Wall clock time and date at job start Tue Mar 31 2020 20:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47189 * 2 1 4 4 H 1.09004 * 109.46701 * 55.00817 * 3 2 1 5 5 C 1.52998 * 109.47367 * 295.00922 * 3 2 1 6 6 C 1.50696 * 109.47195 * 175.00269 * 3 2 1 7 7 O 1.21280 * 120.00201 * 0.02562 * 6 3 2 8 8 N 1.34781 * 120.00062 * 180.02562 * 6 3 2 9 9 C 1.46502 * 119.99983 * 180.02562 * 8 6 3 10 10 C 1.52999 * 109.46845 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46858 * 180.02562 * 10 9 8 12 12 C 1.29823 * 118.55903 * 94.99580 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47425 * 90.00231 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00087 * 23 21 19 26 26 H 1.48505 * 109.47256 * 330.00093 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50313 * 118.54933 * 274.97842 * 11 10 9 29 29 H 1.08994 * 109.47295 * 59.99313 * 1 2 3 30 30 H 1.09002 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46548 * 299.99218 * 1 2 3 32 32 H 1.09004 * 109.46548 * 240.00782 * 2 1 3 33 33 H 1.08994 * 109.47295 * 120.00687 * 2 1 3 34 34 H 1.08989 * 109.47368 * 59.99759 * 5 3 2 35 35 H 1.09002 * 109.47263 * 180.02562 * 5 3 2 36 36 H 1.09006 * 109.46607 * 299.99570 * 5 3 2 37 37 H 0.96998 * 120.00007 * 0.02562 * 8 6 3 38 38 H 1.09004 * 109.46986 * 60.00106 * 9 8 6 39 39 H 1.08999 * 109.46852 * 300.00202 * 9 8 6 40 40 H 1.08995 * 109.47059 * 60.00112 * 10 9 8 41 41 H 1.09003 * 109.47163 * 299.99496 * 10 9 8 42 42 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 43 43 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 44 44 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 45 45 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 46 46 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 47 47 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 48 48 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 50 50 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 51 51 H 1.09000 * 109.42632 * 283.57557 * 28 11 10 52 52 H 1.08996 * 109.43207 * 43.42603 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6351 2.1267 -1.3072 6 6 3.5419 1.4443 0.1238 7 8 4.1451 0.3952 0.2036 8 7 4.2149 2.6119 0.1457 9 6 5.6750 2.6136 0.2655 10 6 6.1849 4.0561 0.2656 11 6 7.6870 4.0578 0.3882 12 6 8.3980 4.1252 -0.6959 13 6 9.8994 4.1257 -0.6979 14 7 10.4100 4.4477 0.6408 15 6 11.8726 4.3209 0.6910 16 6 12.4983 5.3687 -0.1931 17 8 11.7950 6.1451 -0.8045 18 7 13.8395 5.4438 -0.3036 19 6 14.4086 6.3934 -1.1123 20 1 13.7823 7.0842 -1.6573 21 6 15.7911 6.4671 -1.2307 22 7 16.5530 5.6262 -0.5679 23 14 16.5665 7.7614 -2.3320 24 1 16.8169 8.9955 -1.5449 25 1 17.8519 7.2481 -2.8699 26 1 15.6471 8.0697 -3.4567 27 6 9.7707 3.5867 1.6496 28 6 8.2959 3.9818 1.7603 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.5489 2.1254 -1.3967 35 1 1.9989 3.1542 -1.3074 36 1 2.0697 1.5876 -2.1491 37 1 3.7325 3.4510 0.0823 38 1 6.1093 2.0751 -0.5769 39 1 5.9637 2.1256 1.1964 40 1 5.7507 4.5949 1.1077 41 1 5.8962 4.5436 -0.6656 42 1 7.8837 4.1838 -1.6438 43 1 10.2593 4.8686 -1.4097 44 1 10.2602 3.1407 -0.9944 45 1 12.1635 3.3301 0.3419 46 1 12.2143 4.4596 1.7166 47 1 14.4019 4.8232 0.1857 48 1 17.5181 5.6779 -0.6503 49 1 9.8484 2.5435 1.3432 50 1 10.2605 3.7258 2.6133 51 1 8.2162 4.9541 2.2466 52 1 7.7644 3.2366 2.3521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159325393.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:04 Heat of formation + Delta-G solvation = -74.689417 kcal Electronic energy + Delta-G solvation = -28389.362764 eV Core-core repulsion = 24388.191869 eV Total energy + Delta-G solvation = -4001.170894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28650 -39.30613 -37.82022 -36.19778 -35.59439 -34.15251 -33.64018 -31.25825 -30.76948 -30.64610 -29.52685 -27.08354 -25.76358 -24.76352 -23.66759 -23.25010 -21.94137 -21.58684 -20.09590 -19.20222 -17.86779 -17.60626 -17.35065 -16.45796 -16.16865 -15.96499 -15.48436 -15.33550 -14.79944 -14.63346 -14.62042 -14.25025 -13.99916 -13.88391 -13.81018 -13.68844 -13.19014 -12.96518 -12.95232 -12.63784 -12.54393 -12.23816 -12.16298 -12.04404 -11.97924 -11.87836 -11.52717 -11.47290 -11.27018 -11.24267 -11.11179 -11.01387 -10.79487 -10.42371 -10.37990 -10.20302 -9.98666 -9.47515 -9.36473 -8.71198 -8.43791 -7.96224 -7.79377 -6.40331 -3.81070 2.24415 2.35569 2.90248 3.18686 3.27246 3.32879 3.91937 4.02665 4.23817 4.26901 4.32335 4.46431 4.66784 4.75053 4.77913 4.88041 4.93715 4.98031 5.04297 5.10575 5.14527 5.25307 5.28181 5.34412 5.37734 5.42275 5.45795 5.51275 5.58153 5.59828 5.65248 5.70475 5.76807 5.79586 5.82274 5.85290 5.92876 5.99183 6.01034 6.13196 6.17408 6.28001 6.40878 6.56358 7.03179 7.17072 7.38041 7.40504 7.56520 7.92747 8.08073 8.63629 9.19684 9.56241 10.08220 10.77460 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033870 B = 0.001535 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.499078 B =18239.888341 C =18565.220639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.111 4.111 4 H 0.096 0.904 5 C -0.146 4.146 6 C 0.514 3.486 7 O -0.539 6.539 8 N -0.731 5.731 9 C 0.123 3.877 10 C -0.091 4.091 11 C -0.132 4.132 12 C -0.129 4.129 13 C 0.075 3.925 14 N -0.509 5.509 15 C 0.044 3.956 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.049 3.951 28 C -0.072 4.072 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.037 0.963 45 H 0.047 0.953 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.033 0.967 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.200 -8.643 3.881 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.204 4.204 6 C 0.300 3.700 7 O -0.416 6.416 8 N -0.383 5.383 9 C 0.000 4.000 10 C -0.129 4.129 11 C -0.133 4.133 12 C -0.148 4.148 13 C -0.052 4.052 14 N -0.233 5.233 15 C -0.087 4.087 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.079 4.079 28 C -0.109 4.109 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.234 0.766 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.133 0.867 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.052 0.948 50 H 0.095 0.905 51 H 0.097 0.903 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.122 -8.404 3.628 29.575 hybrid contribution 0.921 -0.120 -0.396 1.010 sum -27.201 -8.525 3.233 28.689 Atomic orbital electron populations 1.21847 0.95429 1.01986 1.01851 1.21346 0.95368 0.94125 1.03579 1.21368 0.91776 0.99559 1.00578 0.88543 1.21837 1.02449 1.00187 0.95890 1.20729 0.90024 0.83556 0.75695 1.90715 1.70387 1.31444 1.49036 1.46099 1.08117 1.08767 1.75345 1.21384 0.78922 0.97167 1.02528 1.20829 0.93757 0.95396 1.02916 1.20575 0.93402 1.03795 0.95513 1.22192 0.95589 0.99337 0.97649 1.21202 0.91587 1.00235 0.92159 1.62047 1.04031 1.52767 1.04460 1.21909 0.87983 0.97775 1.01061 1.19745 0.83004 0.87801 0.86490 1.90476 1.61292 1.44611 1.49813 1.41868 1.04622 1.31638 1.41995 1.19701 0.90198 1.10871 1.22042 0.87923 1.25250 0.96182 0.98300 0.98183 1.69615 1.05474 1.36993 1.42274 0.85865 0.78320 0.80159 0.79983 1.20417 1.20967 1.19455 1.22219 0.94837 0.94473 0.96391 1.20406 0.94342 1.01950 0.94214 0.92418 0.92417 0.92706 0.91286 0.91118 0.91083 0.92161 0.91981 0.76613 0.91382 0.91345 0.90766 0.90886 0.87490 0.86728 0.94499 0.93454 0.89231 0.77494 0.91906 0.94830 0.90529 0.90272 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.67 37.16 0.36 -0.37 16 2 C -0.11 -0.73 4.75 -26.73 -0.13 -0.85 16 3 C -0.11 -0.68 2.72 -91.77 -0.25 -0.93 16 4 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 5 C -0.15 -0.67 8.85 37.16 0.33 -0.34 16 6 C 0.51 4.85 7.15 -10.99 -0.08 4.78 16 7 O -0.54 -7.48 15.92 5.56 0.09 -7.40 16 8 N -0.73 -5.55 5.45 -60.29 -0.33 -5.88 16 9 C 0.12 1.13 5.66 -4.04 -0.02 1.11 16 10 C -0.09 -0.78 5.38 -27.88 -0.15 -0.94 16 11 C -0.13 -1.55 5.15 -100.92 -0.52 -2.07 16 12 C -0.13 -1.76 9.50 -35.97 -0.34 -2.10 16 13 C 0.08 1.26 5.22 -5.28 -0.03 1.23 16 14 N -0.51 -8.67 4.46 -237.56 -1.06 -9.73 16 15 C 0.04 0.80 5.44 -4.98 -0.03 0.77 16 16 C 0.44 10.50 7.54 -10.99 -0.08 10.42 16 17 O -0.58 -15.51 13.88 5.55 0.08 -15.44 16 18 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 23 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 C 0.05 0.65 5.59 -3.59 -0.02 0.63 16 28 C -0.07 -0.83 6.04 -28.03 -0.17 -0.99 16 29 H 0.06 0.23 6.56 -51.93 -0.34 -0.11 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.58 7.95 -51.93 -0.41 0.16 16 34 H 0.07 0.24 6.56 -51.94 -0.34 -0.10 16 35 H 0.06 0.21 7.57 -51.93 -0.39 -0.18 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 1.91 7.89 -40.82 -0.32 1.58 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 41 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 42 H 0.11 1.30 7.81 -52.49 -0.41 0.89 16 43 H 0.11 2.30 5.98 -51.93 -0.31 1.99 16 44 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 45 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 46 H 0.09 1.46 7.94 -51.93 -0.41 1.05 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 50 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 51 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 52 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 415.75 15.07 6.27 6.27 Total: -1.00 -33.48 415.75 -9.76 -43.24 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -9.08 Total: 8.76 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.37 Total: 2.37 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.72 Total: -53.86 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.83 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.48 -9.76 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159325393.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.453 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds