Wall clock time and date at job start Tue Mar 31 2020 19:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46995 * 2 1 4 4 C 1.50704 * 109.46854 * 119.99631 * 2 1 3 5 5 O 1.21280 * 120.00361 * 346.58058 * 4 2 1 6 6 N 1.34781 * 119.99675 * 166.57201 * 4 2 1 7 7 C 1.46489 * 120.00137 * 4.21996 * 6 4 2 8 8 C 1.46502 * 119.99643 * 184.21661 * 6 4 2 9 9 C 1.50703 * 109.47086 * 270.00128 * 8 6 4 10 10 O 1.21278 * 119.99917 * 0.02562 * 9 8 6 11 11 N 1.34776 * 119.99949 * 180.02562 * 9 8 6 12 12 C 1.46501 * 119.99908 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47006 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47046 * 179.97438 * 13 12 11 15 15 C 1.29452 * 117.69029 * 95.00214 * 14 13 12 16 16 C 1.50324 * 123.64822 * 181.13826 * 15 14 13 17 17 N 1.47134 * 109.10261 * 348.54202 * 16 15 14 18 18 C 1.36939 * 121.53374 * 223.15656 * 17 16 15 19 19 H 1.07997 * 120.00224 * 156.25041 * 18 17 16 20 20 C 1.38818 * 119.99823 * 336.25328 * 18 17 16 21 21 N 1.31612 * 120.00031 * 342.13860 * 20 18 17 22 22 Si 1.86802 * 119.99687 * 162.14066 * 20 18 17 23 23 H 1.48506 * 109.47051 * 94.98684 * 22 20 18 24 24 H 1.48496 * 109.47222 * 214.98237 * 22 20 18 25 25 H 1.48503 * 109.47338 * 334.98863 * 22 20 18 26 26 C 1.47339 * 117.09075 * 43.37929 * 17 16 15 27 27 C 1.49965 * 117.69160 * 275.02085 * 14 13 12 28 28 H 1.08998 * 109.47617 * 300.00365 * 1 2 3 29 29 H 1.09005 * 109.46913 * 59.99984 * 1 2 3 30 30 H 1.09003 * 109.47091 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47617 * 239.99635 * 2 1 3 32 32 H 1.09005 * 109.47367 * 48.04452 * 3 2 1 33 33 H 1.09003 * 109.47129 * 168.03848 * 3 2 1 34 34 H 1.09000 * 109.47306 * 288.03996 * 3 2 1 35 35 H 1.09000 * 109.47353 * 268.75690 * 7 6 4 36 36 H 1.09001 * 109.47618 * 28.75983 * 7 6 4 37 37 H 1.09001 * 109.47569 * 148.75972 * 7 6 4 38 38 H 1.08998 * 109.47106 * 150.00612 * 8 6 4 39 39 H 1.08998 * 109.47283 * 30.00148 * 8 6 4 40 40 H 0.97004 * 119.99740 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.46831 * 59.99840 * 12 11 9 42 42 H 1.08998 * 109.47038 * 299.99695 * 12 11 9 43 43 H 1.09007 * 109.46968 * 60.00220 * 13 12 11 44 44 H 1.08998 * 109.47320 * 299.99947 * 13 12 11 45 45 H 1.07999 * 118.17652 * 0.86100 * 15 14 13 46 46 H 1.08996 * 109.52535 * 108.64636 * 16 15 14 47 47 H 1.09000 * 109.52695 * 228.83897 * 16 15 14 48 48 H 0.97000 * 119.99858 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.77876 * 178.39911 * 26 17 16 50 50 H 1.09000 * 109.77379 * 57.59075 * 26 17 16 51 51 H 1.08999 * 109.32063 * 281.28571 * 27 14 13 52 52 H 1.08997 * 109.31583 * 40.72029 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 1.2712 -0.9553 2.1425 6 7 3.3273 -1.0736 1.3175 7 6 4.2664 -0.6969 0.2582 8 6 3.7957 -1.8450 2.4716 9 6 4.2488 -0.9016 3.5560 10 8 4.1861 0.2970 3.3821 11 7 4.7236 -1.3900 4.7189 12 6 5.1636 -0.4729 5.7733 13 6 5.6529 -1.2785 6.9784 14 6 6.1060 -0.3352 8.0628 15 6 5.2541 -0.0284 8.9880 16 6 5.5551 0.9172 10.1171 17 7 7.0005 1.1912 10.1433 18 6 7.7035 1.2161 11.3182 19 1 8.7682 1.0350 11.3144 20 6 7.0476 1.4741 12.5142 21 7 5.8557 2.0321 12.5040 22 14 7.8569 1.0291 14.1380 23 1 8.5651 2.2166 14.6799 24 1 6.8187 0.5885 15.1040 25 1 8.8301 -0.0713 13.9209 26 6 7.6592 1.4431 8.8497 27 6 7.5119 0.1823 7.9937 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.5133 2.0141 0.7643 33 1 3.1089 1.4500 0.2130 34 1 1.8610 1.8912 -0.9771 35 1 4.3043 -1.4871 -0.4916 36 1 3.9351 0.2309 -0.2082 37 1 5.2587 -0.5542 0.6861 38 1 4.6293 -2.4794 2.1704 39 1 2.9830 -2.4667 2.8471 40 1 4.7734 -2.3487 4.8580 41 1 4.3296 0.1609 6.0747 42 1 5.9758 0.1495 5.3978 43 1 6.4868 -1.9127 6.6772 44 1 4.8404 -1.9006 7.3538 45 1 4.2710 -0.4732 8.9437 46 1 5.0071 1.8477 9.9690 47 1 5.2557 0.4635 11.0619 48 1 5.3973 2.2120 13.3397 49 1 8.7156 1.6590 9.0096 50 1 7.1812 2.2859 8.3504 51 1 8.1963 -0.5834 8.3590 52 1 7.7587 0.4184 6.9586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160279113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:46 Heat of formation + Delta-G solvation = -35.723318 kcal Electronic energy + Delta-G solvation = -29103.027579 eV Core-core repulsion = 25103.546381 eV Total energy + Delta-G solvation = -3999.481197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.73474 -39.37039 -37.88044 -35.90907 -35.31403 -34.82280 -33.55104 -31.45989 -30.05200 -29.57542 -28.29612 -27.40854 -26.88915 -25.24982 -23.44201 -22.83414 -22.34587 -21.00813 -20.65335 -19.28114 -17.68675 -17.60637 -17.44898 -16.76805 -15.98302 -15.69344 -15.40502 -15.39050 -14.99396 -14.77566 -14.41087 -14.05502 -13.92646 -13.74836 -13.56498 -13.35332 -13.26050 -13.00645 -12.78922 -12.64447 -12.56981 -12.30204 -12.14812 -12.07554 -11.98042 -11.54731 -11.43516 -11.39918 -11.37431 -10.98723 -10.91712 -10.69839 -10.36028 -10.29095 -10.17344 -9.98673 -9.78971 -9.54484 -9.13114 -9.00808 -8.61687 -7.91101 -6.71143 -5.77218 -3.14450 2.24080 2.50489 2.53443 2.88670 3.26883 3.39057 3.46164 3.48741 4.08015 4.46618 4.51813 4.55657 4.59594 4.69389 4.70162 4.89832 5.00425 5.09894 5.13159 5.17971 5.21016 5.26345 5.29432 5.40889 5.44434 5.49385 5.55005 5.57723 5.66175 5.80854 5.86059 5.88955 5.98889 6.03132 6.07201 6.16783 6.22655 6.36468 6.41598 6.57473 6.80670 6.92325 6.95107 7.24218 7.31666 7.36645 7.43030 7.77555 7.85253 7.89348 8.10658 8.40619 9.21911 9.85567 10.44950 11.33373 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.001780 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.545946 B =15726.620658 C =16019.113914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C -0.151 4.151 4 C 0.523 3.477 5 O -0.533 6.533 6 N -0.601 5.601 7 C 0.070 3.930 8 C 0.096 3.904 9 C 0.493 3.507 10 O -0.530 6.530 11 N -0.730 5.730 12 C 0.126 3.874 13 C -0.091 4.091 14 C -0.143 4.143 15 C -0.146 4.146 16 C 0.196 3.804 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.068 0.932 20 C -0.002 4.002 21 N -0.907 5.907 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.142 3.858 27 C -0.090 4.090 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.399 0.601 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.039 0.961 47 H 0.088 0.912 48 H 0.253 0.747 49 H 0.056 0.944 50 H 0.023 0.977 51 H 0.062 0.938 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 -9.807 -28.824 30.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 C -0.208 4.208 4 C 0.311 3.689 5 O -0.409 6.409 6 N -0.334 5.334 7 C -0.073 4.073 8 C -0.031 4.031 9 C 0.278 3.722 10 O -0.405 6.405 11 N -0.382 5.382 12 C 0.003 3.997 13 C -0.129 4.129 14 C -0.143 4.143 15 C -0.165 4.165 16 C 0.071 3.929 17 N -0.318 5.318 18 C -0.375 4.375 19 H 0.086 0.914 20 C -0.200 4.200 21 N -0.552 5.552 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.016 3.984 27 C -0.129 4.129 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.232 0.768 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.056 0.944 47 H 0.106 0.894 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.041 0.959 51 H 0.081 0.919 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.529 -9.000 -28.307 30.214 hybrid contribution 0.479 -0.747 1.023 1.354 sum -5.051 -9.748 -27.284 29.410 Atomic orbital electron populations 1.21645 0.92363 1.02634 1.02509 1.21281 0.98368 0.97514 0.96040 1.21952 1.02067 0.93805 1.02997 1.20785 0.81152 0.78077 0.88878 1.90704 1.55665 1.54374 1.40115 1.47400 1.08953 1.55725 1.21367 1.22088 0.93727 1.01347 0.90118 1.21307 1.02036 0.93436 0.86324 1.21147 0.77483 0.90135 0.83477 1.90714 1.53717 1.15905 1.80199 1.46088 1.65615 1.10569 1.15942 1.21422 0.99793 0.92211 0.86311 1.20906 1.00516 0.97392 0.94061 1.20225 0.96643 1.01017 0.96455 1.23107 0.97457 0.98540 0.97442 1.19698 0.84660 0.93988 0.94530 1.44173 1.04703 1.81611 1.01315 1.19161 0.92741 1.41651 0.83970 0.91408 1.24976 0.97487 0.99353 0.98179 1.70043 1.15146 1.44232 1.25780 0.86276 0.78403 0.78272 0.83835 1.21528 1.21588 1.20502 1.20957 0.96876 0.93201 0.87388 1.20753 0.93447 0.99792 0.98950 0.91523 0.91891 0.92266 0.88826 0.91595 0.91165 0.91307 0.92323 0.89600 0.90894 0.87471 0.87002 0.76753 0.91399 0.91366 0.91481 0.91516 0.89044 0.94365 0.89402 0.93652 0.92547 0.95915 0.91940 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 8.55 37.16 0.32 -0.70 16 2 C -0.11 -0.83 2.44 -91.77 -0.22 -1.06 16 3 C -0.15 -1.06 8.76 37.16 0.33 -0.74 16 4 C 0.52 5.75 6.91 -10.98 -0.08 5.68 16 5 O -0.53 -8.03 15.61 5.56 0.09 -7.94 16 6 N -0.60 -5.40 2.36 -182.96 -0.43 -5.83 16 7 C 0.07 0.39 9.82 59.84 0.59 0.98 16 8 C 0.10 0.80 5.86 -5.19 -0.03 0.77 16 9 C 0.49 5.99 7.90 -10.98 -0.09 5.90 16 10 O -0.53 -8.80 16.43 5.56 0.09 -8.71 16 11 N -0.73 -7.72 5.56 -60.29 -0.33 -8.06 16 12 C 0.13 1.67 5.66 -4.04 -0.02 1.65 16 13 C -0.09 -1.19 5.32 -27.88 -0.15 -1.34 16 14 C -0.14 -2.50 5.11 -100.99 -0.52 -3.01 16 15 C -0.15 -2.89 9.47 -35.78 -0.34 -3.23 16 16 C 0.20 4.82 5.26 -5.03 -0.03 4.79 16 17 N -0.59 -15.29 3.01 -173.57 -0.52 -15.82 16 18 C -0.25 -6.86 9.70 -15.06 -0.15 -7.01 16 19 H 0.07 1.85 7.89 -52.49 -0.41 1.43 16 20 C 0.00 -0.05 4.95 -17.43 -0.09 -0.14 16 21 N -0.91 -26.70 11.22 55.49 0.62 -26.07 16 22 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.14 3.06 6.57 -3.53 -0.02 3.03 16 27 C -0.09 -1.61 5.95 -28.18 -0.17 -1.78 16 28 H 0.07 0.63 7.95 -51.93 -0.41 0.22 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.46 7.72 -51.93 -0.40 0.06 16 32 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.07 0.51 5.54 -51.93 -0.29 0.23 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 0.43 4.25 -51.93 -0.22 0.21 16 37 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 38 H 0.11 0.49 8.07 -51.93 -0.42 0.07 16 39 H 0.11 0.94 7.48 -51.93 -0.39 0.55 16 40 H 0.40 2.88 8.47 -40.82 -0.35 2.53 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 43 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 44 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 45 H 0.09 1.62 7.73 -52.49 -0.41 1.22 16 46 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.09 2.38 6.47 -51.93 -0.34 2.04 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 414.55 15.07 6.25 6.25 Total: -1.00 -36.32 414.55 -9.00 -45.32 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -9.07 Total: 0.15 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.66 Total: 3.80 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.67 Total: -55.78 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.18 Total: -16.65 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.32 -9.00 -45.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160279113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.594 kcal (2) G-P(sol) polarization free energy of solvation -36.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds