Wall clock time and date at job start Tue Mar 31 2020 20:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47150 * 2 1 4 4 H 1.08996 * 109.47294 * 54.99189 * 3 2 1 5 5 C 1.53004 * 109.46708 * 294.99609 * 3 2 1 6 6 C 1.50693 * 109.47190 * 174.99482 * 3 2 1 7 7 O 1.21290 * 120.00176 * 359.97438 * 6 3 2 8 8 N 1.34772 * 120.00215 * 179.97438 * 6 3 2 9 9 C 1.46498 * 120.00444 * 180.02562 * 8 6 3 10 10 C 1.50702 * 109.47655 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99455 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00443 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00378 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47251 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.46938 * 179.97438 * 14 13 12 16 16 C 1.29453 * 117.69559 * 94.99675 * 15 14 13 17 17 C 1.50322 * 123.65312 * 180.85378 * 16 15 14 18 18 N 1.47007 * 109.16616 * 349.02871 * 17 16 15 19 19 C 1.36936 * 121.37538 * 222.96762 * 18 17 16 20 20 H 1.07999 * 120.00261 * 155.97071 * 19 18 17 21 21 C 1.38815 * 119.99573 * 335.97290 * 19 18 17 22 22 N 1.31614 * 120.00431 * 344.49802 * 21 19 18 23 23 Si 1.86807 * 119.99552 * 164.49603 * 21 19 18 24 24 H 1.48504 * 109.46959 * 94.45785 * 23 21 19 25 25 H 1.48500 * 109.46916 * 214.45070 * 23 21 19 26 26 H 1.48495 * 109.47636 * 334.45400 * 23 21 19 27 27 C 1.47337 * 117.25069 * 42.94177 * 18 17 16 28 28 C 1.49968 * 117.69305 * 274.73349 * 15 14 13 29 29 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47597 * 300.00887 * 1 2 3 31 31 H 1.09002 * 109.46811 * 60.00750 * 1 2 3 32 32 H 1.09002 * 109.47661 * 239.99561 * 2 1 3 33 33 H 1.09002 * 109.46811 * 119.99249 * 2 1 3 34 34 H 1.08999 * 109.46956 * 59.99863 * 5 3 2 35 35 H 1.09000 * 109.46936 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.46816 * 300.00184 * 5 3 2 37 37 H 0.96997 * 119.99805 * 0.02562 * 8 6 3 38 38 H 1.09002 * 109.47126 * 300.00379 * 9 8 6 39 39 H 1.09004 * 109.46961 * 59.99816 * 9 8 6 40 40 H 0.97004 * 119.99802 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.46795 * 299.99829 * 13 12 10 42 42 H 1.08996 * 109.47181 * 59.99301 * 13 12 10 43 43 H 1.09002 * 109.46982 * 299.99592 * 14 13 12 44 44 H 1.08996 * 109.47698 * 59.99496 * 14 13 12 45 45 H 1.07998 * 118.17456 * 0.88417 * 16 15 14 46 46 H 1.09000 * 109.51914 * 108.92579 * 17 16 15 47 47 H 1.08996 * 109.52884 * 229.11363 * 17 16 15 48 48 H 0.97002 * 120.00242 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.77863 * 57.81252 * 27 18 17 50 50 H 1.09002 * 109.78140 * 178.62388 * 27 18 17 51 51 H 1.09002 * 109.31364 * 281.29128 * 28 15 14 52 52 H 1.08996 * 109.31331 * 40.72315 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5419 1.4444 0.1240 7 8 4.1450 0.3952 0.2049 8 7 4.2149 2.6118 0.1449 9 6 5.6750 2.6136 0.2649 10 6 6.1774 4.0344 0.2650 11 8 5.3929 4.9549 0.1734 12 7 7.4982 4.2822 0.3658 13 6 7.9866 5.6634 0.3665 14 6 9.5115 5.6651 0.4904 15 6 10.0138 7.0860 0.4904 16 6 10.2157 7.6527 1.6367 17 6 10.6966 9.0684 1.7929 18 7 11.1362 9.5758 0.4851 19 6 12.2872 10.3059 0.3539 20 1 12.7993 10.3406 -0.5964 21 6 12.7959 11.0013 1.4423 22 7 12.0394 11.2166 2.4976 23 14 14.5541 11.6314 1.4092 24 1 14.5664 13.0400 0.9393 25 1 15.1311 11.5604 2.7757 26 1 15.3626 10.7947 0.4864 27 6 10.2875 9.2659 -0.6788 28 6 10.2503 7.7417 -0.8374 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 0.5490 2.1251 -1.3970 35 1 1.9990 3.1540 -1.3077 36 1 2.0700 1.5873 -2.1492 37 1 3.7326 3.4509 0.0806 38 1 5.9636 2.1265 1.1963 39 1 6.1093 2.0743 -0.5770 40 1 8.1256 3.5459 0.4387 41 1 7.6975 6.1514 -0.5643 42 1 7.5526 6.2018 1.2090 43 1 9.8010 5.1770 1.4210 44 1 9.9452 5.1269 -0.3524 45 1 10.0286 7.0762 2.5305 46 1 9.8841 9.6895 2.1701 47 1 11.5314 9.0944 2.4931 48 1 12.3947 11.7028 3.2580 49 1 9.2803 9.6480 -0.5130 50 1 10.7114 9.7183 -1.5754 51 1 11.1991 7.3948 -1.2469 52 1 9.4455 7.4718 -1.5212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161899211.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:20 Heat of formation + Delta-G solvation = -58.034481 kcal Electronic energy + Delta-G solvation = -28224.109711 eV Core-core repulsion = 24223.661029 eV Total energy + Delta-G solvation = -4000.448682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.64861 -39.66451 -37.95474 -35.93402 -35.64175 -34.77214 -33.65922 -31.51356 -30.56477 -29.90199 -29.15353 -27.65259 -25.70041 -25.10967 -23.12152 -22.56510 -22.04167 -21.10862 -20.74783 -20.22554 -18.14212 -17.62953 -16.92620 -16.55363 -16.33117 -16.01578 -15.74798 -15.48683 -15.15132 -14.81235 -14.56356 -14.17039 -14.01194 -13.96673 -13.65604 -13.56220 -13.37141 -13.20060 -12.82656 -12.61865 -12.56997 -12.24959 -12.11171 -12.05489 -12.03005 -11.61688 -11.45253 -11.26450 -11.11341 -11.06165 -10.92814 -10.73140 -10.41539 -10.32063 -10.20181 -10.12705 -9.82445 -9.57866 -9.56930 -9.30368 -8.66573 -7.95221 -6.73364 -5.79595 -3.18191 2.20598 2.29380 2.43214 2.87195 3.16978 3.37108 3.44171 3.46454 4.20235 4.28368 4.38780 4.46358 4.49139 4.83720 4.88275 4.92684 4.96259 5.04942 5.05512 5.09498 5.14733 5.22564 5.37357 5.38950 5.44155 5.52325 5.52951 5.59875 5.64994 5.74030 5.80494 5.88130 5.94477 5.95216 5.98524 6.10450 6.17129 6.21372 6.36760 6.53603 6.77007 6.89020 7.08728 7.13684 7.21547 7.31099 7.38785 7.74261 7.80616 7.83910 7.86374 8.38415 9.19937 9.82880 10.41386 11.30835 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.040305 B = 0.001466 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.529288 B =19088.917388 C =19178.089921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.110 4.110 4 H 0.099 0.901 5 C -0.148 4.148 6 C 0.519 3.481 7 O -0.542 6.542 8 N -0.718 5.718 9 C 0.099 3.901 10 C 0.506 3.494 11 O -0.538 6.538 12 N -0.723 5.723 13 C 0.124 3.876 14 C -0.092 4.092 15 C -0.144 4.144 16 C -0.145 4.145 17 C 0.196 3.804 18 N -0.595 5.595 19 C -0.246 4.246 20 H 0.068 0.932 21 C -0.001 4.001 22 N -0.909 5.909 23 Si 0.904 3.096 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.143 3.857 28 C -0.091 4.091 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.413 0.587 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.403 0.597 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.091 0.909 48 H 0.253 0.747 49 H 0.024 0.976 50 H 0.056 0.944 51 H 0.063 0.937 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.963 -21.432 -4.947 29.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.131 4.131 4 H 0.117 0.883 5 C -0.205 4.205 6 C 0.306 3.694 7 O -0.419 6.419 8 N -0.374 5.374 9 C -0.029 4.029 10 C 0.291 3.709 11 O -0.415 6.415 12 N -0.374 5.374 13 C 0.001 3.999 14 C -0.130 4.130 15 C -0.145 4.145 16 C -0.164 4.164 17 C 0.071 3.929 18 N -0.319 5.319 19 C -0.375 4.375 20 H 0.086 0.914 21 C -0.199 4.199 22 N -0.555 5.555 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.016 3.984 28 C -0.130 4.130 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.237 0.763 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.109 0.891 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.008 -21.386 -4.808 29.013 hybrid contribution 1.124 0.406 0.207 1.212 sum -17.884 -20.980 -4.601 27.950 Atomic orbital electron populations 1.21848 0.95347 1.01992 1.01982 1.21351 0.95471 0.93958 1.03539 1.21354 0.91144 0.99677 1.00922 0.88262 1.21857 1.02593 1.00447 0.95638 1.20755 0.90234 0.83033 0.75385 1.90708 1.70355 1.31405 1.49404 1.45765 1.06327 1.10092 1.75225 1.21066 0.82644 0.94427 1.04751 1.20485 0.82950 0.90934 0.76528 1.90723 1.55190 1.46029 1.49520 1.46016 1.06996 1.10147 1.74270 1.21504 0.94375 0.81055 1.02962 1.20912 0.93047 0.96788 1.02218 1.20220 1.04308 0.94047 0.95908 1.23132 0.97654 0.99643 0.96020 1.19707 0.98605 0.85913 0.88659 1.44129 1.24447 1.61015 1.02273 1.19186 0.98667 1.22193 0.97490 0.91412 1.24984 0.98701 0.98293 0.97933 1.70016 1.34489 1.43776 1.07188 0.86254 0.84776 0.78673 0.76939 1.21492 1.21583 1.20501 1.20992 0.94162 0.91607 0.91626 1.20794 1.00011 0.98571 0.93630 0.92401 0.92628 0.92359 0.91265 0.91093 0.90944 0.91888 0.91985 0.74910 0.88318 0.88323 0.76298 0.91035 0.91050 0.91443 0.91363 0.89072 0.94409 0.89135 0.93644 0.95811 0.92550 0.91895 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.67 37.16 0.36 -0.37 16 2 C -0.11 -0.69 4.75 -26.73 -0.13 -0.81 16 3 C -0.11 -0.70 2.72 -91.77 -0.25 -0.95 16 4 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 5 C -0.15 -0.77 8.84 37.16 0.33 -0.44 16 6 C 0.52 4.76 7.15 -10.99 -0.08 4.68 16 7 O -0.54 -6.73 15.92 5.55 0.09 -6.64 16 8 N -0.72 -6.08 5.42 -61.47 -0.33 -6.41 16 9 C 0.10 0.79 6.15 -5.19 -0.03 0.76 16 10 C 0.51 5.12 7.90 -10.99 -0.09 5.04 16 11 O -0.54 -7.38 15.67 5.55 0.09 -7.29 16 12 N -0.72 -6.52 5.56 -60.30 -0.33 -6.85 16 13 C 0.12 1.45 5.66 -4.05 -0.02 1.43 16 14 C -0.09 -1.11 5.32 -27.89 -0.15 -1.25 16 15 C -0.14 -2.39 5.11 -100.99 -0.52 -2.91 16 16 C -0.14 -2.73 9.47 -35.78 -0.34 -3.07 16 17 C 0.20 4.67 5.23 -5.10 -0.03 4.64 16 18 N -0.60 -14.95 3.01 -173.56 -0.52 -15.47 16 19 C -0.25 -6.75 9.71 -15.06 -0.15 -6.89 16 20 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 21 C 0.00 -0.04 5.01 -17.43 -0.09 -0.12 16 22 N -0.91 -26.24 11.08 55.49 0.61 -25.62 16 23 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.14 2.98 6.59 -3.43 -0.02 2.95 16 28 C -0.09 -1.56 5.95 -28.08 -0.17 -1.73 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.54 7.95 -51.93 -0.41 0.13 16 34 H 0.07 0.29 6.56 -51.93 -0.34 -0.05 16 35 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.41 3.36 6.85 -40.82 -0.28 3.08 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 2.46 8.47 -40.82 -0.35 2.11 16 41 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 44 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 45 H 0.09 1.52 7.73 -52.49 -0.41 1.11 16 46 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 52 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 416.71 15.07 6.28 6.28 Total: -1.00 -33.24 416.71 -9.64 -42.89 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -9.13 Total: 1.58 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.36 Total: 0.95 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.58 Total: -54.35 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.18 Total: -13.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.24 -9.64 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161899211.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.149 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds