.93500 0.93044 0.91232 0.90121 0.90021 0.87010 0.88439 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.74 71.98 0.70 -1.70 16 2 C -0.11 -2.39 5.31 30.59 0.16 -2.23 16 3 C -0.02 -0.47 2.45 -12.29 -0.03 -0.50 16 4 H 0.13 2.42 6.99 -2.39 -0.02 2.40 16 5 C 0.51 15.85 6.54 87.66 0.57 16.42 16 6 O -0.58 -21.84 14.07 -3.05 -0.04 -21.88 16 7 N -0.70 -22.42 3.67 -463.05 -1.70 -24.12 16 8 C 0.12 4.26 4.32 86.38 0.37 4.63 16 9 C 0.18 7.44 1.90 44.99 0.09 7.53 16 10 H 0.08 3.82 5.88 -2.39 -0.01 3.81 16 11 C -0.13 -5.33 9.02 71.98 0.65 -4.68 16 12 N -0.59 -24.78 1.84 -678.04 -1.25 -26.03 16 13 C -0.25 -11.65 9.42 84.03 0.79 -10.86 16 14 H 0.07 2.96 7.84 -2.91 -0.02 2.94 16 15 C -0.03 -1.60 5.09 84.86 0.43 -1.17 16 16 N -0.92 -47.45 9.97 21.65 0.22 -47.24 16 17 Si 0.95 40.02 29.56 68.60 2.03 42.04 16 18 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 21 C 0.14 5.18 5.62 86.38 0.49 5.67 16 22 C -0.16 -4.94 9.82 71.98 0.71 -4.23 16 23 C -0.19 -4.78 3.56 -19.73 -0.07 -4.85 16 24 C 0.04 1.19 6.65 43.58 0.29 1.48 16 25 C -0.07 -1.86 9.06 71.24 0.65 -1.21 16 26 N -0.40 -12.58 12.07 -49.56 -0.60 -13.18 16 27 O 0.08 2.29 11.20 71.63 0.80 3.09 16 28 C -0.02 -0.53 7.49 25.04 0.19 -0.34 16 29 C -0.07 -0.92 10.26 71.23 0.73 -0.19 16 30 H 0.05 0.86 7.42 -2.39 -0.02 0.84 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.76 7.40 -2.39 -0.02 1.74 16 34 H 0.06 1.44 5.68 -2.39 -0.01 1.43 16 35 H 0.41 13.36 7.35 -92.71 -0.68 12.68 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.77 7.08 -2.39 -0.02 1.76 16 38 H 0.05 2.20 7.28 -2.39 -0.02 2.18 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 1.36 6.75 -2.39 -0.02 1.35 16 41 H 0.25 12.67 8.31 -92.71 -0.77 11.90 16 42 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 43 H 0.04 1.39 6.54 -2.39 -0.02 1.37 16 44 H 0.05 1.66 4.77 -2.39 -0.01 1.65 16 45 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.07 2.12 7.74 -2.39 -0.02 2.10 16 48 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.08 2.11 5.73 -2.39 -0.01 2.09 16 50 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 51 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.10 1.09 7.15 -2.39 -0.02 1.07 16 Total: -1.00 -59.92 401.22 6.42 -53.50 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.25 Total: 30.06 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.71 Total: 3.76 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -3.33 Total: -110.57 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.76 Total: -18.80 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Total: -59.92 6.42 -53.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155851013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.262 kcal (2) G-P(sol) polarization free energy of solvation -59.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds