Wall clock time and date at job start Tue Mar 31 2020 19:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46995 * 2 1 4 4 C 1.50704 * 109.46854 * 119.99631 * 2 1 3 5 5 O 1.21280 * 120.00361 * 346.58058 * 4 2 1 6 6 N 1.34781 * 119.99675 * 166.57201 * 4 2 1 7 7 C 1.46489 * 120.00137 * 4.21996 * 6 4 2 8 8 C 1.46502 * 119.99643 * 184.21661 * 6 4 2 9 9 C 1.50703 * 109.47086 * 270.00128 * 8 6 4 10 10 O 1.21278 * 119.99917 * 0.02562 * 9 8 6 11 11 N 1.34776 * 119.99949 * 180.02562 * 9 8 6 12 12 C 1.46501 * 119.99908 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47006 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47046 * 179.97438 * 13 12 11 15 15 C 1.29452 * 117.69029 * 95.00214 * 14 13 12 16 16 C 1.50324 * 123.64822 * 181.13826 * 15 14 13 17 17 N 1.47134 * 109.10261 * 348.54202 * 16 15 14 18 18 C 1.36939 * 121.53374 * 223.15656 * 17 16 15 19 19 H 1.07997 * 120.00224 * 156.25041 * 18 17 16 20 20 C 1.38818 * 119.99823 * 336.25328 * 18 17 16 21 21 N 1.31612 * 120.00031 * 342.13860 * 20 18 17 22 22 Si 1.86802 * 119.99687 * 162.14066 * 20 18 17 23 23 H 1.48506 * 109.47051 * 94.98684 * 22 20 18 24 24 H 1.48496 * 109.47222 * 214.98237 * 22 20 18 25 25 H 1.48503 * 109.47338 * 334.98863 * 22 20 18 26 26 C 1.47339 * 117.09075 * 43.37929 * 17 16 15 27 27 C 1.49965 * 117.69160 * 275.02085 * 14 13 12 28 28 H 1.08998 * 109.47617 * 300.00365 * 1 2 3 29 29 H 1.09005 * 109.46913 * 59.99984 * 1 2 3 30 30 H 1.09003 * 109.47091 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47617 * 239.99635 * 2 1 3 32 32 H 1.09005 * 109.47367 * 48.04452 * 3 2 1 33 33 H 1.09003 * 109.47129 * 168.03848 * 3 2 1 34 34 H 1.09000 * 109.47306 * 288.03996 * 3 2 1 35 35 H 1.09000 * 109.47353 * 268.75690 * 7 6 4 36 36 H 1.09001 * 109.47618 * 28.75983 * 7 6 4 37 37 H 1.09001 * 109.47569 * 148.75972 * 7 6 4 38 38 H 1.08998 * 109.47106 * 150.00612 * 8 6 4 39 39 H 1.08998 * 109.47283 * 30.00148 * 8 6 4 40 40 H 0.97004 * 119.99740 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.46831 * 59.99840 * 12 11 9 42 42 H 1.08998 * 109.47038 * 299.99695 * 12 11 9 43 43 H 1.09007 * 109.46968 * 60.00220 * 13 12 11 44 44 H 1.08998 * 109.47320 * 299.99947 * 13 12 11 45 45 H 1.07999 * 118.17652 * 0.86100 * 15 14 13 46 46 H 1.08996 * 109.52535 * 108.64636 * 16 15 14 47 47 H 1.09000 * 109.52695 * 228.83897 * 16 15 14 48 48 H 0.97000 * 119.99858 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.77876 * 178.39911 * 26 17 16 50 50 H 1.09000 * 109.77379 * 57.59075 * 26 17 16 51 51 H 1.08999 * 109.32063 * 281.28571 * 27 14 13 52 52 H 1.08997 * 109.31583 * 40.72029 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 1.2712 -0.9553 2.1425 6 7 3.3273 -1.0736 1.3175 7 6 4.2664 -0.6969 0.2582 8 6 3.7957 -1.8450 2.4716 9 6 4.2488 -0.9016 3.5560 10 8 4.1861 0.2970 3.3821 11 7 4.7236 -1.3900 4.7189 12 6 5.1636 -0.4729 5.7733 13 6 5.6529 -1.2785 6.9784 14 6 6.1060 -0.3352 8.0628 15 6 5.2541 -0.0284 8.9880 16 6 5.5551 0.9172 10.1171 17 7 7.0005 1.1912 10.1433 18 6 7.7035 1.2161 11.3182 19 1 8.7682 1.0350 11.3144 20 6 7.0476 1.4741 12.5142 21 7 5.8557 2.0321 12.5040 22 14 7.8569 1.0291 14.1380 23 1 8.5651 2.2166 14.6799 24 1 6.8187 0.5885 15.1040 25 1 8.8301 -0.0713 13.9209 26 6 7.6592 1.4431 8.8497 27 6 7.5119 0.1823 7.9937 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.5133 2.0141 0.7643 33 1 3.1089 1.4500 0.2130 34 1 1.8610 1.8912 -0.9771 35 1 4.3043 -1.4871 -0.4916 36 1 3.9351 0.2309 -0.2082 37 1 5.2587 -0.5542 0.6861 38 1 4.6293 -2.4794 2.1704 39 1 2.9830 -2.4667 2.8471 40 1 4.7734 -2.3487 4.8580 41 1 4.3296 0.1609 6.0747 42 1 5.9758 0.1495 5.3978 43 1 6.4868 -1.9127 6.6772 44 1 4.8404 -1.9006 7.3538 45 1 4.2710 -0.4732 8.9437 46 1 5.0071 1.8477 9.9690 47 1 5.2557 0.4635 11.0619 48 1 5.3973 2.2120 13.3397 49 1 8.7156 1.6590 9.0096 50 1 7.1812 2.2859 8.3504 51 1 8.1963 -0.5834 8.3590 52 1 7.7587 0.4184 6.9586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160279113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:45 Heat of formation + Delta-G solvation = -60.263108 kcal Electronic energy + Delta-G solvation = -29104.091704 eV Core-core repulsion = 25103.546381 eV Total energy + Delta-G solvation = -4000.545323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.52737 -40.33212 -39.45362 -36.89728 -36.41478 -35.47266 -35.12012 -33.21490 -31.57229 -30.86888 -29.39889 -28.05655 -27.52140 -26.92487 -24.79287 -24.18947 -23.51168 -22.49595 -21.67057 -19.98744 -19.48104 -18.43700 -18.28532 -17.71024 -17.36898 -17.04025 -16.56866 -16.47888 -16.17306 -15.76087 -15.56350 -15.39734 -15.23580 -15.03205 -14.82278 -14.57053 -14.31292 -13.93234 -13.80619 -13.67424 -13.41921 -13.34285 -13.22388 -13.14180 -12.89062 -12.82977 -12.80089 -12.72492 -12.58434 -12.37646 -12.19401 -12.02530 -11.95271 -11.91974 -11.68907 -11.33722 -11.12849 -10.77164 -10.68591 -10.13962 -9.74328 -9.51038 -8.78436 -7.90483 -5.31506 1.35202 1.45056 1.46488 1.50318 1.57170 1.60055 1.89813 2.38582 2.49816 3.26133 3.49227 3.63069 3.77612 3.90985 3.93870 4.04071 4.09092 4.11296 4.17609 4.24462 4.27176 4.33988 4.47712 4.52667 4.56731 4.66064 4.69123 4.73879 4.76676 4.84481 4.88322 4.89079 4.95563 4.98071 5.02210 5.06258 5.14614 5.20541 5.26556 5.33051 5.37300 5.39708 5.42063 5.45878 5.59459 5.85552 6.25037 6.28602 6.30921 6.53023 7.10091 7.10341 7.24130 7.80574 8.36643 9.18600 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.001780 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.545946 B =15726.620658 C =16019.113914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C -0.148 4.148 4 C 0.509 3.491 5 O -0.587 6.587 6 N -0.602 5.602 7 C 0.063 3.937 8 C 0.097 3.903 9 C 0.488 3.512 10 O -0.582 6.582 11 N -0.715 5.715 12 C 0.135 3.865 13 C -0.077 4.077 14 C -0.119 4.119 15 C -0.177 4.177 16 C 0.207 3.793 17 N -0.614 5.614 18 C -0.258 4.258 19 H 0.073 0.927 20 C -0.058 4.058 21 N -0.942 5.942 22 Si 0.971 3.029 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.134 3.866 27 C -0.086 4.086 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.129 0.871 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.112 0.888 40 H 0.419 0.581 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.001 0.999 47 H 0.052 0.948 48 H 0.249 0.751 49 H 0.061 0.939 50 H 0.014 0.986 51 H 0.072 0.928 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 -12.380 -31.867 34.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 C -0.205 4.205 4 C 0.299 3.701 5 O -0.467 6.467 6 N -0.333 5.333 7 C -0.078 4.078 8 C -0.029 4.029 9 C 0.274 3.726 10 O -0.461 6.461 11 N -0.368 5.368 12 C 0.011 3.989 13 C -0.115 4.115 14 C -0.120 4.120 15 C -0.197 4.197 16 C 0.082 3.918 17 N -0.338 5.338 18 C -0.388 4.388 19 H 0.091 0.909 20 C -0.253 4.253 21 N -0.588 5.588 22 Si 0.799 3.201 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.192 1.192 26 C 0.009 3.991 27 C -0.124 4.124 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.172 0.828 39 H 0.130 0.870 40 H 0.256 0.744 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.099 0.901 45 H 0.127 0.873 46 H 0.018 0.982 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.033 0.967 51 H 0.090 0.910 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.644 -11.623 -31.398 33.678 hybrid contribution -0.014 0.107 1.885 1.888 sum -3.658 -11.516 -29.512 31.890 Atomic orbital electron populations 1.21638 0.92801 1.02277 1.02309 1.21367 0.98030 0.97605 0.95781 1.21943 1.01442 0.93369 1.03714 1.21507 0.81589 0.77637 0.89329 1.90671 1.57224 1.56673 1.42119 1.47613 1.08894 1.54893 1.21939 1.22340 0.92802 1.02832 0.89841 1.21493 1.03516 0.92717 0.85205 1.21910 0.76421 0.90023 0.84244 1.90695 1.55879 1.18306 1.81231 1.45896 1.64759 1.11323 1.14869 1.21104 0.98401 0.92355 0.87069 1.20804 1.02122 0.96475 0.92101 1.20616 0.95809 0.99476 0.96068 1.22801 0.99410 1.00058 0.97404 1.19334 0.84051 0.93388 0.95055 1.44468 1.05100 1.81954 1.02284 1.19542 0.93219 1.40905 0.85134 0.90922 1.25821 0.98236 0.99661 1.01587 1.70221 1.16728 1.45685 1.26190 0.85199 0.77414 0.78122 0.79363 1.21232 1.21942 1.19179 1.21170 0.96650 0.95061 0.86260 1.20712 0.93826 0.97880 1.00000 0.94420 0.89305 0.92719 0.85270 0.94295 0.91397 0.88401 0.89055 0.89181 0.90837 0.82758 0.87025 0.74371 0.94482 0.92117 0.88285 0.90102 0.87253 0.98157 0.92924 0.94155 0.92047 0.96746 0.90991 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.55 71.98 0.62 -1.34 16 2 C -0.11 -1.44 2.44 -11.54 -0.03 -1.47 16 3 C -0.15 -1.90 8.76 71.98 0.63 -1.27 16 4 C 0.51 10.90 6.91 87.66 0.61 11.51 16 5 O -0.59 -18.21 15.61 -3.03 -0.05 -18.26 16 6 N -0.60 -9.62 2.36 -851.14 -2.01 -11.63 16 7 C 0.06 0.50 9.82 127.77 1.25 1.76 16 8 C 0.10 1.39 5.86 85.63 0.50 1.89 16 9 C 0.49 11.12 7.90 87.66 0.69 11.81 16 10 O -0.58 -19.31 16.43 -3.02 -0.05 -19.36 16 11 N -0.71 -13.37 5.56 -463.06 -2.57 -15.94 16 12 C 0.13 3.33 5.66 86.38 0.49 3.82 16 13 C -0.08 -1.77 5.32 29.85 0.16 -1.61 16 14 C -0.12 -3.95 5.11 -15.14 -0.08 -4.03 16 15 C -0.18 -7.10 9.47 27.11 0.26 -6.85 16 16 C 0.21 10.71 5.26 85.39 0.45 11.16 16 17 N -0.61 -32.39 3.01 -703.05 -2.11 -34.50 16 18 C -0.26 -14.66 9.70 84.03 0.81 -13.85 16 19 H 0.07 3.96 7.89 -2.91 -0.02 3.94 16 20 C -0.06 -3.37 4.95 84.86 0.42 -2.95 16 21 N -0.94 -57.90 11.22 21.65 0.24 -57.66 16 22 Si 0.97 45.97 29.59 68.60 2.03 48.00 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.13 5.73 6.57 86.26 0.57 6.30 16 27 C -0.09 -2.85 5.95 29.65 0.18 -2.67 16 28 H 0.04 0.76 7.95 -2.39 -0.02 0.74 16 29 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.13 0.82 7.72 -2.39 -0.02 0.80 16 32 H 0.04 0.70 8.09 -2.38 -0.02 0.69 16 33 H 0.07 0.91 5.54 -2.39 -0.01 0.90 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.09 0.65 4.25 -2.39 -0.01 0.64 16 37 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 38 H 0.15 0.71 8.07 -2.39 -0.02 0.69 16 39 H 0.11 1.67 7.48 -2.39 -0.02 1.65 16 40 H 0.42 4.47 8.47 -92.71 -0.79 3.69 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 43 H 0.10 1.74 8.11 -2.38 -0.02 1.72 16 44 H 0.08 1.70 7.78 -2.39 -0.02 1.68 16 45 H 0.11 3.91 7.73 -2.91 -0.02 3.89 16 46 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 47 H 0.05 3.03 6.47 -2.39 -0.02 3.02 16 48 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 49 H 0.06 2.51 7.96 -2.39 -0.02 2.49 16 50 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.09 2.36 8.08 -2.39 -0.02 2.34 16 Total: -1.00 -85.69 414.55 3.12 -82.57 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.12 Total: 14.57 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 7.53 Total: 12.22 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -6.45 Total: -119.74 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.10 Total: -37.62 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -85.69 3.12 -82.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160279113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.309 kcal (2) G-P(sol) polarization free energy of solvation -85.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds