Wall clock time and date at job start Tue Mar 31 2020 20:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.52993 * 109.47345 * 65.00157 * 3 2 1 6 6 C 1.50703 * 109.46801 * 184.99876 * 3 2 1 7 7 O 1.21280 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34776 * 119.99815 * 179.97438 * 6 3 2 9 9 C 1.46497 * 119.99939 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.47343 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47218 * 179.97438 * 10 9 8 12 12 C 1.29826 * 118.55105 * 95.00300 * 11 10 9 13 13 C 1.50136 * 123.28155 * 180.37177 * 12 11 10 14 14 N 1.46845 * 110.27810 * 342.94875 * 13 12 11 15 15 C 1.46896 * 111.00505 * 174.31322 * 14 13 12 16 16 C 1.50694 * 109.47128 * 293.95738 * 15 14 13 17 17 O 1.21293 * 120.00366 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00038 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99928 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00083 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00426 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99691 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47177 * 90.00067 * 23 21 19 25 25 H 1.48503 * 109.46802 * 210.00303 * 23 21 19 26 26 H 1.48499 * 109.47058 * 330.00060 * 23 21 19 27 27 C 1.47243 * 110.20477 * 50.92387 * 14 13 12 28 28 C 1.50306 * 118.55200 * 274.73197 * 11 10 9 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 34 34 H 1.08993 * 109.47639 * 59.99724 * 5 3 2 35 35 H 1.09004 * 109.47135 * 179.97438 * 5 3 2 36 36 H 1.09002 * 109.47179 * 299.99584 * 5 3 2 37 37 H 0.96998 * 120.00301 * 0.02562 * 8 6 3 38 38 H 1.09003 * 109.47209 * 299.99513 * 9 8 6 39 39 H 1.09000 * 109.47689 * 59.99911 * 9 8 6 40 40 H 1.09000 * 109.46872 * 300.00418 * 10 9 8 41 41 H 1.09001 * 109.46455 * 59.99878 * 10 9 8 42 42 H 1.08000 * 118.35890 * 0.39348 * 12 11 10 43 43 H 1.08998 * 109.33643 * 103.19264 * 13 12 11 44 44 H 1.09001 * 109.33871 * 222.86365 * 13 12 11 45 45 H 1.09003 * 109.46965 * 53.95505 * 15 14 13 46 46 H 1.08998 * 109.47723 * 173.95050 * 15 14 13 47 47 H 0.97001 * 119.99875 * 359.97438 * 18 16 15 48 48 H 0.97004 * 120.00219 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.63430 * 50.89460 * 27 14 13 50 50 H 1.08998 * 109.63613 * 171.29477 * 27 14 13 51 51 H 1.08990 * 109.43631 * 283.58317 * 28 11 10 52 52 H 1.09002 * 109.43017 * 43.43665 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3951 -0.2046 8 7 4.2149 2.6118 -0.1458 9 6 5.6748 2.6135 -0.2667 10 6 6.1849 4.0560 -0.2679 11 6 7.6868 4.0578 -0.3916 12 6 8.2120 4.1900 -1.5715 13 6 9.6930 4.1979 -1.8179 14 7 10.4162 4.4458 -0.5642 15 6 11.8669 4.3235 -0.7601 16 6 12.2098 2.8949 -1.0953 17 8 11.3322 2.0605 -1.1639 18 7 13.4918 2.5443 -1.3191 19 6 13.8039 1.2445 -1.6236 20 1 13.0225 0.5014 -1.6838 21 6 15.1257 0.8829 -1.8537 22 7 15.4248 -0.3628 -2.1461 23 14 16.4773 2.1681 -1.7489 24 1 16.9961 2.2286 -0.3588 25 1 17.5804 1.8027 -2.6735 26 1 15.9299 3.4945 -2.1311 27 6 9.9460 3.5255 0.4847 28 6 8.5107 3.9126 0.8571 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0698 1.5876 2.1491 35 1 1.9990 3.1541 1.3074 36 1 0.5489 2.1253 1.3969 37 1 3.7326 3.4509 -0.0816 38 1 6.1098 2.0747 0.5751 39 1 5.9630 2.1260 -1.1980 40 1 5.7498 4.5945 -1.1099 41 1 5.8968 4.5439 0.6633 42 1 7.5505 4.3001 -2.4181 43 1 9.9963 3.2332 -2.2248 44 1 9.9357 4.9837 -2.5332 45 1 12.1792 4.9735 -1.5774 46 1 12.3830 4.6161 0.1543 47 1 14.1937 3.2116 -1.2646 48 1 16.3476 -0.6153 -2.3064 49 1 9.9682 2.5019 0.1107 50 1 10.5891 3.6093 1.3607 51 1 8.5155 4.8575 1.4003 52 1 8.0796 3.1349 1.4876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159325392.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:01 Heat of formation + Delta-G solvation = -66.745241 kcal Electronic energy + Delta-G solvation = -28927.604122 eV Core-core repulsion = 24926.777713 eV Total energy + Delta-G solvation = -4000.826409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.18540 -39.61214 -37.81705 -36.07600 -35.49326 -34.23757 -33.53450 -31.76336 -30.71757 -30.54018 -29.50758 -27.12387 -25.69963 -24.68320 -23.46291 -23.18072 -21.84771 -21.48936 -20.00558 -19.47616 -18.47727 -17.44269 -17.23098 -16.34499 -15.98105 -15.95504 -15.55342 -15.23421 -14.91319 -14.88030 -14.53146 -14.13643 -13.96236 -13.93106 -13.83279 -13.54349 -13.06723 -12.92790 -12.80680 -12.58697 -12.44436 -12.31923 -12.11485 -12.08398 -11.94451 -11.90698 -11.77236 -11.33263 -11.24665 -11.18754 -11.02850 -10.93200 -10.64615 -10.60101 -10.27552 -10.04427 -9.86941 -9.59355 -9.34232 -9.24657 -8.59624 -8.20639 -7.50640 -6.36363 -3.87691 2.31928 2.47278 2.99505 3.00592 3.03980 3.12455 3.63937 4.05898 4.30241 4.32295 4.40381 4.54415 4.63873 4.76400 4.86259 4.88562 4.95957 5.01293 5.11461 5.14265 5.17656 5.20475 5.39225 5.41695 5.46960 5.49189 5.56740 5.57654 5.66510 5.72616 5.76435 5.80255 5.86846 5.88900 5.89315 5.93178 6.01469 6.01824 6.07860 6.20898 6.26112 6.35110 6.60974 6.72798 7.06615 7.27530 7.33731 7.39157 7.52112 8.04835 8.10240 8.52556 8.89415 9.36934 9.75288 10.76386 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.001881 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.716068 B =14885.883333 C =15939.518718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.111 4.111 4 H 0.096 0.904 5 C -0.145 4.145 6 C 0.512 3.488 7 O -0.535 6.535 8 N -0.732 5.732 9 C 0.121 3.879 10 C -0.090 4.090 11 C -0.126 4.126 12 C -0.133 4.133 13 C 0.065 3.935 14 N -0.508 5.508 15 C 0.036 3.964 16 C 0.414 3.586 17 O -0.575 6.575 18 N -0.583 5.583 19 C -0.308 4.308 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.878 5.878 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.268 1.268 27 C 0.032 3.968 28 C -0.072 4.072 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.371 0.629 48 H 0.274 0.726 49 H 0.088 0.912 50 H 0.066 0.934 51 H 0.071 0.929 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.686 12.785 5.566 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.132 4.132 4 H 0.114 0.886 5 C -0.203 4.203 6 C 0.298 3.702 7 O -0.411 6.411 8 N -0.384 5.384 9 C -0.002 4.002 10 C -0.128 4.128 11 C -0.127 4.127 12 C -0.152 4.152 13 C -0.062 4.062 14 N -0.231 5.231 15 C -0.096 4.096 16 C 0.200 3.800 17 O -0.460 6.460 18 N -0.221 5.221 19 C -0.437 4.437 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.517 5.517 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.096 4.096 28 C -0.109 4.109 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.204 0.796 48 H 0.085 0.915 49 H 0.106 0.894 50 H 0.084 0.916 51 H 0.089 0.911 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.752 11.780 5.558 27.970 hybrid contribution 1.315 0.541 -0.307 1.455 sum -23.438 12.321 5.250 26.994 Atomic orbital electron populations 1.21842 0.95475 1.01976 1.01767 1.21353 0.95310 0.94151 1.03692 1.21363 0.91853 0.99545 1.00477 0.88606 1.21830 1.02359 1.00119 0.95977 1.20728 0.89986 0.83627 0.75888 1.90743 1.70315 1.31387 1.48655 1.46086 1.08130 1.08656 1.75516 1.21401 0.78777 0.97082 1.02918 1.20829 0.93749 0.95531 1.02665 1.20601 0.93460 1.03023 0.95622 1.22085 0.96228 1.00236 0.96630 1.21145 0.90677 1.02164 0.92197 1.62967 1.02181 1.50690 1.07241 1.22127 0.90065 0.94582 1.02827 1.21064 0.83326 0.90993 0.84657 1.90460 1.46363 1.52509 1.56632 1.42408 1.06890 1.10366 1.62437 1.19459 0.95010 0.84661 1.44566 0.86337 1.25084 0.97388 0.96369 0.97285 1.69626 1.19737 1.16266 1.46084 0.86660 0.82462 0.81211 0.79009 1.19555 1.20122 1.19396 1.22543 0.94315 0.98310 0.94440 1.20461 0.94407 1.01121 0.94937 0.92414 0.92476 0.92741 0.91042 0.91244 0.91976 0.92242 0.91151 0.76802 0.91169 0.91194 0.91106 0.90927 0.87724 0.90034 0.90788 0.89255 0.89052 0.79591 0.91530 0.89448 0.91593 0.91088 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.11 -0.86 4.75 -26.73 -0.13 -0.98 16 3 C -0.11 -0.79 2.72 -91.77 -0.25 -1.04 16 4 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 5 C -0.15 -0.76 8.84 37.15 0.33 -0.43 16 6 C 0.51 5.56 7.15 -10.98 -0.08 5.48 16 7 O -0.54 -8.46 15.92 5.56 0.09 -8.37 16 8 N -0.73 -6.44 5.45 -60.29 -0.33 -6.77 16 9 C 0.12 1.33 5.66 -4.04 -0.02 1.30 16 10 C -0.09 -0.83 5.38 -27.88 -0.15 -0.98 16 11 C -0.13 -1.58 5.15 -100.93 -0.52 -2.10 16 12 C -0.13 -1.82 9.50 -35.97 -0.34 -2.16 16 13 C 0.07 1.04 5.41 -5.28 -0.03 1.02 16 14 N -0.51 -8.19 4.93 -237.46 -1.17 -9.36 16 15 C 0.04 0.60 5.84 -4.98 -0.03 0.57 16 16 C 0.41 9.07 7.11 -10.99 -0.08 8.99 16 17 O -0.57 -14.57 11.22 5.55 0.06 -14.51 16 18 N -0.58 -13.65 5.09 -10.96 -0.06 -13.70 16 19 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 20 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 22 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 23 Si 0.88 19.23 27.74 -169.99 -4.71 14.52 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.33 6.52 56.52 0.37 -4.97 16 27 C 0.03 0.52 4.92 -3.51 -0.02 0.50 16 28 C -0.07 -0.94 6.04 -27.94 -0.17 -1.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.24 7.56 -51.93 -0.39 -0.16 16 36 H 0.07 0.28 6.57 -51.93 -0.34 -0.06 16 37 H 0.40 2.20 7.89 -40.82 -0.32 1.88 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 41 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 42 H 0.10 1.23 7.81 -52.49 -0.41 0.82 16 43 H 0.08 1.60 5.79 -51.93 -0.30 1.30 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.09 1.30 8.12 -51.93 -0.42 0.88 16 46 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.09 1.78 5.52 -51.93 -0.29 1.49 16 50 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 407.67 15.07 6.14 6.14 Total: -1.00 -34.03 407.67 -9.49 -43.52 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -8.92 Total: 12.54 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.37 Total: 0.80 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.78 Total: -54.65 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.15 Total: -22.87 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.03 -9.49 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159325392.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.230 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds