Wall clock time and date at job start Tue Mar 31 2020 20:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46710 * 2 1 4 4 H 1.09000 * 109.29797 * 54.59346 * 3 2 1 5 5 C 1.52897 * 109.14622 * 174.02127 * 3 2 1 6 6 C 1.53339 * 108.69472 * 170.90379 * 5 3 2 7 7 H 1.09001 * 109.67246 * 52.28828 * 6 5 3 8 8 C 1.50698 * 109.67693 * 172.78290 * 6 5 3 9 9 O 1.21281 * 120.00073 * 359.50479 * 8 6 5 10 10 N 1.34774 * 120.00093 * 179.50474 * 8 6 5 11 11 C 1.46507 * 120.00195 * 185.05851 * 10 8 6 12 12 C 1.52998 * 109.47376 * 184.92431 * 11 10 8 13 13 C 1.53000 * 109.47314 * 185.19354 * 12 11 10 14 14 C 1.52996 * 115.54507 * 294.51608 * 13 12 11 15 15 N 1.46499 * 109.47184 * 279.58591 * 14 13 12 16 16 C 1.36941 * 119.99788 * 175.03412 * 15 14 13 17 17 H 1.07995 * 120.00124 * 5.15654 * 16 15 14 18 18 C 1.38812 * 119.99800 * 185.15867 * 16 15 14 19 19 N 1.31620 * 119.99888 * 354.81634 * 18 16 15 20 20 Si 1.86802 * 120.00058 * 174.81644 * 18 16 15 21 21 H 1.48504 * 109.47124 * 89.99891 * 20 18 16 22 22 H 1.48500 * 109.47024 * 209.99980 * 20 18 16 23 23 H 1.48497 * 109.46909 * 329.99647 * 20 18 16 24 24 C 1.52997 * 117.51825 * 80.21568 * 13 12 11 25 25 C 1.52992 * 117.50128 * 148.84871 * 13 12 11 26 26 C 1.53065 * 108.45740 * 292.53614 * 6 5 3 27 27 C 1.50175 * 109.89101 * 48.87956 * 26 6 5 28 28 O 1.21283 * 118.24966 * 162.39710 * 27 26 6 29 29 N 1.33356 * 123.50814 * 342.41801 * 27 26 6 30 30 H 1.08989 * 109.47572 * 59.99383 * 1 2 3 31 31 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46415 * 299.99331 * 1 2 3 33 33 H 1.09000 * 109.46902 * 240.00710 * 2 1 3 34 34 H 1.08994 * 109.47898 * 120.00280 * 2 1 3 35 35 H 1.09002 * 109.55734 * 51.16613 * 5 3 2 36 36 H 1.09002 * 109.63620 * 290.69159 * 5 3 2 37 37 H 0.97002 * 120.00358 * 5.05741 * 10 8 6 38 38 H 1.08996 * 109.46670 * 64.92349 * 11 10 8 39 39 H 1.09001 * 109.46538 * 304.92480 * 11 10 8 40 40 H 1.09003 * 109.47323 * 65.18794 * 12 11 10 41 41 H 1.09010 * 109.46836 * 305.19313 * 12 11 10 42 42 H 1.09007 * 109.47140 * 159.58544 * 14 13 12 43 43 H 1.08999 * 109.47404 * 39.59086 * 14 13 12 44 44 H 0.96998 * 120.00099 * 355.03273 * 15 14 13 45 45 H 0.96993 * 120.00178 * 5.14331 * 19 18 16 46 46 H 1.09003 * 117.49975 * 214.97158 * 24 13 12 47 47 H 1.08999 * 117.50282 * 359.97438 * 24 13 12 48 48 H 1.09010 * 117.49979 * 359.97224 * 25 13 12 49 49 H 1.08995 * 117.50135 * 144.99732 * 25 13 12 50 50 H 1.09001 * 109.40533 * 169.00670 * 26 6 5 51 51 H 1.08999 * 109.40577 * 288.75025 * 26 6 5 52 52 H 0.97001 * 117.94857 * 182.21880 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5980 1.9808 0.8385 5 6 3.5614 1.4366 0.1504 6 6 4.0835 2.8601 -0.0786 7 1 3.5434 3.5566 0.5627 8 6 5.5560 2.9174 0.2371 9 8 6.1337 1.9214 0.6181 10 7 6.2308 4.0755 0.0962 11 6 7.6819 4.1068 0.2956 12 6 8.1791 5.5504 0.1987 13 6 9.7069 5.5701 0.2775 14 6 10.3047 5.1145 1.6100 15 7 10.2439 6.2155 2.5745 16 6 10.6299 6.0110 3.8724 17 1 11.0570 5.0635 4.1658 18 6 10.4721 7.0216 4.8108 19 7 10.0474 8.2090 4.4341 20 14 10.8625 6.6962 6.6084 21 1 12.2889 7.0152 6.8708 22 1 9.9990 7.5486 7.4646 23 1 10.6098 5.2662 6.9188 24 6 10.4848 5.2360 -0.9969 25 6 10.4394 6.6767 -0.4838 26 6 3.8565 3.2292 -1.5466 27 6 2.4433 2.9093 -1.9412 28 8 1.9973 3.4234 -2.9451 29 7 1.6524 2.0906 -1.2467 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 3.9984 0.7637 -0.5874 36 1 3.8290 1.1060 1.1541 37 1 5.7558 4.8884 -0.1373 38 1 8.1670 3.5031 -0.4714 39 1 7.9220 3.7051 1.2800 40 1 7.7652 6.1333 1.0216 41 1 7.8586 5.9822 -0.7496 42 1 11.3434 4.8195 1.4604 43 1 9.7374 4.2655 1.9915 44 1 9.9303 7.0894 2.2937 45 1 9.7737 8.3573 3.5155 46 1 11.4226 4.6916 -0.8860 47 1 9.9083 5.0016 -1.8917 48 1 9.8329 7.3906 -1.0413 49 1 11.3473 7.0801 -0.0354 50 1 4.0385 4.2950 -1.6843 51 1 4.5447 2.6618 -2.1733 52 1 0.7634 1.9151 -1.5930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166341463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:46 Heat of formation + Delta-G solvation = -62.034880 kcal Electronic energy + Delta-G solvation = -29260.275441 eV Core-core repulsion = 25259.653289 eV Total energy + Delta-G solvation = -4000.622152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15656 -39.64609 -38.39250 -37.43052 -35.02379 -34.38565 -34.18634 -32.51655 -30.68815 -30.21705 -29.37423 -26.17937 -25.53186 -24.16795 -22.98291 -22.74627 -22.23551 -21.81292 -20.57204 -19.71954 -18.62583 -17.82509 -17.27126 -17.12244 -16.74870 -16.13196 -15.83117 -15.59289 -15.22529 -14.92517 -14.65259 -14.40244 -14.25371 -13.99425 -13.95951 -13.75335 -13.55863 -13.31987 -13.17569 -12.99694 -12.46869 -12.24508 -12.06632 -11.93611 -11.80983 -11.57538 -11.48149 -11.41662 -11.31511 -11.26187 -10.85082 -10.71493 -10.62839 -10.49979 -10.06278 -9.92791 -9.78130 -9.52799 -9.51775 -9.17088 -9.11778 -8.79371 -6.98169 -6.07549 -3.08357 2.23567 2.42713 2.82793 2.94496 3.52256 3.57243 3.71025 3.95706 3.96898 4.08913 4.14458 4.25917 4.51742 4.55106 4.61437 4.69143 4.80146 4.87273 4.92502 4.99787 5.01483 5.06959 5.08798 5.20253 5.25158 5.25525 5.42195 5.44989 5.46108 5.57995 5.60308 5.61500 5.66112 5.67141 5.76853 5.82667 6.01857 6.03570 6.14454 6.29340 6.34660 6.34912 6.35251 6.41347 6.68719 6.76270 6.90555 7.33328 7.79827 7.83964 8.04642 8.78420 9.25650 10.11979 10.28442 11.39593 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.002209 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.628736 B =12671.547225 C =13965.991852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.136 4.136 3 C 0.138 3.862 4 H 0.080 0.920 5 C -0.112 4.112 6 C -0.113 4.113 7 H 0.107 0.893 8 C 0.518 3.482 9 O -0.533 6.533 10 N -0.726 5.726 11 C 0.121 3.879 12 C -0.088 4.088 13 C -0.124 4.124 14 C 0.192 3.808 15 N -0.739 5.739 16 C -0.329 4.329 17 H 0.063 0.937 18 C -0.046 4.046 19 N -0.945 5.945 20 Si 1.081 2.919 21 H -0.296 1.296 22 H -0.288 1.288 23 H -0.295 1.295 24 C -0.175 4.175 25 C -0.165 4.165 26 C -0.126 4.126 27 C 0.525 3.475 28 O -0.556 6.556 29 N -0.714 5.714 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.400 0.600 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.017 0.983 43 H 0.029 0.971 44 H 0.367 0.633 45 H 0.255 0.745 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.107 0.893 51 H 0.106 0.894 52 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.498 -13.788 -13.241 25.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.033 3.967 4 H 0.098 0.902 5 C -0.150 4.150 6 C -0.134 4.134 7 H 0.125 0.875 8 C 0.303 3.697 9 O -0.410 6.410 10 N -0.377 5.377 11 C -0.001 4.001 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.064 3.936 15 N -0.384 5.384 16 C -0.460 4.460 17 H 0.081 0.919 18 C -0.243 4.243 19 N -0.591 5.591 20 Si 0.912 3.088 21 H -0.223 1.223 22 H -0.214 1.214 23 H -0.222 1.222 24 C -0.212 4.212 25 C -0.202 4.202 26 C -0.166 4.166 27 C 0.312 3.688 28 O -0.435 6.435 29 N -0.368 5.368 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.234 0.766 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.047 0.953 44 H 0.201 0.799 45 H 0.066 0.934 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.116 0.884 50 H 0.125 0.875 51 H 0.124 0.876 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -16.871 -13.739 -11.811 24.756 hybrid contribution -0.652 -0.128 -1.752 1.874 sum -17.523 -13.867 -13.562 26.140 Atomic orbital electron populations 1.21814 0.95308 1.02356 1.01917 1.21925 0.96494 0.95291 1.03739 1.21109 0.95470 0.93835 0.86291 0.90189 1.21788 0.92765 0.95183 1.05302 1.21467 0.94285 1.00215 0.97463 0.87537 1.20301 0.88536 0.83362 0.77508 1.90735 1.70003 1.34886 1.45350 1.46061 1.09375 1.10899 1.71385 1.21418 0.78392 0.97585 1.02744 1.21219 0.93654 0.95451 1.02222 1.21607 0.92625 1.04321 0.93934 1.20154 0.96282 0.91467 0.85678 1.42319 1.80132 1.08566 1.07389 1.20071 1.37906 1.01739 0.86303 0.91850 1.25747 1.00885 0.93278 1.04429 1.70844 1.47450 1.21276 1.19511 0.83219 0.76103 0.74489 0.74968 1.22345 1.21397 1.22185 1.23007 1.02102 0.99166 0.96950 1.22922 1.02944 0.91287 1.03022 1.21646 0.94312 1.04946 0.95702 1.19981 0.87906 0.77997 0.82941 1.90788 1.74579 1.51708 1.26382 1.45705 1.18312 1.47507 1.25246 0.92825 0.92073 0.92205 0.90993 0.89889 0.90025 0.88396 0.76647 0.91630 0.90357 0.90251 0.91862 0.96542 0.95294 0.79935 0.93405 0.88898 0.89252 0.89273 0.88434 0.87456 0.87570 0.76434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 9.76 37.16 0.36 -0.22 16 2 C -0.14 -0.58 5.56 -26.73 -0.15 -0.73 16 3 C 0.14 0.72 3.07 -68.39 -0.21 0.51 16 4 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 5 C -0.11 -0.77 3.98 -26.61 -0.11 -0.88 16 6 C -0.11 -0.84 2.60 -91.56 -0.24 -1.08 16 7 H 0.11 0.66 8.13 -51.93 -0.42 0.23 16 8 C 0.52 5.74 7.13 -10.99 -0.08 5.66 16 9 O -0.53 -8.07 15.88 5.56 0.09 -7.98 16 10 N -0.73 -7.57 5.44 -60.29 -0.33 -7.90 16 11 C 0.12 1.58 5.46 -4.04 -0.02 1.56 16 12 C -0.09 -1.16 5.22 -26.73 -0.14 -1.30 16 13 C -0.12 -1.92 1.53 -154.52 -0.24 -2.15 16 14 C 0.19 3.88 6.12 -4.04 -0.02 3.85 16 15 N -0.74 -18.46 5.56 -59.91 -0.33 -18.79 16 16 C -0.33 -9.35 9.98 -15.06 -0.15 -9.50 16 17 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 19 N -0.94 -29.17 13.69 55.49 0.76 -28.41 16 20 Si 1.08 26.17 29.92 -169.99 -5.09 21.09 16 21 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.17 -2.28 9.90 -26.73 -0.26 -2.55 16 25 C -0.16 -2.41 9.82 -26.74 -0.26 -2.67 16 26 C -0.13 -0.93 5.25 -28.10 -0.15 -1.08 16 27 C 0.52 4.85 7.71 -11.87 -0.09 4.75 16 28 O -0.56 -7.45 17.78 5.55 0.10 -7.35 16 29 N -0.71 -4.80 5.12 -54.87 -0.28 -5.08 16 30 H 0.05 0.19 6.67 -51.94 -0.35 -0.15 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.10 0.73 7.89 -51.93 -0.41 0.32 16 37 H 0.40 3.13 8.42 -40.82 -0.34 2.79 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.26 6.93 -51.93 -0.36 0.90 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 0.69 8.09 -51.92 -0.42 0.27 16 42 H 0.02 0.35 7.94 -51.92 -0.41 -0.06 16 43 H 0.03 0.61 6.73 -51.93 -0.35 0.26 16 44 H 0.37 9.36 6.45 -40.82 -0.26 9.10 16 45 H 0.25 7.72 6.79 -40.82 -0.28 7.44 16 46 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.09 1.16 8.14 -51.92 -0.42 0.73 16 49 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 50 H 0.11 0.69 8.09 -51.93 -0.42 0.27 16 51 H 0.11 0.80 8.09 -51.93 -0.42 0.38 16 52 H 0.40 2.46 7.04 -40.82 -0.29 2.17 16 LS Contribution 416.04 15.07 6.27 6.27 Total: -1.00 -35.97 416.04 -9.67 -45.65 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -9.01 Total: 9.78 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.85 Total: -7.26 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.18 Total: -60.19 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.19 Total: -15.33 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.97 -9.67 -45.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166341463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.387 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds