Wall clock time and date at job start Tue Mar 31 2020 20:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47303 * 2 1 4 4 H 1.09008 * 109.29357 * 305.41932 * 3 2 1 5 5 C 1.52906 * 109.31448 * 186.05164 * 3 2 1 6 6 C 1.53340 * 108.68669 * 188.95338 * 5 3 2 7 7 H 1.09003 * 109.70182 * 187.26840 * 6 5 3 8 8 C 1.50698 * 109.67375 * 307.78092 * 6 5 3 9 9 O 1.21286 * 119.99993 * 95.27282 * 8 6 5 10 10 N 1.34782 * 120.00065 * 275.27276 * 8 6 5 11 11 C 1.46499 * 119.99793 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.46635 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46997 * 174.73222 * 12 11 10 14 14 C 1.53003 * 115.54779 * 65.16923 * 13 12 11 15 15 N 1.46498 * 109.46882 * 65.37135 * 14 13 12 16 16 C 1.36941 * 119.99936 * 183.06872 * 15 14 13 17 17 H 1.08004 * 119.99790 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00347 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99960 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00265 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47163 * 89.99995 * 20 18 16 22 22 H 1.48503 * 109.46942 * 209.99822 * 20 18 16 23 23 H 1.48499 * 109.46940 * 329.99985 * 20 18 16 24 24 C 1.53000 * 117.50082 * 210.84216 * 13 12 11 25 25 C 1.52997 * 117.49888 * 279.50376 * 13 12 11 26 26 C 1.53066 * 108.42887 * 67.51509 * 6 5 3 27 27 C 1.50178 * 109.89320 * 311.10124 * 26 6 5 28 28 O 1.21278 * 118.24717 * 197.59910 * 27 26 6 29 29 N 1.33355 * 123.50660 * 17.57701 * 27 26 6 30 30 H 1.08994 * 109.46975 * 299.99824 * 1 2 3 31 31 H 1.08998 * 109.46938 * 60.00386 * 1 2 3 32 32 H 1.08997 * 109.46580 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47602 * 239.99796 * 2 1 3 34 34 H 1.09002 * 109.47417 * 119.99704 * 2 1 3 35 35 H 1.08998 * 109.60469 * 69.18432 * 5 3 2 36 36 H 1.09001 * 109.58375 * 308.70531 * 5 3 2 37 37 H 0.96994 * 119.99846 * 359.97438 * 10 8 6 38 38 H 1.09001 * 109.47418 * 60.00082 * 11 10 8 39 39 H 1.08996 * 109.47087 * 299.99407 * 11 10 8 40 40 H 1.08993 * 109.47010 * 54.73676 * 12 11 10 41 41 H 1.09002 * 109.47145 * 294.73072 * 12 11 10 42 42 H 1.09006 * 109.46884 * 185.37135 * 14 13 12 43 43 H 1.09003 * 109.47195 * 305.37128 * 14 13 12 44 44 H 0.96992 * 120.00457 * 3.07073 * 15 14 13 45 45 H 0.96998 * 120.00090 * 180.02562 * 19 18 16 46 46 H 1.09003 * 117.49535 * 215.00281 * 24 13 12 47 47 H 1.08990 * 117.49947 * 0.02562 * 24 13 12 48 48 H 1.08997 * 117.50264 * 359.97438 * 25 13 12 49 49 H 1.09000 * 117.49899 * 144.99299 * 25 13 12 50 50 H 1.09007 * 109.39604 * 71.22550 * 26 6 5 51 51 H 1.08993 * 109.40269 * 190.96581 * 26 6 5 52 52 H 0.97001 * 117.94672 * 177.77742 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9808 -0.8384 5 6 3.5615 1.4409 -0.1521 6 6 4.0793 2.8665 0.0738 7 1 5.1437 2.9116 -0.1565 8 6 3.3274 3.8258 -0.8124 9 8 2.3652 4.4241 -0.3796 10 7 3.7242 4.0189 -2.0859 11 6 2.9935 4.9520 -2.9472 12 6 3.6453 4.9855 -4.3311 13 6 2.8073 5.8573 -5.2685 14 6 2.7387 7.3416 -4.9037 15 7 4.0701 7.9387 -5.0347 16 6 4.2679 9.2513 -4.6984 17 1 3.4423 9.8465 -4.3370 18 6 5.5295 9.8170 -4.8220 19 7 6.5358 9.0915 -5.2619 20 14 5.7992 11.6078 -4.3640 21 1 6.1702 11.7012 -2.9291 22 1 6.8924 12.1721 -5.1957 23 1 4.5495 12.3734 -4.6030 24 6 2.8020 5.4941 -6.7547 25 6 1.5632 5.2260 -5.8965 26 6 3.8536 3.2363 1.5419 27 6 2.4420 2.9124 1.9392 28 8 1.9961 3.4260 2.9433 29 7 1.6524 2.0906 1.2467 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8284 1.1096 -1.1557 36 1 4.0018 0.7706 0.5861 37 1 4.4939 3.5408 -2.4319 38 1 3.0215 5.9494 -2.5085 39 1 1.9579 4.6251 -3.0408 40 1 3.7020 3.9730 -4.7305 41 1 4.6497 5.4009 -4.2496 42 1 2.0453 7.8490 -5.5746 43 1 2.3925 7.4475 -3.8755 44 1 4.8114 7.4043 -5.3596 45 1 7.4174 9.4866 -5.3480 46 1 2.7497 6.3126 -7.4726 47 1 3.3951 4.6338 -7.0646 48 1 1.3418 4.1895 -5.6422 49 1 0.6958 5.8681 -6.0498 50 1 4.5445 2.6715 2.1679 51 1 4.0325 4.3027 1.6783 52 1 0.7646 1.9126 1.5947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166341454.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:42 Heat of formation + Delta-G solvation = -85.015353 kcal Electronic energy + Delta-G solvation = -30075.314385 eV Core-core repulsion = 26073.695725 eV Total energy + Delta-G solvation = -4001.618660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.04102 -40.25224 -39.46411 -37.95686 -36.08546 -35.73623 -34.87589 -33.01442 -32.79117 -31.13947 -29.99296 -27.81877 -26.52029 -24.82549 -24.64087 -23.77057 -22.98823 -22.51074 -21.88443 -20.47304 -19.68890 -18.96517 -18.34405 -17.63425 -17.36594 -16.90667 -16.78225 -16.62584 -16.22595 -16.11648 -15.70489 -15.37281 -15.15553 -14.98393 -14.79015 -14.69262 -14.38718 -14.31099 -14.05599 -13.84436 -13.54202 -13.15141 -13.04973 -12.96034 -12.87722 -12.80960 -12.48377 -12.33419 -12.27962 -12.19051 -12.13626 -11.94579 -11.85412 -11.83284 -11.73023 -11.11500 -10.92749 -10.84324 -10.73416 -10.53163 -10.06196 -10.02928 -8.98216 -7.96611 -5.23595 1.44525 1.45847 1.53895 1.61340 1.71347 2.16661 2.39926 2.52743 2.91803 3.36202 3.49877 3.55407 3.57638 3.76130 3.83303 3.84328 3.96861 4.02209 4.10206 4.20045 4.20391 4.26955 4.44820 4.46052 4.51194 4.53582 4.59089 4.64735 4.74919 4.77501 4.84903 4.86791 4.92998 4.94914 4.98363 5.09346 5.09834 5.12806 5.20498 5.26500 5.28856 5.35084 5.38031 5.40203 5.46753 5.49364 5.84757 6.26495 6.42137 6.59854 7.24980 7.30166 7.33744 8.09658 8.36180 9.26500 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.002651 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.307453 B =10560.136848 C =11927.532075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.125 4.125 3 C 0.130 3.870 4 H 0.056 0.944 5 C -0.114 4.114 6 C -0.105 4.105 7 H 0.147 0.853 8 C 0.505 3.495 9 O -0.582 6.582 10 N -0.711 5.711 11 C 0.135 3.865 12 C -0.072 4.072 13 C -0.142 4.142 14 C 0.187 3.813 15 N -0.733 5.733 16 C -0.247 4.247 17 H 0.066 0.934 18 C -0.069 4.069 19 N -0.963 5.963 20 Si 0.967 3.033 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.274 1.274 24 C -0.162 4.162 25 C -0.150 4.150 26 C -0.119 4.119 27 C 0.526 3.474 28 O -0.622 6.622 29 N -0.702 5.702 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.417 0.583 38 H 0.028 0.972 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.009 0.991 43 H 0.012 0.988 44 H 0.378 0.622 45 H 0.252 0.748 46 H 0.076 0.924 47 H 0.112 0.888 48 H 0.119 0.881 49 H 0.090 0.910 50 H 0.142 0.858 51 H 0.080 0.920 52 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -27.482 5.344 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.163 4.163 3 C 0.026 3.974 4 H 0.074 0.926 5 C -0.152 4.152 6 C -0.126 4.126 7 H 0.164 0.836 8 C 0.292 3.708 9 O -0.462 6.462 10 N -0.363 5.363 11 C 0.011 3.989 12 C -0.109 4.109 13 C -0.143 4.143 14 C 0.061 3.939 15 N -0.376 5.376 16 C -0.379 4.379 17 H 0.084 0.916 18 C -0.262 4.262 19 N -0.614 5.614 20 Si 0.796 3.204 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.199 1.199 24 C -0.200 4.200 25 C -0.187 4.187 26 C -0.159 4.159 27 C 0.315 3.685 28 O -0.506 6.506 29 N -0.352 5.352 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.255 0.745 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.030 0.970 44 H 0.210 0.790 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.131 0.869 48 H 0.138 0.862 49 H 0.109 0.891 50 H 0.159 0.841 51 H 0.099 0.901 52 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.193 -26.581 6.072 27.960 hybrid contribution 0.193 1.579 0.101 1.594 sum -6.000 -25.002 6.174 26.442 Atomic orbital electron populations 1.21831 0.96081 1.02569 1.01287 1.21877 0.96026 0.93685 1.04672 1.21254 0.96791 0.94278 0.85089 0.92596 1.22040 0.92678 0.93442 1.07026 1.21566 1.03499 0.95281 0.92287 0.83562 1.21229 0.84347 0.82672 0.82571 1.90765 1.30099 1.50647 1.74667 1.45901 1.33799 1.44881 1.11730 1.21051 0.95884 0.91969 0.89993 1.21068 0.97997 0.99807 0.92072 1.21431 1.02863 0.94125 0.95889 1.20234 0.86894 0.90326 0.96489 1.42387 1.06820 1.09398 1.78986 1.19568 0.94304 0.88903 1.35112 0.91593 1.25442 0.95745 1.01980 1.02993 1.69786 1.00505 1.36968 1.54117 0.85241 0.77316 0.80553 0.77273 1.21636 1.21679 1.19921 1.22986 1.01814 1.03076 0.92083 1.23084 0.91205 1.02195 1.02234 1.21558 0.93107 1.04265 0.96920 1.20433 0.89416 0.76745 0.81870 1.90700 1.76246 1.53778 1.29887 1.45541 1.17853 1.46677 1.25106 0.93855 0.92975 0.91016 0.87937 0.90305 0.85898 0.86842 0.74549 0.95317 0.91669 0.88097 0.92445 0.97267 0.97015 0.78981 0.93914 0.90527 0.86926 0.86243 0.89105 0.84055 0.90102 0.77131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.76 71.98 0.70 -0.83 16 2 C -0.12 -0.89 5.57 30.59 0.17 -0.72 16 3 C 0.13 1.63 2.37 45.10 0.11 1.74 16 4 H 0.06 0.95 7.24 -2.38 -0.02 0.93 16 5 C -0.11 -0.77 4.93 30.68 0.15 -0.62 16 6 C -0.11 -1.36 3.07 -11.40 -0.03 -1.40 16 7 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 8 C 0.50 11.53 5.64 87.66 0.49 12.03 16 9 O -0.58 -19.90 14.58 -3.05 -0.04 -19.95 16 10 N -0.71 -14.20 5.56 -463.05 -2.57 -16.77 16 11 C 0.14 3.64 5.40 86.38 0.47 4.11 16 12 C -0.07 -1.82 5.13 30.60 0.16 -1.66 16 13 C -0.14 -4.24 1.53 -52.18 -0.08 -4.32 16 14 C 0.19 7.70 5.94 86.38 0.51 8.21 16 15 N -0.73 -37.38 5.47 -343.44 -1.88 -39.26 16 16 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 17 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 18 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 19 N -0.96 -58.39 13.06 21.65 0.28 -58.10 16 20 Si 0.97 47.05 29.55 68.60 2.03 49.07 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 23 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 24 C -0.16 -4.25 9.94 30.62 0.30 -3.95 16 25 C -0.15 -3.42 9.94 30.62 0.30 -3.11 16 26 C -0.12 -2.25 5.21 29.71 0.15 -2.09 16 27 C 0.53 14.00 6.38 87.71 0.56 14.56 16 28 O -0.62 -23.11 17.78 -3.02 -0.05 -23.17 16 29 N -0.70 -14.20 4.91 -446.65 -2.20 -16.40 16 30 H 0.04 0.51 6.67 -2.39 -0.02 0.49 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.11 0.30 8.11 -2.39 -0.02 0.28 16 37 H 0.42 5.18 8.47 -92.71 -0.79 4.39 16 38 H 0.03 1.05 7.23 -2.39 -0.02 1.03 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.10 1.77 8.09 -2.39 -0.02 1.75 16 41 H 0.06 1.78 7.71 -2.39 -0.02 1.76 16 42 H 0.01 0.40 8.09 -2.38 -0.02 0.38 16 43 H 0.01 0.52 7.10 -2.39 -0.02 0.50 16 44 H 0.38 20.02 7.28 -92.71 -0.68 19.34 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 46 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.14 1.63 8.14 -2.38 -0.02 1.61 16 51 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 52 H 0.39 8.13 7.04 -92.71 -0.65 7.48 16 Total: -1.00 -84.82 413.53 -0.34 -85.16 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -1.18 Total: 34.31 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.28 Total: 5.11 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -6.36 Total: -130.54 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.10 Total: -43.11 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -84.82 -0.34 -85.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166341454.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.143 kcal (2) G-P(sol) polarization free energy of solvation -84.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds